SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10966

Length: 3075 nt

UniGene Fasta

>sp_v3.0_unigene10966
TACTATTGGGGGTCCTCAACTGAATGGGGACTGAACCCACAGCCTGTATTGACTCATTAGTGACAACTATGCCTTCAAGATTAATTTTTGTGTTAATACAGGTTTTGGGGTTGTTTCTTGAACCCTTGAGAGGGGAGGTTTATGTTGTATTGATGAGAGATGAACCTGTGGTCTCTTACAAGGGTTCAATTCCAGGATATCCTGCTACTGGATCGTTCTCAGGCATCAAGGTTGATGTCACCAGCCAATATGTAGAGTTATACCGGAACTATTTGATCAAAAGCCACAATATGGTACTCCAGAATACTCTCCAAAAGGGCACATACAGTAAATTGTATAGTTATCATCACCTTGTCAATGGTTTTGCTGTGGAGACTAATTCGGCTGAGGCAGCAGAACGCTTGGCAGTGGCAGAAGGGGTAAGGTGCATTCAGAAAGACAGAAAGATTGAAAAACTGACCACCCACACCCCTGATTTCCTAGGTATTTCCTCTCATGTGTGGCCTCTACTCGGTGGTGCTCGGAACTCAGGGGAAGGAGTGGTGATTGGGATGATTGACAGTGGTATCGACCCCATTCATCCGAGCTTCTCCAACTCTCAGTTTAGTGAAGGAGCACTTTCCAGGGGACGCCATAATCCCAAAAACAGACACAGGAATTACACTGGTAAATGCGAGATGGCCAAAGAATTCCCAAAAGGTTCTTGCAATGGGAAGATCATAGGTGCACAGCATTTTGATTTATCAATAAAAGCAGCAGGCCAATTCAATGTTACAGCAGATTCTGCTTCTCCTTTCGATACCGGTGGCCATGGAAGCCATACAGCCTCAACTGCCGCTGGAAATCATGGAGTTCCCGTGACTGTAAATGGTTTCAACTACGGATTTGCAAGTGGCATGGCACCTGGTGCTCGGATTGCGGTCTATAAAGCGATTTATTCCATGGGAGGATACTTGGCAGATGTGGTAGCTGCAATTGATCAGGCAGTAGAGGACGGAGTAGACATACTGAGCCTGTCAATAGGTCCATCAAGTATTAGCTCGGATGTTTCAACATTTTTGGATGTCCTGGACGTTGAGCTCCTTTACGCGGTAAAAGCAGGTGTTTTCGTTGTTCAAGCAGGTGGTAATAACGGGCCCGTTGCCAGCAGTGTGCTGTCCTTCAGTCCATGGATCTCCACAGTCGCTGCTTCGCTCACAGACAGAACATATAACAACTTCGTTGAACTAGGCAATGGGCAAAAATATGCTGGGCTTGGTCTTTCTCCTCCCACTAAAGGAGAATCAGAATATTACAGAATGGTGACTGCCATGGACGCCTTTGACAAGAACAGTTCTTACAGCGGAGTGAATACTTGCCAGTATCCGGAAGCCTTCATCAAGAAAGTAGTTGAGGGGAACATTTTAATCTGCAGCTATACTATTGACTTCGACCTGGAAGTGGCCAGCATAACGACAGTTTCAGACACTGCTCAGAAATTGGGTGCCGCAGGATTTGTGATGACAGTAGATCCCACTTTTGGATCGCTGTCTTTTAGGAGCGGCCCTGCTATTTTTACAAGCCCTGGGACAATTGTCCTGGACGAGCAGTCTTCTTTGAACCTGTTGACGTATTACAGTAACAATACCAGGCGCGATGCAAGTGGCTCCGTCGTAGAATTTGGAGCAACAGCTAGAATTGGGGATGGGCGAGTTGCGGCATACAGTGGCGAGGGCCCAACGGTTGCTTCCTATTCTTCTCGAGGACCTGATCTCAACAATAAAGCTGGGCAATTTGCTGATGTCCTCAAACCAAATATAATGGCTCCCGGCCACCTTATATGGGCTGCTTGGAGCCCAACCAGCGTTGATGACAAAGTCTTCCGAGAGCAGAACTTCGCAATGGTCTCAGGCACCAGTATGGCGACACCCCATGTGGCAGGAGTCGCAGCGATGATCAAACAGAATCATCCGGATTGGAGTTCAGCTGCTATTTCTTCCGCTATGATGACGACTGCATCAACGGCAGATCGCTTTGGAAAACCGATTCTTGCACAGAGTCCGTGGGGAAATATATCTGCCCAGTTGGGGAATCTCGCCGGGGCTGCCACCCAGTTCGATTATGGTGCAGGTCTCATCAATCCTGCAAGGGCTATGGATCCGGGCCTCGTTTTTGATGCGGATTTTGATGATTATATGAGTTTCTTATGCTCTCTCCCTGGAGTGGACGAGGCCTCTGTGCGTGAGGCAACAGGAATGGGATGCTCATCAAGAATGACTTGGGCCTCAGATCTGAATACTGCTTCAATCACAGTCGGGAATCTTATGGGCTCTAGGAAAGTGCATCGCGTGGTGAAGAATGTAGCTGCAGATTATTCAAAAGAGGTGTACGAGGCCAACATTACAGAGCCAGAGGGTGTGAAGGTCAAAGTAAAGCCTCGTAAATTCACCATACACAAGGGCTCATCTAAATCGTTATTGGTGACCTTAAAAGTGAAGGTGGCTACAGGCACGTTTGTATTTGGAGAGATTGTGTTGACTGGTAACAGAGGCCACCTTGTTAGTATTCCTCTCGCTGTGTGTCCCACCTCTGTCATTGGGTGATAACAAGTGAACAACCAATCACTTAGCATGTATTCTGCCAATCCCAGATATTTGTTGGATGAGTGTGTTCATTAAGAAACATACTAAATTGAAAAGCTCTATCAATTTATCTTAACTGGACGCTGACCAGGATGGGCAGCAGTCAAAAATGAAAAAAATTGTATTGCAGCTCACTCTCATAATTATGTGTTCTGGTTCTGGCAAATATTTTTCTCTAGCTTCTAAAGAAATAGAGAGAAGAGGTTTTAACTCCAGAACCATGGATAAAAATCATTGTTCAGTTCCATTGAAAGAAAAACGGGAAAGCGCTTTGTTCAGCGTTAAAGTAAAATGTCCTATGGACTCCCCGTTTCATCCTCTGTGTTTGTTTCATTAAAAGAACCAGTCCCTCTTCCCCATTCAGTATAGGGTATATTTTTCCATACCCGTTTCATCCTGTGTTTCTTTCATTAAAAGAACCATTCCCTCTTTAGGGTTCCTTCTAAAAAAAAAA

Ace file of the UniGene sp_v3.0_unigene10966

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptidase, putative n=1 Tax=Ricinus communis RepID=B9SEE1_RICCO	-	-	0.0	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Sma3	Peptidase, putative	-	-	2.347e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cucumisin.	EC:3.4.21.25	-	5.632e-08	-

Source	Gene names
Sma3	17L07.9; AT4g20430; AT4g30020; At1g30600; At2g19170; At4g20430; At4g30020; At5g44530; B1143G03.30; F6G3.50; F9F13.80; GSVIVT00009267001; GSVIVT00009901001; GSVIVT00011508001; GSVIVT00012844001; GSVIVT00035189001; LIM9; MSP; OSJNBb0038F03.4; Os01g0769200;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	cuticle development	GO:0042335	Biological Process	-
Sma3	negative regulation of catalytic activity	GO:0043086	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	Peptidase S8A, DUF1034 C-terminal	IPR010435	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G19170.1	SLP3 subtilisin-like serine protease 3 chr2:8314154-8317620 REVERSE LENGTH=815	46%
RefSeq	Arabidopsis thaliana	NP_565447.1	subtilisin-like serine protease 3 [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002326675.1	predicted protein [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQQ7

Fln msg: your sequence is longer than subject: 853 - 772

Fln protein: MGTEPTACIDSLVTTMPSRLIFVLIQVLGLFLEPLRGEVYVVLMRDEPVVSYKGSIPGYPATGSFSGIKVDVTSQYVELYRNYLIKSHNMVLQNTLQKGTYSKLYSYHHLVNGFAVETNSAEAAERLAVAEGVRCIQKDRKIEKLTTHTPDFLGISSHVWPLLGGARNSGEGVVIGMIDSGIDPIHPSFSNSQFSEGALSRGRHNPKNRHRNYTGKCEMAKEFPKGSCNGKIIGAQHFDLSIKAAGQFNVTADSASPFDTGGHGSHTASTAAGNHGVPVTVNGFNYGFASGMAPGARIAVYKAIYSMGGYLADVVAAIDQAVEDGVDILSLSIGPSSISSDVSTFLDVLDVELLYAVKAGVFVVQAGGNNGPVASSVLSFSPWISTVAASLTDRTYNNFVELGNGQKYAGLGLSPPTKGESEYYRMVTAMDAFDKNSSYSGVNTCQYPEAFIKKVVEGNILICSYTIDFDLEVASITTVSDTAQKLGAAGFVMTVDPTFGSLSFRSGPAIFTSPGTIVLDEQSSLNLLTYYSNNTRRDASGSVVEFGATARIGDGRVAAYSGEGPTVASYSSRGPDLNNKAGQFADVLKPNIMAPGHLIWAAWSPTSVDDKVFREQNFAMVSGTSMATPHVAGVAAMIKQNHPDWSSAAISSAMMTTASTADRFGKPILAQSPWGNISAQLGNLAGAATQFDYGAGLINPARAMDPGLVFDADFDDYMSFLCSLPGVDEASVREATGMGCSSRMTWASDLNTASITVGNLMGSRKVHRVVKNVAADYSKEVYEANITEPEGVKVKVKPRKFTIHKGSSKSLLVTLKVKVATGTFVFGEIVLTGNRGHLVSIPLAVCPTSVIG*

Protein Length: 854

Fln nts: TACTATTGGGGGTCCTCAACTGA_-_ATGGGGACTGAACCCACAGCCTGTATTGACTCATTAGTGACAACTATGCCTTCAAGATTAATTTTTGTGTTAATACAGGTTTTGGGGTTGTTTCTTGAACCCTTGAGAGGGGAGGTTTATGTTGTATTGATGAGAGATGAACCTGTGGTCTCTTACAAGGGTTCAATTCCAGGATATCCTGCTACTGGATCGTTCTCAGGCATCAAGGTTGATGTCACCAGCCAATATGTAGAGTTATACCGGAACTATTTGATCAAAAGCCACAATATGGTACTCCAGAATACTCTCCAAAAGGGCACATACAGTAAATTGTATAGTTATCATCACCTTGTCAATGGTTTTGCTGTGGAGACTAATTCGGCTGAGGCAGCAGAACGCTTGGCAGTGGCAGAAGGGGTAAGGTGCATTCAGAAAGACAGAAAGATTGAAAAACTGACCACCCACACCCCTGATTTCCTAGGTATTTCCTCTCATGTGTGGCCTCTACTCGGTGGTGCTCGGAACTCAGGGGAAGGAGTGGTGATTGGGATGATTGACAGTGGTATCGACCCCATTCATCCGAGCTTCTCCAACTCTCAGTTTAGTGAAGGAGCACTTTCCAGGGGACGCCATAATCCCAAAAACAGACACAGGAATTACACTGGTAAATGCGAGATGGCCAAAGAATTCCCAAAAGGTTCTTGCAATGGGAAGATCATAGGTGCACAGCATTTTGATTTATCAATAAAAGCAGCAGGCCAATTCAATGTTACAGCAGATTCTGCTTCTCCTTTCGATACCGGTGGCCATGGAAGCCATACAGCCTCAACTGCCGCTGGAAATCATGGAGTTCCCGTGACTGTAAATGGTTTCAACTACGGATTTGCAAGTGGCATGGCACCTGGTGCTCGGATTGCGGTCTATAAAGCGATTTATTCCATGGGAGGATACTTGGCAGATGTGGTAGCTGCAATTGATCAGGCAGTAGAGGACGGAGTAGACATACTGAGCCTGTCAATAGGTCCATCAAGTATTAGCTCGGATGTTTCAACATTTTTGGATGTCCTGGACGTTGAGCTCCTTTACGCGGTAAAAGCAGGTGTTTTCGTTGTTCAAGCAGGTGGTAATAACGGGCCCGTTGCCAGCAGTGTGCTGTCCTTCAGTCCATGGATCTCCACAGTCGCTGCTTCGCTCACAGACAGAACATATAACAACTTCGTTGAACTAGGCAATGGGCAAAAATATGCTGGGCTTGGTCTTTCTCCTCCCACTAAAGGAGAATCAGAATATTACAGAATGGTGACTGCCATGGACGCCTTTGACAAGAACAGTTCTTACAGCGGAGTGAATACTTGCCAGTATCCGGAAGCCTTCATCAAGAAAGTAGTTGAGGGGAACATTTTAATCTGCAGCTATACTATTGACTTCGACCTGGAAGTGGCCAGCATAACGACAGTTTCAGACACTGCTCAGAAATTGGGTGCCGCAGGATTTGTGATGACAGTAGATCCCACTTTTGGATCGCTGTCTTTTAGGAGCGGCCCTGCTATTTTTACAAGCCCTGGGACAATTGTCCTGGACGAGCAGTCTTCTTTGAACCTGTTGACGTATTACAGTAACAATACCAGGCGCGATGCAAGTGGCTCCGTCGTAGAATTTGGAGCAACAGCTAGAATTGGGGATGGGCGAGTTGCGGCATACAGTGGCGAGGGCCCAACGGTTGCTTCCTATTCTTCTCGAGGACCTGATCTCAACAATAAAGCTGGGCAATTTGCTGATGTCCTCAAACCAAATATAATGGCTCCCGGCCACCTTATATGGGCTGCTTGGAGCCCAACCAGCGTTGATGACAAAGTCTTCCGAGAGCAGAACTTCGCAATGGTCTCAGGCACCAGTATGGCGACACCCCATGTGGCAGGAGTCGCAGCGATGATCAAACAGAATCATCCGGATTGGAGTTCAGCTGCTATTTCTTCCGCTATGATGACGACTGCATCAACGGCAGATCGCTTTGGAAAACCGATTCTTGCACAGAGTCCGTGGGGAAATATATCTGCCCAGTTGGGGAATCTCGCCGGGGCTGCCACCCAGTTCGATTATGGTGCAGGTCTCATCAATCCTGCAAGGGCTATGGATCCGGGCCTCGTTTTTGATGCGGATTTTGATGATTATATGAGTTTCTTATGCTCTCTCCCTGGAGTGGACGAGGCCTCTGTGCGTGAGGCAACAGGAATGGGATGCTCATCAAGAATGACTTGGGCCTCAGATCTGAATACTGCTTCAATCACAGTCGGGAATCTTATGGGCTCTAGGAAAGTGCATCGCGTGGTGAAGAATGTAGCTGCAGATTATTCAAAAGAGGTGTACGAGGCCAACATTACAGAGCCAGAGGGTGTGAAGGTCAAAGTAAAGCCTCGTAAATTCACCATACACAAGGGCTCATCTAAATCGTTATTGGTGACCTTAAAAGTGAAGGTGGCTACAGGCACGTTTGTATTTGGAGAGATTGTGTTGACTGGTAACAGAGGCCACCTTGTTAGTATTCCTCTCGCTGTGTGTCCCACCTCTGTCATTGGGTGA___TAACAAGTGAACAACCAATCACTTAGCATGTATTCTGCCAATCCCAGATATTTGTTGGATGAGTGTGTTCATTAAGAAACATACTAAATTGAAAAGCTCTATCAATTTATCTTAACTGGACGCTGACCAGGATGGGCAGCAGTCAAAAATGAAAAAAATTGTATTGCAGCTCACTCTCATAATTATGTGTTCTGGTTCTGGCAAATATTTTTCTCTAGCTTCTAAAGAAATAGAGAGAAGAGGTTTTAACTCCAGAACCATGGATAAAAATCATTGTTCAGTTCCATTGAAAGAAAAACGGGAAAGCGCTTTGTTCAGCGTTAAAGTAAAATGTCCTATGGACTCCCCGTTTCATCCTCTGTGTTTGTTTCATTAAAAGAACCAGTCCCTCTTCCCCATTCAGTATAGGGTATATTTTTCCATACCCGTTTCATCCTGTGTTTCTTTCATTAAAAGAACCATTCCCTCTTTAGGGTTCCTTCTAAAAAAAAAA

Fln Alignment:

Contig10966___LYSYHHLVNGFAVETNSAEAAERLAVAEGVRCIQKDRKIEKLTTHTPDFLGISS--HVWPLLGGARNSGEGVVIGMIDSGIDPIHPSFSNSQFSEGALSRGRHNPKNRHRNYTGKCEMAKEFPKGSCNGKIIGAQHFDLSIKAA-GQFNVTADSASPFDTGGHGSHTASTAAGNHGVPVTVNGFNYGFASGMAPGARIAVYKAIYSMGGYLADVVAAIDQAVEDGVXXXXXXXXXXXXXXXXXTFLDVLDVELLYAVKAGVFVVQAGGNNGPVASSVLSFSPWISTVAASLTDRTYNNFVELGNGQKYAGLGLSPPTKGESEYYRMVTAMDAFDKNSSYSGVNTCQYPEAFIKKVVEGNILICSYTIDFDLEVASITTVSDTAQKLGAAGFVMTVDPTFGSLSFRSGPAIFTS--PGTIVLDEQSSLNLLTYYSNNTRRDASGSVVEFGATARIGDGRVAAYSGEGPTVASYSSRGPDLNNKAGQFADVLKPNIMAPGHLIWAAW----SPTS-VDDKVFREQNFAMVSGTSMATPHVAGVAAMIKQNHPDWXXXXXXXXXXXXXXXXDRFGKPILAQSPWGNISAQLGNLAGAATQFDYGAGLINPARAMDPGLVFDADFDDYMSFLCSLP-GVDEASVREATGMGCSSRMTWASDLNTASITVGNLMGS--RKVHRVVKNVAADYSKEVYEANITEPEGVKVKVKPRKFTIHKGSSK-SLLVTLKVKVAT
B8LQQ7_______________LYMYDTVMHGFSAKLTST-GAQAMENIDGCLAVFPDSLSRLHTTRTPDFLGLNSIDGLWP----QSHYGEDVIVGLLDTGVWPESKSFSD----EGLTSRVP-------AKWKGECEVGSDFNASHCNNKLIGARYFVKGYEAMYGRIDKKEDYRSPRDADGHGTHTSSTAAGSEVPGASLFGFARGTARGIATKARLAVYKVCWAVTCVNSDVLAGMEAAVADGVDLLSLSLGIVDDVPY---YHDTIAIGALGAIEKGVFVSCSAGNAGPYA--IFNTAPWITTVGASTIDREFPAPVVLGNGKSYMGSSLDKDKTLAKEQLPLVYGKTASSKQYANFCIDGSLDPD-----MVRGKIVLC------DLEEGGRIEKGLVVRRAGGAGMILA-----SQFKEEDYSATYSNLLPATMV-DLKAGEYIKAYM--NTTRNPLATIKTEGLTV-IGKAR-------APVVIAFSSRGP--NRVA---PEILKPDLVAPGVNILAAWTGHTSPTGLISDK--RRVDFNIISGTSMSCPHVAGIAALIRSAHPAWTPAAIKSALMTSSALFDNRKSPIS-----DSITAL------PADALAMGAGHVNPNAALDPGLVYDLGIDDYVSFLCSLNYTAKHIQILTKNATSCPKLRSRPGDLNYPSFSVVFKPRSLVRVTRRTVTNVGG--APSVYEMAVESPENVNVIVEPRTLAFTKQNEKATYTVRFESKIAS

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1433	80		20		0.995493
1504	83		16		0.994512
2388		85	14		0.993533
2401	87		12		0.992554
2425		12		87	0.992554
2979		80	20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain