SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10682

Length: 2058 nt

UniGene Fasta

>sp_v3.0_unigene10682
TATCTGCTGCCTAGAGGAGGTTGCCCTTGTCTGGAAGCTGTAGGTTCTGTCATTGAGTGTGATAATAGGGTTGCAATTGAAAGTCAATCTGACCATCAAAGAGAGTATCAAGAAGATGAACAATCTGATCTTCAAGGAAGGGAAGCCAAATATAACGATGAAATACCTGATCATGATGCCAATCATGTTGAAGTATCTGAGCAGAAAGCTGATTCACCATCCTCTACCAAACGCAGAGTAATTGGCCCAGCCATGCCCTCTGCAGAGATGTTGGAAGCTGCTGCTAAACTGACGGAGGCAGAAGCTGCCTTGAGGGATGCTGAGAAGGAATTAGAGAATGATGTGCTGATAGGACCCCCACCACCAGCTGCTGTGGTTGAAGCAGAATCAGCAAATGATGCAGAGCGCTTTGAAGAGGTGACAAGGATTATTCCTCTGAATGCAAATAATCCATATGATGTGTTGGGCTTAAATAGAGGTGCATCAGCTGAGAGCACAAAGAAAAGGTATTGGAAACTGTCTCTTTTAGTACATCCTGATAAATGTTCTCATCCTCAAGCACACCAAGCTTTTACAATATTGAACCAAGCTTTCAAAGATTTACAAGACCCAATAAAACGAGCTGCGATTGACGATAAGATAATAATAAAAGAAGCAAAGGAAGAATTTGAGGCTGACTTGAAGGCACGTCGTGAAGCTGCACAGTGGAGACGTATACGAGGTGAGGCTATATCAGGTGATGATGAGTTGCTAGCTGAAGTTAAACTGTCACCCAAACGAGATGAATGGATGACAACGCTCCCACCTGAAAGAAAGCCTGGCCCAAGTATGCATTCAACATTTTTTAGCAAGTCTGAGAAACCTGAGCGAGGGGATACAAGTACTTGGACTGACACACCATTGGAAAAAGCTCATAAAGCAAAGCAGCATTATTTGCAGGCATACAATCAAGCAGCTCTGACTGCATTAGATGAGGATATTGGGTCCCTTGAAAAGGAACATTCTTCCGCTACAGCAGACCTGATGGATAAATATAACAAGTCTAAGCGTTCTATGTCTCTTGTTGAGAAGCATAAACATGAGCAGAAGAAAAAGTCAAAAAAAGTGGAACAGTCAGAGAAGCAGCAAGAAGAAGAATGGTCAGGAAAGCATCCATGGAAGCCTTGGGACCGAGAGACTGATTTAACAGCTGGGCGGAAGTCTGTGAATTTTGATGCTAATAATTTCACGAAAGGGTTAACTTCAAGATTTTCTTCTGGAAGTGTAGAGAGGAATTTCTTGTAAGTTTAGTCTCTATTTTCATCAAGTATCCGTTCAATTCCTTTGTTCATTATGTGGCTTGTACGTTTTTTCTTCAGCTGTTTCTCTGGATTCTGCCATAGCTGAATTGAACAGACACTCAAGTCACGCAGCAAGTTTATTGATCAGGATGGCTGATTTCTTTGTTTTATATGGAAGAAGAGGAGTATGTGCGGTATTATCTAGAGTAATATTGGGTATCAGATGTCGATCGAAAAATATGGTGGGTTACCAACTGTCAAATAGAGTATAGCGTTCTAGTCACTTTCTAAAACTTAAACGATGAAAGGCGGTGTTCATATTTAAGTGGAACTTGTTTAAATTCACCTTATCTTTTAGCAGATGAGTACATCAGAAACATGAAGTGACAAGGGGTTCTTTTCTCATAGCACATTGAAGTGACAAGTGTTTGAACCTTTGAAAAGGTGAACGAATTAATGTTTCACTTTAAGTCATTTAGATTTGCTTGTATTTTTCAGCAGTTCTATATATGAGAATGGCCGTGCTCGAGGATTATCAGGCATATCGCGAAAGTACTGTTACCAAGATTTAACTTATAACCTTGTAATTTGACGTTGCAAAGATTGTCATCTCGTAATGATAGTCATTTCGATCACACATTTATGACTGATTCAGGTTTCTCTCAGAAATTTCGAATTCCTCTTTTGCCTAATACAAAAATTTTGATTGAAAAAACGTGCATGTCGTTACATGTTTTGTTTAATGGTAAAGCAAAGTGCATACATTTGACGACAGGCC

Ace file of the UniGene sp_v3.0_unigene10682

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] dbj\|BAE98751.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE34353.1\| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]	-	-	0.0	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Sma3	DNAJ heat shock N-terminal domain-containing protein-like	-	-	1.058e-08	-

Source	Gene names
Sma3	At1g65280; GSVIVT00031820001; Os01g0521500; OsI_02219; OsI_02223; OsJ_02028; P0516D04.14; P0516D04.8; PHYPADRAFT_164923; POPTRDRAFT_574282; RCOM_0686080; T8F5.5; VITISV_004743;

Source	GOs	Term	Type	Identity
Sma3	heat shock protein binding	GO:0031072	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G65280.1	DNAJ heat shock N-terminal domain-containing protein chr1:24245501-24248521 FORWARD LENGTH=588	51%
RefSeq	Arabidopsis thaliana	NP_176707.3	DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002325992.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV01

Fln msg: No stop codon before M and M found is too far from subject M, your sequence is shorter than subject: 344 - 361

Fln protein: MPSAEMLEAAAKLTEAEAALRDAEKELENDVLIGPPPPAAVVEAESANDAERFEEVTRIIPLNANNPYDVLGLNRGASAESTKKRYWKLSLLVHPDKCSHPQAHQAFTILNQAFKDLQDPIKRAAIDDKIIIKEAKEEFEADLKARREAAQWRRIRGEAISGDDELLAEVKLSPKRDEWMTTLPPERKPGPSMHSTFFSKSEKPERGDTSTWTDTPLEKAHKAKQHYLQAYNQAALTALDEDIGSLEKEHSSATADLMDKYNKSKRSMSLVEKHKHEQKKKSKKVEQSEKQQEEEWSGKHPWKPWDRETDLTAGRKSVNFDANNFTKGLTSRFSSGSVERNFL*

Protein Length: 345

Fln nts: TATCTGCTGCCTAGAGGAGGTTGCCCTTGTCTGGAAGCTGTAGGTTCTGTCATTGAGTGTGATAATAGGGTTGCAATTGAAAGTCAATCTGACCATCAAAGAGAGTATCAAGAAGATGAACAATCTGATCTTCAAGGAAGGGAAGCCAAATATAACGATGAAATACCTGATCATGATGCCAATCATGTTGAAGTATCTGAGCAGAAAGCTGATTCACCATCCTCTACCAAACGCAGAGTAATTGGCCCAGCCATGCCCTCTGCAGAGATGTTGGAAGCTGCTGCTAAACTGACGGAGGCAGAAGCTGCCTTGAGGGATGCTGAGAAGGAATTAGAGAATGATGTGCTGATAGGACCCCCACCACCAGCTGCTGTGGTTGAAGCAGAATCAGCAAATGATGCAGAGCGCTTTGAAGAGGTGACAAGGATTATTCCTCTGAATGCAAATAATCCATATGATGTGTTGGGCTTAAATAGAGGTGCATCAGCTGAGAGCACAAAGAAAAGGTATTGGAAACTGTCTCTTTTAGTACATCCTGATAAATGTTCTCATCCTCAAGCACACCAAGCTTTTACAATATTGAACCAAGCTTTCAAAGATTTACAAGACCCAATAAAACGAGCTGCGATTGACGATAAGATAATAATAAAAGAAGCAAAGGAAGAATTTGAGGCTGACTTGAAGGCACGTCGTGAAGCTGCACAGTGGAGACGTATACGAGGTGAGGCTATATCAGGTGATGATGAGTTGCTAGCTGAAGTTAAACTGTCACCCAAACGAGATGAATGGATGACAACGCTCCCACCTGAAAGAAAGCCTGGCCCAAGTATGCATTCAACATTTTTTAGCAAGTCTGAGAAACCTGAGCGAGGGGATACAAGTACTTGGACTGACACACCATTGGAAAAAGCTCATAAAGCAAAGCAGCATTATTTGCAGGCATACAATCAAGCAGCTCTGACTGCATTAGATGAGGATATTGGGTCCCTTGAAAAGGAACATTCTTCCGCTACAGCAGACCTGATGGATAAATATAACAAGTCTAAGCGTTCTATGTCTCTTGTTGAGAAGCATAAACATGAGCAGAAGAAAAAGTCAAAAAAAGTGGAACAGTCAGAGAAGCAGCAAGAAGAAGAATGGTCAGGAAAGCATCCATGGAAGCCTTGGGACCGAGAGACTGATTTAACAGCTGGGCGGAAGTCTGTGAATTTTGATGCTAATAATTTCACGAAAGGGTTAACTTCAAGATTTTCTTCTGGAAGTGTAGAGAGGAATTTCTTGTAA___GTTTAGTCTCTATTTTCATCAAGTATCCGTTCAATTCCTTTGTTCATTATGTGGCTTGTACGTTTTTTCTTCAGCTGTTTCTCTGGATTCTGCCATAGCTGAATTGAACAGACACTCAAGTCACGCAGCAAGTTTATTGATCAGGATGGCTGATTTCTTTGTTTTATATGGAAGAAGAGGAGTATGTGCGGTATTATCTAGAGTAATATTGGGTATCAGATGTCGATCGAAAAATATGGTGGGTTACCAACTGTCAAATAGAGTATAGCGTTCTAGTCACTTTCTAAAACTTAAACGATGAAAGGCGGTGTTCATATTTAAGTGGAACTTGTTTAAATTCACCTTATCTTTTAGCAGATGAGTACATCAGAAACATGAAGTGACAAGGGGTTCTTTTCTCATAGCACATTGAAGTGACAAGTGTTTGAACCTTTGAAAAGGTGAACGAATTAATGTTTCACTTTAAGTCATTTAGATTTGCTTGTATTTTTCAGCAGTTCTATATATGAGAATGGCCGTGCTCGAGGATTATCAGGCATATCGCGAAAGTACTGTTACCAAGATTTAACTTATAACCTTGTAATTTGACGTTGCAAAGATTGTCATCTCGTAATGATAGTCATTTCGATCACACATTTATGACTGATTCAGGTTTCTCTCAGAAATTTCGAATTCCTCTTTTGCCTAATACAAAAATTTTGATTGAAAAAACGTGCATGTCGTTACATGTTTTGTTTAATGGTAAAGCAAAGTGCATACATTTGACGACAGGCC

Fln Alignment:

Contig10682___EVTRIIPLNANNPYDVLGLNRGASAESTKKRYWKLSLLVHPDKCSHPQAHQAFTILNQAFKDL
A9NV01_______________EIVRLIKRNKDY-YVILGLEKNCSVEDVRKAYRKLSLRVHPDKNKAPGSEEAFKAVSKAFQCL

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
184	33	66			0.997452
203	66		33		0.997452
690		60		40	1.0
911	83		16		0.994512
912	16		83		0.994512
1990		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain