SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10727

Length: 2413 nt

UniGene Fasta

>sp_v3.0_unigene10727
CCCATAAGAGAGGATCAGCGGCTTTGCGGCCATCCAAAAACCGACCTAATGATGAAGCTGACTCCAAAAGTAAGGACTCGAGGATTTAAATGACGGAGTGCGAACTTGTTTTTCCCTCGTTTGATCGAAATCGAGGATTTAAATGACACAGTGCGAACTTGTTTTTCCCTCGTTTGATCGAATACGTAAACTTTTCAAAGTTGCAGGGCTTAAAATTTTTAACATATTACAATGCGATTGATCACATTTTCATTTTCAGTCACAAACTTGTCAAGCTCCATTTAAATCATTCGAACTGAAACTCTATTAGAAGTGTCAAGAGAGGCATTGTTTACTGTATTCTGCGAGAGAAGAAGGAAAGGGAAAGTGATGGGCGATCTTAGCAGAAGGGCAACAGATCACGCATTGCGATGTTGGAGCAATCTCACCAAACGCCTCCGTTTCGGATTGCAAAATCTATTCAAAGCTTCATTCTTGTATGTCTTTGGCAGAAGCGGAAGAAGGCGAAAGCGCAGTCTTCCTTTACCTTCGCCATCGAGACATTTGCCTTCCACCATATCATCGATGAAGGTGGTGGATAAAGCTACTGAGCTACTAGAGGAAACTTCTGAACAGATCTTATCAAACTTACATGATGTGCAAAAGAACTTGCTTTTTTGGCAATCACGGGCAGAGGGTACATATTCTCAAAAAGTGCATTTTATGGTTTTTGAAAGAGGGCCATTGGCATTTGTTGAAGGTACCATAGACCTGGTGCGTAGGTTCATTACTGAGGGTTCTCCCATGCAGCGTCTGGCTAATGCTGCTGCTTTTGAAATTTCCGAAAGAGTTACAATTCTGACAACTGTACAGAGGAATCTTGCAACGCTTCTTGCCGAGATTCACAAGGAGATTGCTAGTTTTAGAGAAGAGGTTGTTAAAGAATTCAATCGGAAGGCAATGTCTTCTGTGCTGGTTGCTATTCGCAAAGCTATGGTTGGATTGGAAAATATACCTCTTCCTCAGAGTGATTACTCTCCTGTTAATGATGGAACTCAAAATGTTGGTTTTCAATTTGAGGAATTGCCTGAGGGACTTCAGGACAAATCTGAGTGGACAGATGCCGAGATGCAGCTTGCTGTTGACCTGATATATTCTAATCTCAAGACACTCAATCAATGCTTGTCTCAAATTGTTTCAAAGTGTAGGAGGCCGAGGAGGGCAGAAAGGTTGTGGCTACGATATATGGGAACTGTAGTTGGCCTTGCATTTTGTTCAGCATGGCTGTTACGGCATAGCAGGTTGATGGGCAGTACTGATCTTGATGACTGGATCAGCGAAGGCAGAGATTCTATCATTGCATTTTGGAAAGAACATGTTGAGCTACCGCTTCTGTCAATCAGGAATGAGCTGTTTGAGACATTCAGAAGACGTCATAAGGGTGTAGTGGAACCTGAAGAAGTACAGTTGACGGCAAATTCACTCCATAGAATGCTACTGGATTTTACCAAACATACAACTAGGGGAAAGGTTCCTGAAGGAGCATCCGAACAAGAAATGATGGAAATAGTGATGGCAAGGTATGAGAAGGAGGTTATCAATCCTCTTCAAAACCTTGTCGGGGGAGAGCTTGCTCGAGCTTTACTTATTCAGATACAAAAGTTGAAGCTTGATATTGAAACGGCAATGCTTGAGATGGATCAGATTCTCAAGGCAAATGAAATTAACTTTGCAATGCTCGCTGCTTTGCCAGCACTTTTCATTACTGTCATTTTGGCATCCATAGTGCGATTGTGGTTGATGAAGGACAAAGGAGCAGAGGGCAGTGGAAGAGCTGCTAGACTCCAAAGGAGGCTACTCCTAGTAGACGCAGAAAGAAAGATAATCGAATACCAAGTGCTTATGGATCGACAGGAGGAAAATGCTATCTGGACTTTTGGAATGATACTTTATACACTTGACCGCTTGTATAAGGCCACAGAAAGGCATGCAAGCGCAACTGGTGAATGGCAAAGTTTGCGTGCAGATATTCTTGATTTGGCAAATCCAAGGCTTGCTGCGCACTATAAGCTTGCAATCACAGCCCGAATGACACGTGTATATGAATGCCTCCTTCCTTTGTCAAGAGGATTGTTGTGATGTGTTCTGTAGAAAGCAATACTTCAATTCTATTGTTCGTCAATATGAATTTTGATCTTTCTCCTTCACGAAATTATTACTGGTTAAAATTTTTTGGATCATTCTGGCGGTTTGCTTCTACGCTTTCTGACACAAATGGAGCATCCTTGTGATTGCCACTTATCTAGTATTTTGATATTCACAAAAATATCTCCTTTCAGTTGATGAGCAGTAAAATTTCCGTGGTATGATTAATGTTAAAAGACTGAACTAATGATCATTAAGTTTGCCTCTAGGTATACCCTTTTTATTTAAT

Ace file of the UniGene sp_v3.0_unigene10727

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	dgd1 suppressor 1 [Arabidopsis thaliana] gb\|AAO00810.1\| putative protein [Arabidopsis thaliana] gb\|AAP37724.1\| At5g12290 [Arabidopsis thaliana] gb\|AED91788.1\| dgd1 suppressor 1 [Arabidopsis thaliana]	-	-	0.0	43%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	55%
Sma3	Putative uncharacterized protein At5g12290	-	-	1.475e-09	-

Source	Gene names
Sma3	At5g12290; GSVIVT00010094001; GSVIVT00017309001; LOC_Os03g26000; LOC_Os03g26030; OSJNBb0048D20.2; Os03g0377500; OsI_11793; OsI_11794; OsJ_11038; OsJ_11039; PHYPADRAFT_140038; POPTRDRAFT_876760; RCOM_0785080;

Source	GOs	Term	Type	Identity
Sma3	mitochondrial outer membrane	GO:0005741	Cellular Component	-
Sma3	galactolipid biosynthetic process	GO:0019375	Biological Process	-
Sma3	hydrogen peroxide biosynthetic process	GO:0050665	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Nuclear control of ATP synthase 2	IPR013946	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G12290.1	DGS1 dgd1 suppressor 1 chr5:3974374-3978066 REVERSE LENGTH=602	47%
RefSeq	Arabidopsis thaliana	NP_568262.2	dgd1 suppressor 1 [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002313474.1	predicted protein [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HAF6

Fln msg: your sequence is longer than subject: 583 - 518

Fln protein: MGDLSRRATDHALRCWSNLTKRLRFGLQNLFKASFLYVFGRSGRRRKRSLPLPSPSRHLPSTISSMKVVDKATELLEETSEQILSNLHDVQKNLLFWQSRAEGTYSQKVHFMVFERGPLAFVEGTIDLVRRFITEGSPMQRLANAAAFEISERVTILTTVQRNLATLLAEIHKEIASFREEVVKEFNRKAMSSVLVAIRKAMVGLENIPLPQSDYSPVNDGTQNVGFQFEELPEGLQDKSEWTDAEMQLAVDLIYSNLKTLNQCLSQIVSKCRRPRRAERLWLRYMGTVVGLAFCSAWLLRHSRLMGSTDLDDWISEGRDSIIAFWKEHVELPLLSIRNELFETFRRRHKGVVEPEEVQLTANSLHRMLLDFTKHTTRGKVPEGASEQEMMEIVMARYEKEVINPLQNLVGGELARALLIQIQKLKLDIETAMLEMDQILKANEINFAMLAALPALFITVILASIVRLWLMKDKGAEGSGRAARLQRRLLLVDAERKIIEYQVLMDRQEENAIWTFGMILYTLDRLYKATERHASATGEWQSLRADILDLANPRLAAHYKLAITARMTRVYECLLPLSRGLL*

Protein Length: 584

Fln nts: CCCATAAGAGAGGATCAGCGGCTTTGCGGCCATCCAAAAACCGACCTAATGATGAAGCTGACTCCAAAAGTAAGGACTCGAGGATTTAAATGACGGAGTGCGAACTTGTTTTTCCCTCGTTTGATCGAAATCGAGGATTTAAATGACACAGTGCGAACTTGTTTTTCCCTCGTTTGATCGAATACGTAAACTTTTCAAAGTTGCAGGGCTTAAAATTTTTAACATATTACAATGCGATTGATCACATTTTCATTTTCAGTCACAAACTTGTCAAGCTCCATTTAAATCATTCGAACTGAAACTCTATTAGAAGTGTCAAGAGAGGCATTGTTTACTGTATTCTGCGAGAGAAGAAGGAAAGGGAAAGTG_-_ATGGGCGATCTTAGCAGAAGGGCAACAGATCACGCATTGCGATGTTGGAGCAATCTCACCAAACGCCTCCGTTTCGGATTGCAAAATCTATTCAAAGCTTCATTCTTGTATGTCTTTGGCAGAAGCGGAAGAAGGCGAAAGCGCAGTCTTCCTTTACCTTCGCCATCGAGACATTTGCCTTCCACCATATCATCGATGAAGGTGGTGGATAAAGCTACTGAGCTACTAGAGGAAACTTCTGAACAGATCTTATCAAACTTACATGATGTGCAAAAGAACTTGCTTTTTTGGCAATCACGGGCAGAGGGTACATATTCTCAAAAAGTGCATTTTATGGTTTTTGAAAGAGGGCCATTGGCATTTGTTGAAGGTACCATAGACCTGGTGCGTAGGTTCATTACTGAGGGTTCTCCCATGCAGCGTCTGGCTAATGCTGCTGCTTTTGAAATTTCCGAAAGAGTTACAATTCTGACAACTGTACAGAGGAATCTTGCAACGCTTCTTGCCGAGATTCACAAGGAGATTGCTAGTTTTAGAGAAGAGGTTGTTAAAGAATTCAATCGGAAGGCAATGTCTTCTGTGCTGGTTGCTATTCGCAAAGCTATGGTTGGATTGGAAAATATACCTCTTCCTCAGAGTGATTACTCTCCTGTTAATGATGGAACTCAAAATGTTGGTTTTCAATTTGAGGAATTGCCTGAGGGACTTCAGGACAAATCTGAGTGGACAGATGCCGAGATGCAGCTTGCTGTTGACCTGATATATTCTAATCTCAAGACACTCAATCAATGCTTGTCTCAAATTGTTTCAAAGTGTAGGAGGCCGAGGAGGGCAGAAAGGTTGTGGCTACGATATATGGGAACTGTAGTTGGCCTTGCATTTTGTTCAGCATGGCTGTTACGGCATAGCAGGTTGATGGGCAGTACTGATCTTGATGACTGGATCAGCGAAGGCAGAGATTCTATCATTGCATTTTGGAAAGAACATGTTGAGCTACCGCTTCTGTCAATCAGGAATGAGCTGTTTGAGACATTCAGAAGACGTCATAAGGGTGTAGTGGAACCTGAAGAAGTACAGTTGACGGCAAATTCACTCCATAGAATGCTACTGGATTTTACCAAACATACAACTAGGGGAAAGGTTCCTGAAGGAGCATCCGAACAAGAAATGATGGAAATAGTGATGGCAAGGTATGAGAAGGAGGTTATCAATCCTCTTCAAAACCTTGTCGGGGGAGAGCTTGCTCGAGCTTTACTTATTCAGATACAAAAGTTGAAGCTTGATATTGAAACGGCAATGCTTGAGATGGATCAGATTCTCAAGGCAAATGAAATTAACTTTGCAATGCTCGCTGCTTTGCCAGCACTTTTCATTACTGTCATTTTGGCATCCATAGTGCGATTGTGGTTGATGAAGGACAAAGGAGCAGAGGGCAGTGGAAGAGCTGCTAGACTCCAAAGGAGGCTACTCCTAGTAGACGCAGAAAGAAAGATAATCGAATACCAAGTGCTTATGGATCGACAGGAGGAAAATGCTATCTGGACTTTTGGAATGATACTTTATACACTTGACCGCTTGTATAAGGCCACAGAAAGGCATGCAAGCGCAACTGGTGAATGGCAAAGTTTGCGTGCAGATATTCTTGATTTGGCAAATCCAAGGCTTGCTGCGCACTATAAGCTTGCAATCACAGCCCGAATGACACGTGTATATGAATGCCTCCTTCCTTTGTCAAGAGGATTGTTGTGA___TGTGTTCTGTAGAAAGCAATACTTCAATTCTATTGTTCGTCAATATGAATTTTGATCTTTCTCCTTCACGAAATTATTACTGGTTAAAATTTTTTGGATCATTCTGGCGGTTTGCTTCTACGCTTTCTGACACAAATGGAGCATCCTTGTGATTGCCACTTATCTAGTATTTTGATATTCACAAAAATATCTCCTTTCAGTTGATGAGCAGTAAAATTTCCGTGGTATGATTAATGTTAAAAGACTGAACTAATGATCATTAAGTTTGCCTCTAGGTATACCCTTTTTATTTAAT

Fln Alignment:

Contig10727___ELLEETSEQILSNLHDVQKNLLFWQSRAEGTYSQKVHFMVFERGPLAFVEGTIDLVRRFITEGSPMQRLANAAAFEISERVTILTTVQRNLATLLAEIHKEIASFREEVVKEFNRKAMSSVLVAIRKAMVGLENI-----PLPQSDYSPVNDGTQNVGFQFEELPEGLQDKSEWTDAEMQLAVDLIYSNLKTLNQCLSQIVSKCXXXXXXXXXXXXYMGTVVGLAFCSAWLLRHSRLMGSTDLDDWISEGRDSIIAFWKEHVELPLLSIRNELFETFRRRHKGVVEPEEVQLTANSLHRMLLDFTKHTTRGKVPEGASEQEMMEIVMARYEKEVINPLQNLVGGELARAXXXXXXXXXXDIETAMLEMDQILKANEINFAMLAALPALFITVILASIVRLWLMKDKGAEGSGXXXXXXXXXXXVDAERKIIEYQVLMDR-QEENAIWTFGMILYTLDRLYKATERHASATGEWQSLRADILDLANPRLAAHYKLAITARMTRVYECLLP
F6HAF6_______________DVLEDILEHLFLNLHNIQKNLQFWQSRAEESNARKAYFMIFERGPRAFITRTVQFIRESVAQGSSLQLLSQSASAHISERITILTSLRYSLATFLAQVHIDIDKFGEELVND-PEKSLSSLLVTINGLFSKLEAAIGHLHATRQSDSSV--DGSYSFPLVFEKLPDVNQEGSQWTDCEIRDAINLIYQNLYKLDSYLSILVSKHRKPRKLTLYWIHYTCGAVGLSVCSVWLLRHSSLMGSNDIENWVREARDSTITFWNDHVEQPILSIRDELFETFRKRHRSVMELEDVQLTANSLHRMLLTFSEQTQGQKFPEHASDQQMLEIVMARYEKELMHPIQNLLKGELAHALLIQIQKLKLDIETAMLELNQILRANEINFAILAALPAFFVSLLLIMLVRAWVKQDTRAEGRGRVARIQRRLLVVEVEKWIMQYQTCMNQGKEKDAQCMFGMVLYSLDRLYRAVERHAKATGEWLCLRQDIVELAKPGLDTASKLILTARMERVYDCLLP

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
240			87	12	0.992554
270			62	37	1.0
1390		75		25	0.996473
1683	18		81		0.999994
1689		75	25		1.0
1725		10		90	0.90298
1729		90	10		0.90298
1731	90			10	0.90298
1737		10		90	0.90298
1738	10			90	0.90298
1746	10			90	0.90298
2197	87	12			0.992554
2213			28	57	1.0
2227			77	22	0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain