SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10691

Length: 2082 nt

UniGene Fasta

>sp_v3.0_unigene10691
AAGTACAGCTGGTGCGATCAGAATTACTTCCAAGGATTTTGAGAAGATACAGCAAGATTCAATATTTGGATTTATCTCTGTGCTGTCAGATCACAGATGAGAGTCTGGGGCATGTGGCAGGCATCCTTGGAAATCATTTGGTTTCCATCAATCTTTCCAAGTTGTGGACTTTCACTCACCTGGGTCTGCTTCAGTTGATTAAAAGTTGCCAGTCTTTAGTCGAAATTGATCTTTCCAATTGCGCTGAAATCACAGATTATGGGGCAGAAGCCATAGCACAAGCCCATGAGTTGCAATCATTGAAGCTAGTGAAATGTAAGCAGATTACTGACATGGGTCTTGGATGCATTGCTGTGGGCTGTAGTAAATTACAGACTTTGAATCTTAGGTGGTGTGTGGGGGTCACTGATCTTGGAGTTGAGCTGGTTGTTGTGAAATGTAAAGAGTTACGTAATCTTGATCTCTCTTACTCACAGATAACCAACAAATGCCTTGCCTCAATTAAGCATCTAAATCATCTTGAGAATTTAGCATTGGTTGGATGTGTTGGTGTGGGTGATAATGGCCTTACATATCTCAAAAAATCTTTGCAGAGACTTGATGTTTCAAAGTGTCGGAATGTTAGCTGCACTGGAATAATTTCCGTTGCAAGTGGTTCCTCAGACTTGCGTCAACTTACTCTTTCCTATTGCATACCAATTTCTGATGCTCTTCTTAAGAGCTTCCAAAACTGTGACAGATTACAAACAATCAAATTTGATGGTTGTGTCATTTCCAGCACAGCATTGGAATCAGTTGGGAAAAGCTGCAAGTCTTTGAGGGAGTTAAGCTTGAGCAAGTGTACTGGAGTCACAGATGAAGGACTGACTGCACTTGTGTCATGTTGTAGAGAGTTGAACAAGTTAGATCTCACCTGCTGCCGTGATCTAACTGATGTTGCTCTCTTGGCCATTGCAACATCATGCAGATATCTTTCATCCCTTAAGATGGAATCCAGCAGCTTGGTCACAGAAAGAAGTTTGACTATGTTAGGAGAAGGCTGTCCTTTCCTGAAGATCTTGACCTTACTGATTGTAGCACAAACAATACAGGATTGAAATCCCTATCTAAATGTTCGGAATTGGTCATGTTGAAACTAGGATTCTGCCCAAATATATCCAATGAAGGGATTGCCCATATAGGGGCACGTTGCTCATATCTGCAAGAACTTGATTTGTACAGATCTGTAGGAGTTGGAGATGTTGGATTAGCAGCAATTGCCAATGGTTGCCCAAAGTTAAAGAGTATTAATATTTCCTACTGCATAAATGTCACTGACAATGGTCTGATATCACTCGCTCAATTGCAAAAACTTCACCAGCTTGAAATTCGAGGTTGTTCCGGGATTTCCTCTGCTGGTCTTTCTGCAATTGCTTTAGGATGTAAACGCATCGTTGAGTTAGATATCAAAAGGTGCTACCGCGTGGATGATGTTGGAATATTAGCTGTAGCCAAGTCCTGCCAAAATTTGCGACAGATGAATGTCTCATACTGTTCAATCTCAGATGTTGGTTTGTTAGCACTGGCAAGTCTTAGATGCTTACAGAACATAAAGCTAGTTTATTTGAGGAATGTAACGGTCAATGGTTTCATGTATTTTCTGCTGGCTTGCAAAAGTTTGAAGAAACTTAAGCTTCTTCAATCCTTAAAGTTTAATTTACCACGAGTTCTGATTGAGATGTTGGAAGCCCATGGGTGCAATATTCGATGGATGGACAAGCCTTTTGTGGTATAAGATGCCCATCTTAACTAAGTGTTAATACTTGATTTTTTTCCGGAAAATGTAATATATATCTCAGAGGCCCCTTTAGCAGTAGTGTTTGTCCAACTCTAAACAAAGCAGTTTTGTGTAATGATGAATTTCTGTTTAAGCGTCGTGAGTCTATGAGTAATGTAGTGAGTGAATTATCTCATACAGTCCATCCTCTGAGAGATGAAATGAGTACCTAGGATATATAGGTACATTGTACATTGAAGAGTATTGTGTTTATATGTAGGCTTTTCTTTTGCCTTGCTTTTTGTGCAGTATGTTCTTTTTATTAC

Ace file of the UniGene sp_v3.0_unigene10691

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box/LRR-repeat protein 3 [Arabidopsis thaliana] sp\|Q8RWU5.1\|FBL3_ARATH RecName: Full=F-box/LRR-repeat protein 3 gb\|AAM14053.1\| putative F-box protein family, AtFBL3 [Arabidopsis thaliana] gb\|AAM67471.1\| putative F-box family protein AtFBL3 [Arabidopsis	-	-	0.0	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	28%
Sma3	Leucine Rich Repeat family protein, expressed	-	-	4.494e-06	-

Source	Gene names
Sma3	At5g01720; F7A7.240; FBL3; GSVIVT00022689001; GSVIVT00023993001; GSVIVT00037420001; LOC_Os11g01780; LOC_Os12g01760; LOC_Os12g36670; Os12g0108500; Os12g0552700; OsI_34818; OsI_37183; OsI_38675; OsJ_32666; OsJ_34957; OsJ_36445; PHYPADRAFT_147551; PHYPADRAFT

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease A	IPR001427	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Leucine-rich repeat, cysteine-containing subtype	IPR006553	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G01720.1	RNI-like superfamily protein chr5:267118-270391 REVERSE LENGTH=665	0.0	49%
RefSeq	Arabidopsis thaliana	NP_568094.2	F-box/LRR-repeat protein 3 [Arabidopsis thaliana]	0.0	49%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A998

Fln msg: Overlapping hits, possible frame ERROR between 1067 and 1046, W2: There is no M at the beginning, your sequence is longer than subject: 591 - 335

Fln protein: VQLVRSELLPRILRRYSKIQYLDLSLCCQITDESLGHVAGILGNHLVSINLSKLWTFTHLGLLQLIKSCQSLVEIDLSNCAEITDYGAEAIAQAHELQSLKLVKCKQITDMGLGCIAVGCSKLQTLNLRWCVGVTDLGVELVVVKCKELRNLDLSYSQITNKCLASIKHLNHLENLALVGCVGVGDNGLTYLKKSLQRLDVSKCRNVSCTGIISVASGSSDLRQLTLSYCIPISDALLKSFQNCDRLQTIKFDGCVISSTALESVGKSCKSLRELSLSKCTGVTDEGLTALVSCCRELNKLDLTCCRDLTDVALLAIATSCRYLSSLKMESSSLVTERSLTMLGEGCxxxxxxxxxDCSTNNTGLKSLSKCSELVMLKLGFCPNISNEGIAHIGARCSYLQELDLYRSVGVGDVGLAAIANGCPKLKSINISYCINVTDNGLISLAQLQKLHQLEIRGCSGISSAGLSAIALGCKRIVELDIKRCYRVDDVGILAVAKSCQNLRQMNVSYCSISDVGLLALASLRCLQNIKLVYLRNVTVNGFMYFLLACKSLKKLKLLQSLKFNLPRVLIEMLEAHGCNIRWMDKPFVV*

Protein Length: 592

Fln nts: AAGTACAGCTGGTGCGATCAGAATTACTTCCAAGGATTTTGAGAAGATACAGCAAGATTCAATATTTGGATTTATCTCTGTGCTGTCAGATCACAGATGAGAGTCTGGGGCATGTGGCAGGCATCCTTGGAAATCATTTGGTTTCCATCAATCTTTCCAAGTTGTGGACTTTCACTCACCTGGGTCTGCTTCAGTTGATTAAAAGTTGCCAGTCTTTAGTCGAAATTGATCTTTCCAATTGCGCTGAAATCACAGATTATGGGGCAGAAGCCATAGCACAAGCCCATGAGTTGCAATCATTGAAGCTAGTGAAATGTAAGCAGATTACTGACATGGGTCTTGGATGCATTGCTGTGGGCTGTAGTAAATTACAGACTTTGAATCTTAGGTGGTGTGTGGGGGTCACTGATCTTGGAGTTGAGCTGGTTGTTGTGAAATGTAAAGAGTTACGTAATCTTGATCTCTCTTACTCACAGATAACCAACAAATGCCTTGCCTCAATTAAGCATCTAAATCATCTTGAGAATTTAGCATTGGTTGGATGTGTTGGTGTGGGTGATAATGGCCTTACATATCTCAAAAAATCTTTGCAGAGACTTGATGTTTCAAAGTGTCGGAATGTTAGCTGCACTGGAATAATTTCCGTTGCAAGTGGTTCCTCAGACTTGCGTCAACTTACTCTTTCCTATTGCATACCAATTTCTGATGCTCTTCTTAAGAGCTTCCAAAACTGTGACAGATTACAAACAATCAAATTTGATGGTTGTGTCATTTCCAGCACAGCATTGGAATCAGTTGGGAAAAGCTGCAAGTCTTTGAGGGAGTTAAGCTTGAGCAAGTGTACTGGAGTCACAGATGAAGGACTGACTGCACTTGTGTCATGTTGTAGAGAGTTGAACAAGTTAGATCTCACCTGCTGCCGTGATCTAACTGATGTTGCTCTCTTGGCCATTGCAACATCATGCAGATATCTTTCATCCCTTAAGATGGAATCCAGCAGCTTGGTCACAGAAAGAAGTTTGACTATGTTAGGAGAAGGCTGTxxxxxxxxxxxxxxxxxxxxxxxxxxxGATTGTAGCACAAACAATACAGGATTGAAATCCCTATCTAAATGTTCGGAATTGGTCATGTTGAAACTAGGATTCTGCCCAAATATATCCAATGAAGGGATTGCCCATATAGGGGCACGTTGCTCATATCTGCAAGAACTTGATTTGTACAGATCTGTAGGAGTTGGAGATGTTGGATTAGCAGCAATTGCCAATGGTTGCCCAAAGTTAAAGAGTATTAATATTTCCTACTGCATAAATGTCACTGACAATGGTCTGATATCACTCGCTCAATTGCAAAAACTTCACCAGCTTGAAATTCGAGGTTGTTCCGGGATTTCCTCTGCTGGTCTTTCTGCAATTGCTTTAGGATGTAAACGCATCGTTGAGTTAGATATCAAAAGGTGCTACCGCGTGGATGATGTTGGAATATTAGCTGTAGCCAAGTCCTGCCAAAATTTGCGACAGATGAATGTCTCATACTGTTCAATCTCAGATGTTGGTTTGTTAGCACTGGCAAGTCTTAGATGCTTACAGAACATAAAGCTAGTTTATTTGAGGAATGTAACGGTCAATGGTTTCATGTATTTTCTGCTGGCTTGCAAAAGTTTGAAGAAACTTAAGCTTCTTCAATCCTTAAAGTTTAATTTACCACGAGTTCTGATTGAGATGTTGGAAGCCCATGGGTGCAATATTCGATGGATGGACAAGCCTTTTGTGGTATAAGATGCCCATCTTAACTAAGTGTTAATACTTGATTTTTTTCCGGAAAATGTAATATATATCTCAGAGGCCCCTTTAGCAGTAGTGTTTGTCCAACTCTAAACAAAGCAGTTTTGTGTAATGATGAATTTCTGTTTAAGCGTCGTGAGTCTATGAGTAATGTAGTGAGTGAATTATCTCATACAGTCCATCCTCTGAGAGATGAAATGAGTACCTAGGATATATAGGTACATTGTACATTGAAGAGTATTGTGTTTATATGTAGGCTTTTCTTTTGCCTTGCTTTTTGTGCAGTATGTTCTTTTTATTAC

Fln Alignment:

Contig10691___LRRYSKIQYLDLSLCCQITDESLGHVAGILGNHLVSINLSKLWTFTHLGLLQLIKSCQSLVEIDLSNCAEITDYGAEAIAQAHELQSLKLVKCKQITDMGLGCIAVGCSKLQTLNLRWCVGVTDLGVELVVVKCKELRNLDLSYSQITNKCLASIKHLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFMYFXXXXXXXXXXXXXXXXXXXXPRVLIEMLEAHGCNIRWMDKPFVV
D5A998_______________ISRCSELITLNLGFCLNISAEGIYHIGACCSN-LQELNLYRSVGTGDAGLEAIANGCPRLKSINISYCINVTDNSMKSISRLQKLHNLEIRGCPGISSAGLSAIALGCKRIVALDVKGCYNIDDAGILAIADSCQNLRQINVSYCPISDVGLSTLARLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFASALLDCESLKKLKLFEGLKFILPRSLIECLEARGCSIRWMDKPFVI

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
1277	25	75			0.996473
1278		75		25	0.996473
1279	75		25		0.996473
1280	75		25		0.996473
1281	75		25		0.996473
1317	33			66	0.997452
1320		66		33	0.997452
1390		25	75		0.996473
1391	75	25			0.996473
1394			25	75	0.996473
1395		75	25		0.996473
1398		75	25		0.996473
1400	25		75		0.996473
1403		25	75		0.996473
1404	25		75		0.996473
1489	50		50		1.0
1535	66		33		1.0
1541		33	66		1.0
1544		66	33		1.0
1545	66		33		1.0
1546	66	33			1.0
1548		66	33		1.0
1552		16	66		0.988813
1553	66	16		16	0.988813
1554		16		83	0.994512
1555	16		66		0.988813
1556		16		83	0.994512
1557	16			83	0.994512
1672	50	33			1.0
1673	66		33		1.0
1674	66			33	1.0
1676			33	66	1.0
1678	66		33		1.0
1680		33	66		1.0
1685			40	60	1.0
1686			40	60	1.0
1688	60			40	1.0
1689	60		40		1.0
1692	40	60			1.0
1693		40		60	1.0
1695	60	20			0.99255
1696	80	20			0.995493
1739	75		25		0.996473
1920		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain