SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10658

Length: 2003 nt

UniGene Fasta

>sp_v3.0_unigene10658
ATGGGGGAAGAAGTGGTTTTGTGGTTCACGTGTGTGCGGCCATCCTTCAATATCTCTTCAGCATTTCGCATATTTTTTAGCAAGATATTCTCATCTCATCCTGAATTTTGTATCTGTGTCTTTACGCGATTCGAAAGCGGGATCTCTTGAGTTTCGAGTTCGGTTATTCTCGGAAGGCAATTCATATACATAGTTTGTGAAGGCAGGGAGGGGATTCAATTTGCTGCAGCTGTGGAGGAAATCTGGATGATAACATCGTGGGGGTTGCTGGCCGAGGTCGGAAATAAGACCTTTACAGGAAAGCCAAGGACTGTCAAGTTGTGGCAACACGGCTATTAAACGCATTTTGCGGTTTCATCTCTATGACAGCAGAAGAATTCTGCGGAGCAGGAACGCTTTTGGTGCACTAGAGGGAACTCCGTCACCGCACGGAGGGAGAGGAGCCCTGCCTTCGGAAGGCGGCAGCCCTTCTGATCTCCTCTTTCTGGCAGGAGGCGGCCGTGACCGAGCCCTTTGCTGCCTCGCCCCATCCATTTCTCCTGAGCAAAGGAGGAATAATTTGGGAGAGGTAGAGGTCGTTTAGCTTAATTTAGGCGTCAATTAGTCGCTTATTTTAACTACCACCATGTTGACCATAAAGAGGTGCCCTACTATTCTATCTAACTACCAGGAGGGCTCTAAAGGGCTTGGATGCGGCCGCAACTGTTTAGGCCAATGCTGTGTTCCAGGCTCTAAGTTGCCTCTGTATACCTTCAAGAGAAGGTATACTATTTCTGGAGAGAAAGATGCAGATAAAGATGCTGAGGTGGCACATATCCCTTTCCTCGACTCTGTGCTTCTTGGCGAGTGGGAGGAAAGGATGCAGAGGGGTCTGTTCCGGTATGATGTCACTACTTGTGAAACCAAGGTCATCCCTGGCAATTATGGTTTCATTGCTCAGCTGAATGAAGGGCGCCATCTTAAGAAACGTCCGACTGAATTTCGAGTGGACAAGGTGTTGCAGGACTTTGATCCCAGTAAATTCAATTTCACCAAAGTAGGCCAGGAAGAGGTGCTCTTTCGTTTTGAAGAAAGCGAGGAAAACAAAGTTCAGTACTTGGAAAAGGCCCCTGTATTGGACAGTCCAAACGTGATTGCCATCAATGTGAGTCCAATTGAATATGGGCACGTGCTTCTCGTGCCAAGAGTATTGGACTGCTTGCCCCAACGCATTGACCATGATAGCTTATTGTTAGCAATGCATTTGGCTGCTGAGGCTGGCAACCCATATTTTCGTCTTGGATACAATAGCCTAGGAGCATTTGCAACTATAAACCATTTGCACTTCCAGGCTTATTATTTGGCCCTCCCTTTTCCTGTTGAAAAAGCACCTACAAAAAGAGCACCATGGAAGTCTGAGAAAGGTGGGATCAAGATATTTGAACTCTGTAACTATCCTGTGAGAGGCATTGTTTTTGAAGGGGGTAATACTTTAGACAACCTCTCCAATGCTGTTGGCAATGCATGCATCTGCCTTCAAGATAACAACATACCATACAATGTGCTCATTGCAGATTGTGGCAAAAGGGTTTTTCTGTTTCCTCAGTGCTATGCAGAAAAACAAGCTTTGGGAGAAGTGGACCAAGAGATACTAGACACACAAGTAAATCCTGCTGTGTGGGAAATTAGTGGACACATTGTTTTGAAGAGGAAGCAGGACTTTGACAGGGCTTCTGAGGACTATGCATGTAAATTACTCGCTGAAGTCTCTTTGTCAGAGGAAAGATTTGAAGAGGTTAAAGATTATATTTTGGAAGCAGTAGCTACTGGGGAAGTGCAAACGAAAGAAGAGGAGAGAGCTGATATTGTGGAAGATGAGGTTCCTGTTTACGATTCCTTGAAGATTAACCATAATACTCCTATGCATATGAATGAAGGACACCCTATCTTCCCATGACTGAACTATTTACTACTGGTTTTCAAAATTATCATATGAGCAGTATCTATCTATATGCTACGACATT

Ace file of the UniGene sp_v3.0_unigene10658

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	VTC2-like protein n=2 Tax=Actinidia RepID=A4ZRE3_ACTCH	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G26850.1	" VTC2 mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltra	67%
RefSeq	Arabidopsis thaliana	NP_567759.1	GDP-L-galactose phosphorylase [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002316755.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL93

Fln msg:

Fln protein: MLTIKRCPTILSNYQEGSKGLGCGRNCLGQCCVPGSKLPLYTFKRRYTISGEKDADKDAEVAHIPFLDSVLLGEWEERMQRGLFRYDVTTCETKVIPGNYGFIAQLNEGRHLKKRPTEFRVDKVLQDFDPSKFNFTKVGQEEVLFRFEESEENKVQYLEKAPVLDSPNVIAINVSPIEYGHVLLVPRVLDCLPQRIDHDSLLLAMHLAAEAGNPYFRLGYNSLGAFATINHLHFQAYYLALPFPVEKAPTKRAPWKSEKGGIKIFELCNYPVRGIVFEGGNTLDNLSNAVGNACICLQDNNIPYNVLIADCGKRVFLFPQCYAEKQALGEVDQEILDTQVNPAVWEISGHIVLKRKQDFDRASEDYACKLLAEVSLSEERFEEVKDYILEAVATGEVQTKEEERADIVEDEVPVYDSLKINHNTPMHMNEGHPIFP*

Protein Length: 438

Fln nts: ATGGGGGAAGAAGTGGTTTTGTGGTTCACGTGTGTGCGGCCATCCTTCAATATCTCTTCAGCATTTCGCATATTTTTTAGCAAGATATTCTCATCTCATCCTGAATTTTGTATCTGTGTCTTTACGCGATTCGAAAGCGGGATCTCTTGAGTTTCGAGTTCGGTTATTCTCGGAAGGCAATTCATATACATAGTTTGTGAAGGCAGGGAGGGGATTCAATTTGCTGCAGCTGTGGAGGAAATCTGGATGATAACATCGTGGGGGTTGCTGGCCGAGGTCGGAAATAAGACCTTTACAGGAAAGCCAAGGACTGTCAAGTTGTGGCAACACGGCTATTAAACGCATTTTGCGGTTTCATCTCTATGACAGCAGAAGAATTCTGCGGAGCAGGAACGCTTTTGGTGCACTAGAGGGAACTCCGTCACCGCACGGAGGGAGAGGAGCCCTGCCTTCGGAAGGCGGCAGCCCTTCTGATCTCCTCTTTCTGGCAGGAGGCGGCCGTGACCGAGCCCTTTGCTGCCTCGCCCCATCCATTTCTCCTGAGCAAAGGAGGAATAATTTGGGAGAGGTAGAGGTCGTTTAGCTTAATTTAGGCGTCAATTAGTCGCTTATTTTAACTACCACC_-_ATGTTGACCATAAAGAGGTGCCCTACTATTCTATCTAACTACCAGGAGGGCTCTAAAGGGCTTGGATGCGGCCGCAACTGTTTAGGCCAATGCTGTGTTCCAGGCTCTAAGTTGCCTCTGTATACCTTCAAGAGAAGGTATACTATTTCTGGAGAGAAAGATGCAGATAAAGATGCTGAGGTGGCACATATCCCTTTCCTCGACTCTGTGCTTCTTGGCGAGTGGGAGGAAAGGATGCAGAGGGGTCTGTTCCGGTATGATGTCACTACTTGTGAAACCAAGGTCATCCCTGGCAATTATGGTTTCATTGCTCAGCTGAATGAAGGGCGCCATCTTAAGAAACGTCCGACTGAATTTCGAGTGGACAAGGTGTTGCAGGACTTTGATCCCAGTAAATTCAATTTCACCAAAGTAGGCCAGGAAGAGGTGCTCTTTCGTTTTGAAGAAAGCGAGGAAAACAAAGTTCAGTACTTGGAAAAGGCCCCTGTATTGGACAGTCCAAACGTGATTGCCATCAATGTGAGTCCAATTGAATATGGGCACGTGCTTCTCGTGCCAAGAGTATTGGACTGCTTGCCCCAACGCATTGACCATGATAGCTTATTGTTAGCAATGCATTTGGCTGCTGAGGCTGGCAACCCATATTTTCGTCTTGGATACAATAGCCTAGGAGCATTTGCAACTATAAACCATTTGCACTTCCAGGCTTATTATTTGGCCCTCCCTTTTCCTGTTGAAAAAGCACCTACAAAAAGAGCACCATGGAAGTCTGAGAAAGGTGGGATCAAGATATTTGAACTCTGTAACTATCCTGTGAGAGGCATTGTTTTTGAAGGGGGTAATACTTTAGACAACCTCTCCAATGCTGTTGGCAATGCATGCATCTGCCTTCAAGATAACAACATACCATACAATGTGCTCATTGCAGATTGTGGCAAAAGGGTTTTTCTGTTTCCTCAGTGCTATGCAGAAAAACAAGCTTTGGGAGAAGTGGACCAAGAGATACTAGACACACAAGTAAATCCTGCTGTGTGGGAAATTAGTGGACACATTGTTTTGAAGAGGAAGCAGGACTTTGACAGGGCTTCTGAGGACTATGCATGTAAATTACTCGCTGAAGTCTCTTTGTCAGAGGAAAGATTTGAAGAGGTTAAAGATTATATTTTGGAAGCAGTAGCTACTGGGGAAGTGCAAACGAAAGAAGAGGAGAGAGCTGATATTGTGGAAGATGAGGTTCCTGTTTACGATTCCTTGAAGATTAACCATAATACTCCTATGCATATGAATGAAGGACACCCTATCTTCCCATGA___CTGAACTATTTACTACTGGTTTTCAAAATTATCATATGAGCAGTATCTATCTATATGCTACGACATT

Fln Alignment:

Contig10658___KRCPTILSNYQEGSKGLGCGRNCLGQCCVPGSKLPLYTFKRRYTISGEKDADKDAEVAHIPFLDSVLLGEWEERMQRGLFRYDVTTCETKVIPGNYGFIAQLNEGRHLKKRPTEFRVDKVLQDFDPSKFNFTKVGQXXXXXXXXXXXXNKVQYLEKAPVLDSPNVIAINVSPIEYGHVLLVPRVLDCLPQRIDHDSLLLAMHLAAEAGNPYFRLGYNSLGAFATINHLHFQAYYLALPFPVEKAPTKRAPWKSEKGGIKIFELCNYPVRGIVFEGGNTLDNLSNAVGNACICLQDNNIPYNVLIADCGKRVFLFPQCYAEKQALGEVDQEILDTQVNPAVWEISGHIVLKRKQDFDRASEDYACKLLAEVSLSEERFEEVKDYILEAVATGEVQTKEEERADIVEDEVPVYDSLKINHNTPMHMNEGHPIFP
B8LL93_______________KRCPTILSNYQEGSEGLGCGRNCLGQCCVPGSKLPLYTFKRRHTITGEKYADKDAEVANIPFLDSVLLGEWEERMQRGLFRYDVTTCETKVIPGNYGFIAQLNEGRHLKKRPTEFRVDKVLQDFDPSKFNFTKVGQEEVLFRFEESAENKVQYLEKALVLDSPNVIAINVSPIDYGHVLLVPRVLDCLPQRIDHDSLLLAMHLAAEAGNTSFRLGYNSLGAFATINHLHFQAYYLALPFPVEKTPTKRAPWKSEKGGVKISELCNYPVRGLVFEGCNTLENLSNAVGSACICLQDNNIPYNVLIADCGKRVFLFPQCYAEKQALGEVDQEILDTQVNPAVWEISGHIVLKRKQDFDRASEDYACKLLAEVSLSEERFEEVKDYILEAAATGEMQTEEEERAVVVEDEVPVYDSLKNNHNAPMHITEGRPILP

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
741		85		14	0.993533
751	22	77			0.999999
752	10	70		20	0.999998
753	10		20	70	0.999998
755		70	10		0.999998
756	90			10	0.90298
911		88		11	0.923564
912	88		11		0.923564
913			11	88	0.923564
914	11	88			0.923564
915	11	88			0.923564
916		88		11	0.923564
918	11		88		0.923564
1216	85			14	0.993533
1372	28	71			1.0
1462	25		75		0.996473
1463		25	25		0.995533
1464	25		75		0.996473
1465			75	25	0.996473
1466			75	25	0.996473
1582	11	88			0.923564
1583	11	88			0.923564
1585		88	11		0.923564
1596	88		11		0.923564
1751	14	85			0.993533
1752	14			85	0.993533
1753		14		85	0.993533
1755			85	14	0.993533
1757	14	85			0.993533
1760	85			14	0.993533
1900		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain