SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10728

Length: 1045 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10728

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	rve domain containing protein	-	-	5.0e-20	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	25%

Source	Gene names
Sma3	GSVIVT00000833001;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-

Full-Lengther Next Prediction

SNPs (tot: 73)

Position	A %	C %	G %	T %	Probability
540	75		25		1.0
541	25		75		1.0
543		17		82	1.0
567		87		12	0.999964
592		80		20	1.0
606		86		13	0.999973
619		85		14	0.999981
624	61		38		1.0
633	38		61		1.0
634		84		15	0.999986
639	7	15	76		0.999983
640	76		23		1.0
646		61		38	1.0
652	23		76		1.0
657	61	38			1.0
666	45		45	9	1.0
681	54		45		1.0
684	81		18		0.999994
702	15		84		0.999986
705	30		69		1.0
708	76		23		1.0
726	25	75			1.0
735	18		81		0.999994
748	9		72	18	0.999994
750	36		54	9	1.0
758	20	80			0.999996
762	30		70		1.0
772		22		77	0.999999
775	88		11		0.923564
777	77		22		0.999999
792	57		42		1.0
799		50		50	1.0
807	10	90			0.90298
814		88		11	0.923564
834	33		66		1.0
837	33		66		1.0
846		30		70	1.0
849		10		90	0.90298
850	10		90		0.90298
852	80		20		0.999996
859		90		10	0.90298
861		60		40	1.0
864		10		90	0.90298
865		90		10	0.90298
867	20		80		0.999996
874		10	90		0.90298
882	80		20		0.999996
884		90		10	0.90298
888		90		10	0.90298
889		70		30	1.0
900	70	30			1.0
905	20		80		0.999996
907	10	90			0.90298
918			90	10	0.90298
926	12		87		0.992554
933			12	87	0.992554
938		87		12	0.992554
939	12	75	12		0.975346
956	12	87			0.992554
958	25			75	1.0
961	87		12		0.992554
972	87		12		0.992554
976	75			25	1.0
978	12		87		0.992554
984	75	25			1.0
990	25		75		1.0
993	12			87	0.992554
994			75	25	1.0
1000	75			25	1.0
1004	12	87			0.992554
1008	28		71		1.0
1013		66		33	1.0
1014	33	66			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain