SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10446

Length: 217 nt

UniGene Fasta

>sp_v3.0_unigene10446
GGAAGGTGGAGGGAGTGTGGATTCATCATCTGCATCATGGATTTCTCTTCACTGCTGACATCTCTGGGCACTTCATTTCTCATTTTCTTGCTGCTGGTTTTTGCCTTCACATGGCTGTCTAAGATGCAAGTGAACCGCGTGATCTATTTCCCCAATAAAATTGTCAAGGGGTTGGATGTATCGACCAAATCTCGCAATCCTTTTGCCTGGATTGTGG

Ace file of the UniGene sp_v3.0_unigene10446

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	52%

Source	Gene names
Sma3	GSVIVT00028359001; POPTRDRAFT_1069914; RCOM_1288500; VITISV_037471;

Source	GOs	Term	Type	e value	Identity
Sma3	membrane	GO:0016020	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF221	IPR003864	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9SYI4

Fln msg: Distance to subject end: 578 aas, your sequence is shorter than subject: 60 - 641

Fln protein: MDFSSLLTSLGTSFLIFLLLVFAFTWLSKMQVNRVIYFPNKIVKGLDVSTKSRNPFAWIV

Protein Length: 61

Fln nts: GGAAGGTGGAGGGAGTGTGGATTCATCATCTGCATC_-_ATGGATTTCTCTTCACTGCTGACATCTCTGGGCACTTCATTTCTCATTTTCTTGCTGCTGGTTTTTGCCTTCACATGGCTGTCTAAGATGCAAGTGAACCGCGTGATCTATTTCCCCAATAAAATTGTCAAGGGGTTGGATGTATCGACCAAATCTCGCAATCCTTTTGCCTGGATTGTGG

Fln Alignment:

Contig10446___VFAFTWLSKMQVNRVIYFPNKIVKGLDV---STKSRNPFAWI
B9SYI4_______________MFLFTWLSRRPGNAVVYYPNRILKGLEPWEGGSRTRNPFAWI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
46	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain