SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11162

Length: 1110 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11162

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AP2 domain class transcription factor n=1 Tax=Malus x domestica RepID=D5L0Z0_MALDO	-	-	4.0e-27	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	AP2/ERF domain-containing transcription factor	-	-	1.998e-27	-

Source	Gene names
Sma3	AP22.2; At1g19210; At1g74930; At2g23340; At3g50260; At4g36900; At5g21960; At5g67190; B1172G12.8; C-EF8; C7A10.460; DBP; DREB; DREB32; DREB33; DREB34; DREB37; DREB38; DREB44; DREB45; DREB47; DREB53; DREB58; DREB59; DREB60; DREB61; DREB72; ERF008; ERF009; E

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AP2/ERF domain	IPR001471	-	0.0	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G19210.1	Integrase-type DNA-binding superfamily protein chr1:6626973-6627530 REVERSE LENGTH=185	2.0e-31	63%
RefSeq	Arabidopsis thaliana	NP_173355.3	ethylene-responsive transcription factor ERF017 [Arabidopsis thaliana]	3.0e-31	63%
RefSeq	Populus trichocarpa	XP_002308508.1	AP2/ERF domain-containing transcription factor [Populus trichocarpa]	1.0e-32	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK16

Fln msg: your sequence is longer than subject: 233 - 178

Fln protein: MVKPSQKQNINVNGNPESRSLMSRQFKGIRLRKWGKWVSEIRMPNCRAKIWLGSYESPEKAARAYDFAAYCLRGSKARFNFPDSPPEIPCASSLSPSQIQAAAARFAAEEFRMPSDDDTALSSCGSVAESDLPPEIPCASSLSPPPIQAFAAQEFRLPSDEDTASSSCGSVAESNIDSQQISAEQGSAFWDSLFLEDLDNGESLNLEDFPPIDLAMDDLGFLLQPSEDWGIF*

Protein Length: 234

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATACTCATATGCACAAGTGTCAATTTTTTCACTTGCGGTGGAAATAGAAGCCTGCAGGTACCTCTAGGCGACCGGAGTTCAAATCCCGCACGATCACACTCCCTTCTTTTAACATTCCGAGTTCGAATCCCCTGAGACTTCTGGAA_-_ATGGTTAAGCCCTCGCAAAAACAGAATATCAATGTCAATGGCAACCCGGAAAGCCGCTCACTGATGTCGCGGCAATTCAAGGGAATCCGACTAAGAAAATGGGGAAAATGGGTGTCCGAAATTCGAATGCCCAATTGCAGGGCCAAAATTTGGCTGGGCTCCTACGAATCCCCAGAGAAAGCTGCCCGCGCCTATGACTTTGCAGCGTATTGTCTGAGAGGATCCAAGGCGAGGTTCAATTTTCCCGACTCACCGCCGGAAATTCCATGCGCCTCTTCTCTATCGCCGTCGCAAATCCAAGCCGCTGCGGCCCGGTTCGCCGCAGAAGAATTCCGGATGCCGTCAGATGACGACACGGCCTTATCGTCCTGCGGTTCTGTAGCGGAATCCGACTTGCCGCCGGAAATTCCATGCGCCTCTTCTCTATCGCCGCCGCCAATCCAAGCCTTCGCCGCACAAGAATTCCGGTTGCCGTCAGATGAGGACACGGCATCATCGTCCTGCGGTTCGGTAGCGGAATCCAACATTGACAGCCAACAGATTTCGGCGGAGCAGGGTTCGGCATTTTGGGATTCACTATTCCTGGAAGATCTGGATAATGGCGAGTCCCTAAATTTAGAGGATTTTCCTCCCATAGATTTGGCAATGGATGATTTGGGTTTTCTTCTTCAGCCGTCCGAAGACTGGGGGATTTTCTAA___ACAAAAATCTAAGTTTGGCACGGCTGCCTGAAATTTTGGCATGAAACTTTGATTAATGTAGATTCTCATTTGCTGAAGTTTGGATGAGATTTCTAAGGGATTGCAACAATGGAAAACTGAAATTGTTGCCTCCTTCGACAAATTATAGTCAGCCGCAGGCGCTTGAAATGGCGGCAAATGCGGCTTTGTTATTAATTGTCTGTAAATAACATTTAAATTTGATGATTCGTTTAAAAAAAGA

Fln Alignment:

Contig11162___MVKPSQKQNINVNGNPESRSLMSRQFKGIRLRKWGKWVSEIRMPNCRAKIWLGSYESPEKAARAYDFAAYCLRGSKARFNFPDSPPEIPCASSLSPSQIQXXXXXXXXXXXXMPSDDDTALSSCGSVAESDLPPEIPCASSLSPPPIQAFAAQEFRLPSDEDTASSSCGSVAESNIDSQQISAEQGSAFWDSLFLEDLDNGESLNLEDFPPIDLAMDDLGFLLQ
A9NK16_______________MGKPLPKQS--THRGPENSPSKSRQFKGIRLRKWGKWVSEIRMPNSRAKIWLGSYDSPEKAARAYDFAVYCLRGSKAAFNFPDSPPQIPCASSLSPPQIQAAAARFATEDFRPPSEDDAASSSSPSEAES-------C-------------------------------------IDDQQISAEQGPAFWDSLLLEDLDSGESLNLEDFPPLYFSMDDFGVLFE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
891		42		57	1.0
959	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain