SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10475

Length: 2106 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene10475
TTTGCAGCCATCAACTTGTGGGAAATCATCATTTCATGTATTGATGGTAGCATATTTGTAAGAGTCATTGTGTCTGATATCTTTCAGTCTGTCATGGCTGCACCACAAGTATTTCTACATCCAAAGCTTCCTTTGGATTATTTTTATGCCAGATATTTTGGTAAGAAAAGTTTTCCTCTCCCTGGGTCTGGGTCCATGTCCAACTCTTTGCTGATAAAAATGGGGAAAGGTAAGAAATTGGGAACAAGCAATCAATCCCATCGCCAAACAGTAGCTTTCAACGAGTTATCTCTGATCACTGCAAAACATGAAATGTGTTCTTCGGAAGCTACTTTGATCTCAGATGACAGAAGATCAAGCGGAGTGGTGGAGGCCACAAGTACCAGTCTGAAAAATATTGAGAGTACTGTTGCAGGAAGCATTTCAGTTATGGCTCCATGCAAGGGTCTTGGAATTGTAGATTTTATGAAGGATAAGAACTTTCTCATCACAGGTGCCACTGGTTTTGTTGGAAAAGTGCTGATAGAGAAGATATTAAGGATGCAGCCAGATATAGGAAAGCTGTTTTTGATCATTAGGGCTAACGATTCTGCATCTGCATTGAAGAGATTGAAGGATGAAGTTATGAACGTGGAGTTATTCAAATGTTTACGTGAAATCCATGGTGATGAATTCGAAAAATTCATGTTGAAAAGACTGGTTCCTGTAGCTGGTGACATGACGAAACACAACCTTGGAATAGAAGAGGAAATGGCCAATGTGCTGACGGAAGAAGTAGATATCATTGTCAGCTCTGCAGCCACTACAACATTTGATGAAAGGTATGACGTGGCTCTGCAAACCAACACAACTGGAGTTGATAGCCTTTTGCAGTTCGGCAAATGCTGTGAAAATCTCCAACTTTTCATCCATATATCCACAGCATATGTCCACGGGCAGAGACAAGGTCGAGCACTCGAGAAGCCCCTTCAGATGAAGCGCGGTATAGCAAATCAGAAAGCAGAATTTATTCCACCTCTGAACTTCCAAGCTGAATTTCATTTAGCAAACAAAGTTCGCGAGGGTTTGGAGATTGAATATTCAAATTTCCAGAGATGCAATAAGGGGCTAGTAGATTCTCAAAGGAAAATCACTCAGAGGATGCAAAATTTGGGCATGGAAAGGGCAAGAGCATATGGATGGCAGGATACGTACACATTTACGAAAGCAATGGCCGAGATGCTTATGGTCAGTGGCAGGGAAAATTTACCTGTAGTCATTGTTCGTCCTAGTGTTATTGAAAGCACATACAGTCAGCCTTTTCCTGGATGGATAGAAGGCCATCGAATGTTGGATCCCATCATTACACTCTATGGAAAAGGTCAGCTGTCTTGCTGGTTGGCCGATTCAGATACGCTGCTCGATCTGGTACCTGTAGACATGGTTGTGAATGCAACTTTAGCTGCAATAGCAAAGCATGCCGGAAAACCAGGGCTAAAGGTTTATCAGGTGGCTTCTTCAGTTGCAAATCCTATAAGAGTTGGAAAAGTTCTTAACTTAATATTTGAGCATTTTAAATGTAATCCATACATTGACAACAAAGGGAAACCAGTAAGATTGATGAAGGCAATAACATGCCTGCATACAATGGAGGACTTCTGTGGGCAAGACTGGGACACCAGTCCAAGCAGTAAACACAATTCTGTGATATCAATAGACCAATTGAAGTACATGGCCAAGATCTACGAGCCATATGGATTCTACAAAGGAAGGTTCGATAACTCAAACTTGGAGAAGTTGTTCCAAGAGCTTTCAGAAGAAGAACAAGAGGTTTTTGGATTTGATGTTAAGAATATCGAGTGGAAAAACTATATTGGAAATATTCACGTTAGGGGAGTTCGCCGACATGTCATGAAAGGACGTGGTAGTGGAAAATCCATGATAAACATCTCCTCTGATTAGTTCTCATAAATTATGTAAATTTGCATGGTAACGTCCTCATTTTCTTCATTTTTCAGGTTGAAGAAATCATTATGATTTTTATTTCGGCAAACTGAACTCTAAATAGACTTTGGGAAGGATTGTATATATCATTCATAAAGAGCAAAGCTATAAATTGCTTGTTTT

Ace file of the UniGene sp_v3.0_unigene10475 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	male sterility 2 [Brassica rapa subsp. chinensis]	-	-	0.0	47%
FL-Next	sp=Fatty acyl-CoA reductase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	47%
Sma3	Acyl CoA reductase-protein	-	-	1.612e-08	-

Source	Gene names
Sma3	AT3G44540; At3g11980; At3g44540; At3g44550; At3g44560; At3g56700; At5g22500; F14L2_100; F14L2_110; F14L2_90; GSVIVT00001317001; GSVIVT00003714001; GSVIVT00005678001; GSVIVT00011407001; GSVIVT00025442001; LOC_Os03g07140; MS2; MS2-F; OSIGBa0147J02.3; OSJNBa

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	fatty-acyl-CoA reductase (alcohol-forming) activity	GO:0080019	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Male sterility	IPR004262	-	-
Sma3	Male sterility, NAD-binding	IPR013120	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G11980.1	MS2, FAR2 Jojoba acyl CoA reductase-related male sterility protein chr3:3814484-3816927 FORWARD LENGTH=616	47%
RefSeq	Arabidopsis thaliana	NP_187805.1	fatty acyl-CoA reductase 2 [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002323348.1	predicted protein [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q08891

Fln msg:

Fln protein: MAAPQVFLHPKLPLDYFYARYFGKKSFPLPGSGSMSNSLLIKMGKGKKLGTSNQSHRQTVAFNELSLITAKHEMCSSEATLISDDRRSSGVVEATSTSLKNIESTVAGSISVMAPCKGLGIVDFMKDKNFLITGATGFVGKVLIEKILRMQPDIGKLFLIIRANDSASALKRLKDEVMNVELFKCLREIHGDEFEKFMLKRLVPVAGDMTKHNLGIEEEMANVLTEEVDIIVSSAATTTFDERYDVALQTNTTGVDSLLQFGKCCENLQLFIHISTAYVHGQRQGRALEKPLQMKRGIANQKAEFIPPLNFQAEFHLANKVREGLEIEYSNFQRCNKGLVDSQRKITQRMQNLGMERARAYGWQDTYTFTKAMAEMLMVSGRENLPVVIVRPSVIESTYSQPFPGWIEGHRMLDPIITLYGKGQLSCWLADSDTLLDLVPVDMVVNATLAAIAKHAGKPGLKVYQVASSVANPIRVGKVLNLIFEHFKCNPYIDNKGKPVRLMKAITCLHTMEDFCGQDWDTSPSSKHNSVISIDQLKYMAKIYEPYGFYKGRFDNSNLEKLFQELSEEEQEVFGFDVKNIEWKNYIGNIHVRGVRRHVMKGRGSGKSMINISSD*

Protein Length: 617

Fln nts: TTTGCAGCCATCAACTTGTGGGAAATCATCATTTCATGTATTGATGGTAGCATATTTGTAAGAGTCATTGTGTCTGATATCTTTCAGTCTGTC_-_ATGGCTGCACCACAAGTATTTCTACATCCAAAGCTTCCTTTGGATTATTTTTATGCCAGATATTTTGGTAAGAAAAGTTTTCCTCTCCCTGGGTCTGGGTCCATGTCCAACTCTTTGCTGATAAAAATGGGGAAAGGTAAGAAATTGGGAACAAGCAATCAATCCCATCGCCAAACAGTAGCTTTCAACGAGTTATCTCTGATCACTGCAAAACATGAAATGTGTTCTTCGGAAGCTACTTTGATCTCAGATGACAGAAGATCAAGCGGAGTGGTGGAGGCCACAAGTACCAGTCTGAAAAATATTGAGAGTACTGTTGCAGGAAGCATTTCAGTTATGGCTCCATGCAAGGGTCTTGGAATTGTAGATTTTATGAAGGATAAGAACTTTCTCATCACAGGTGCCACTGGTTTTGTTGGAAAAGTGCTGATAGAGAAGATATTAAGGATGCAGCCAGATATAGGAAAGCTGTTTTTGATCATTAGGGCTAACGATTCTGCATCTGCATTGAAGAGATTGAAGGATGAAGTTATGAACGTGGAGTTATTCAAATGTTTACGTGAAATCCATGGTGATGAATTCGAAAAATTCATGTTGAAAAGACTGGTTCCTGTAGCTGGTGACATGACGAAACACAACCTTGGAATAGAAGAGGAAATGGCCAATGTGCTGACGGAAGAAGTAGATATCATTGTCAGCTCTGCAGCCACTACAACATTTGATGAAAGGTATGACGTGGCTCTGCAAACCAACACAACTGGAGTTGATAGCCTTTTGCAGTTCGGCAAATGCTGTGAAAATCTCCAACTTTTCATCCATATATCCACAGCATATGTCCACGGGCAGAGACAAGGTCGAGCACTCGAGAAGCCCCTTCAGATGAAGCGCGGTATAGCAAATCAGAAAGCAGAATTTATTCCACCTCTGAACTTCCAAGCTGAATTTCATTTAGCAAACAAAGTTCGCGAGGGTTTGGAGATTGAATATTCAAATTTCCAGAGATGCAATAAGGGGCTAGTAGATTCTCAAAGGAAAATCACTCAGAGGATGCAAAATTTGGGCATGGAAAGGGCAAGAGCATATGGATGGCAGGATACGTACACATTTACGAAAGCAATGGCCGAGATGCTTATGGTCAGTGGCAGGGAAAATTTACCTGTAGTCATTGTTCGTCCTAGTGTTATTGAAAGCACATACAGTCAGCCTTTTCCTGGATGGATAGAAGGCCATCGAATGTTGGATCCCATCATTACACTCTATGGAAAAGGTCAGCTGTCTTGCTGGTTGGCCGATTCAGATACGCTGCTCGATCTGGTACCTGTAGACATGGTTGTGAATGCAACTTTAGCTGCAATAGCAAAGCATGCCGGAAAACCAGGGCTAAAGGTTTATCAGGTGGCTTCTTCAGTTGCAAATCCTATAAGAGTTGGAAAAGTTCTTAACTTAATATTTGAGCATTTTAAATGTAATCCATACATTGACAACAAAGGGAAACCAGTAAGATTGATGAAGGCAATAACATGCCTGCATACAATGGAGGACTTCTGTGGGCAAGACTGGGACACCAGTCCAAGCAGTAAACACAATTCTGTGATATCAATAGACCAATTGAAGTACATGGCCAAGATCTACGAGCCATATGGATTCTACAAAGGAAGGTTCGATAACTCAAACTTGGAGAAGTTGTTCCAAGAGCTTTCAGAAGAAGAACAAGAGGTTTTTGGATTTGATGTTAAGAATATCGAGTGGAAAAACTATATTGGAAATATTCACGTTAGGGGAGTTCGCCGACATGTCATGAAAGGACGTGGTAGTGGAAAATCCATGATAAACATCTCCTCTGATTAG___TTCTCATAAATTATGTAAATTTGCATGGTAACGTCCTCATTTTCTTCATTTTTCAGGTTGAAGAAATCATTATGATTTTTATTTCGGCAAACTGAACTCTAAATAGACTTTGGGAAGGATTGTATATATCATTCATAAAGAGCAAAGCTATAAATTGCTTGTTTT

Fln Alignment:

Contig10475___SVMAPCKGLGIVDFMKDKNFLITGATGFVGKVLIEKILRMQPDIGKLFLIIRANDSASALKRLKDEVMNVELFKCLREIHGDEFEKFMLKRLVPVAGDMTKHNLGIEEEMANVLTEEVDIIVSSAATTTFDERYDVALQTNTTGVDSLLQFGKCCENLQLFIHISTAYVHGQRQGRALEKPLQMKRGIANQKAEFIPPLNFQAEFHLANKVREGLEIEYSNFQRCNKGLVDSQRKITQRMQNLGMERARAYGWQDTYTFTKAMAEMLMVSGRENLPVVIVRPSVIESTYSQPFPGWIEGHRMLDPIITLYGKGQLSCWLADSDTLLDLVPVDMVVNATLAAIAKHA-----GKPGLKVYQVASSVANPIRVGKVLNLIFEHFKCNPYIDNKGKP--VRLMKAITCLHTMEDFCGQDWD---------TSPSSKHNSVI------SIDQLKYMAKIYEPYGFYKGRFDNSNLEKLFQELSEEEQEVFGFDVKNIEWKNYIGNIHVRGVRRHVMKGR
Q08891_______________SMVGMKEGLGIISFLQGKKFLITGSTGFLAKVLIEKVLRMAPDVSKIYLLIKAKSKEAAIERLKNEVLDAELFNTLKETHGASYMSFMLTKLIPVTGNICDSNIGLQADSAEEIAKEVDVIINSAANTTFNERYDVALDINTRGPGNLMGFAKKCKKLKLFLQVSTAYVNGQRQGRIMEKPFSMGDCIATE--------NFLEGNRKALDVDREMKLA---LEAARKGTQNQDE--AQKMKDLGLERARSYGWQDTYVFTKAMGEMMINSTRGDVPVVIIRPSVIESTYKDPFPGWMEGNRMMDPIVLCYGKGQLTGFLVDPKGVLDVVPADMVVNATLAAIAKHGMAMSDPEPEINVYQIASSAINPLVFEDLAELLYNHYKTSPCMDSKGDPIMVRLMKLFNSVDDFSDHLWRDAQERSGLMSGMSSVDSKMMQKLKFICKKSVEQAKHLATIYEPYTFYGGRFDNSNTQRLMENMSEDEKREFGFDVGSINWTDYITNVHIPGLRRHVLKGR

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1812		16		83	0.994512
1978	50		50		1.0
2045	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain