SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10400

Length: 2443 nt

UniGene Fasta

>sp_v3.0_unigene10400
TTTATTGGGAGGCTGGCGGGCAGTAGCTGAAGGGCCAGCTCAATATCTCTCATTTATCGTACTGGACTTTGTCCTCATTATTAGCATTGTTTTCATTTATTGTTTATTGTAATTTCCATTGCCATCGAAACCCCTGATTTCTCAGCAAATAATTGGTGGCTCGGATCTCGTCCAGCACGTTTTTTTCGTCTCTTTTTAGCTAAAATATATATACGTATTGTGGGCACAACCGGGCCTCGGACGGACTTGATCTGGAGATCTGCACCTGCGGAAACACAGGCACTCGCTTTTTACAGATCTTACAAAGATTAGACCTGTACAATGTCAGGCGGTGGCACACAACAGAGCCTGAGGAAGGCATTGGGTGCACTGAAAGATACAACGACAGTTAGTCTTGCCAAAGTGAACAGTGATTACAAGGATCTAGACATTGCTATTGTGAAGGCCACAAATCATGTTGAGCGGCCAGCAAAAGAAAAGCATATCCGAATTATTTTTGCAGCAACATCGGCTGCAAGGCCTCGGGCAGATGTGGCATATTGCATCCATGCTCTTGCAAGACGTCTTGCCAAGACTCACAACTGGGCGGTTGCGTTAAAAACCTTAATTGTTATCCATCGAGCTTTGAGAGAGGTTGACCCCACGTTTCGGGAGGAATTGATCAATTATAGTAGATCCAGAGGCCACATTCTCAATTTATCTTACTTCAAGGATGATTCAAGTCCAAATGCTTGGGACTATTCAGCGTGGGTACGTGCATATGCATTGTTCCTGGAAGAACGATTGGAATGCTACCGTGTACTGAAATATGACATTGAAACGGAGCGCTTGAGAACCAGGGAACTGGACACTCCTGAATTGCTAGAACAATTGCCAGCTTTGCAGCAATATCTTTATCGTCTAATGGGGTGTCAGCCGGAAGGGGCAGCTATATCCAATCATGTGATACAGTATGCACTCACAGCGGTTTCAAGGGAGAGCATTAAACTTTATACTGCAATTAATGATGCCACCATCAACCTTGTTGACAAGTTCTTTGAAATGCAACGCCATGATGCTATTAAGGCTCTTGAGATCTATAGGCGAGCTGGTAAACAGGCTGAAAAATTATCAGAGTTTTATGAAGTTTGCAAAGGTCTTGACCTTGGACGTGGTTTTAAATTTCCTACACTTGAACAGCCACCAGCATCATTCGTTTCTGCAATGGAAGAGTATGTTAGAGATGCCCCAAGAGCATCATCAGTCCGTAGGGAGTCGAAGACTGAGTCTGTTCCAAAGGTTTTATCTCTGGAGTACAAGAAAAAATCAGAACCCCAGGATGATGCACCACCACCACCTCCTCCTCCACCTCCAGAACCAGTTAAAGAAAGTGCTGCACCTGTAGAAACTGTGCCAACTGTGACAACTGATCTTTTGGGCTTAGATGAGATTAGTCCCGATCCTTCCTCACTCGAAGAAAAGAATGCGATGGCACTTGCTATTGTTCCTACTACGGATAATTCTTCCAATGGAACCTCAAACCGTGCTCTAGATATTCCAAATGGGGCCACTGGTTGGGAACTGGCTCTTGTCACCACTTCGAGCTCTAATTCAAGTGTGCAAGCAGAAAGTAAACTGGCTGGCGGCCTTGATAAGCTTACATTAGATAGCTTATATGAAGATGCGATGACAAGGCAGGTATCTAGCTACCATACAGGTCAAGTGGCACCAAATCCCTTTGAGGCTTCTCCAATGATGCAACCGGGACATGACCCTTTTTATGCTTCACAAAAGGTTGCTCCACCATCCGCTGTACAGATGGCTTCTATGGCTCAGCAGCAACAAGCTTTCATTGCGCAGCAACAGATGATGGGGCAGCAAGTTCCTGCCAACCCTTTCGGCAATCCATATACAGCTGCATATCCTTATGCTGCAGGGGCTCCTTATCAGGCTCAATATCCATATGGAAATGCAGGCTACATGTAGGTGTTGTCAATCAGATGATTCTTTTAGAAATAAAGGCGAAATCCGAGATGTTACAAAGGTTGCCAGTTGGATTGTTGGACAGTTCGGTATTTTTACTACCTCAACTTCGTTGTTTGTCTTATTTGTTACCTTTGTTAGTCCAGCCTAGCGTTTTTCTATATTAGATGACGCCGAGGCATAAATGGAGTTGTCATGAGTCAGTAAGAGGTACGCATTTATTTTGTGACGCACTGCGCAGTTATTGCTGCCAAATTTGTTGTTACAGGGGTGTATCATATTTCATGTAGTAACTAGTTTATTCAGATTCAATTTGTCTATTAGATGAGATTTTCATTGAAATTTTTGGGGACCTCCAGTTCGGATATTAATTGAATTGATTCTTGAATGATGATGGCAAGCCACTTTTAGGAGCTGATGGAACCTATGGGCAGAAATATATCTACGAAATTGCATGCAATATTTCCACTCTCAGAATTCT

Ace file of the UniGene sp_v3.0_unigene10400

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative clathrin assembly protein [Arabidopsis thaliana] sp\|Q9LHS0.1\|CAP10_ARATH RecName: Full=Putative clathrin assembly protein At5g35200 dbj\|BAA98205.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL91173.1\| unknown protein [Arabidopsis thalian	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	ANTH	IPR011417	-	-
Sma3	Clathrin adaptor, phosphoinositide-binding, GAT-like	IPR014712	-	-
Sma3	ENTH/VHS	IPR008942	-	-
Sma3	Epsin-like, N-terminal	IPR013809	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G35200.1	ENTH/ANTH/VHS superfamily protein chr5:13462463-13465581 REVERSE LENGTH=544	61%
RefSeq	Arabidopsis thaliana	NP_198370.1	putative clathrin assembly protein [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002308057.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKD7

Fln msg:

Fln protein: MSGGGTQQSLRKALGALKDTTTVSLAKVNSDYKDLDIAIVKATNHVERPAKEKHIRIIFAATSAARPRADVAYCIHALARRLAKTHNWAVALKTLIVIHRALREVDPTFREELINYSRSRGHILNLSYFKDDSSPNAWDYSAWVRAYALFLEERLECYRVLKYDIETERLRTRELDTPELLEQLPALQQYLYRLMGCQPEGAAISNHVIQYALTAVSRESIKLYTAINDATINLVDKFFEMQRHDAIKALEIYRRAGKQAEKLSEFYEVCKGLDLGRGFKFPTLEQPPASFVSAMEEYVRDAPRASSVRRESKTESVPKVLSLEYKKKSEPQDDAPPPPPPPPPEPVKESAAPVETVPTVTTDLLGLDEISPDPSSLEEKNAMALAIVPTTDNSSNGTSNRALDIPNGATGWELALVTTSSSNSSVQAESKLAGGLDKLTLDSLYEDAMTRQVSSYHTGQVAPNPFEASPMMQPGHDPFYASQKVAPPSAVQMASMAQQQQAFIAQQQMMGQQVPANPFGNPYTAAYPYAAGAPYQAQYPYGNAGYM*

Protein Length: 549

Fln nts: TTTATTGGGAGGCTGGCGGGCAGTAGCTGAAGGGCCAGCTCAATATCTCTCATTTATCGTACTGGACTTTGTCCTCATTATTAGCATTGTTTTCATTTATTGTTTATTGTAATTTCCATTGCCATCGAAACCCCTGATTTCTCAGCAAATAATTGGTGGCTCGGATCTCGTCCAGCACGTTTTTTTCGTCTCTTTTTAGCTAAAATATATATACGTATTGTGGGCACAACCGGGCCTCGGACGGACTTGATCTGGAGATCTGCACCTGCGGAAACACAGGCACTCGCTTTTTACAGATCTTACAAAGATTAGACCTGTACA_-_ATGTCAGGCGGTGGCACACAACAGAGCCTGAGGAAGGCATTGGGTGCACTGAAAGATACAACGACAGTTAGTCTTGCCAAAGTGAACAGTGATTACAAGGATCTAGACATTGCTATTGTGAAGGCCACAAATCATGTTGAGCGGCCAGCAAAAGAAAAGCATATCCGAATTATTTTTGCAGCAACATCGGCTGCAAGGCCTCGGGCAGATGTGGCATATTGCATCCATGCTCTTGCAAGACGTCTTGCCAAGACTCACAACTGGGCGGTTGCGTTAAAAACCTTAATTGTTATCCATCGAGCTTTGAGAGAGGTTGACCCCACGTTTCGGGAGGAATTGATCAATTATAGTAGATCCAGAGGCCACATTCTCAATTTATCTTACTTCAAGGATGATTCAAGTCCAAATGCTTGGGACTATTCAGCGTGGGTACGTGCATATGCATTGTTCCTGGAAGAACGATTGGAATGCTACCGTGTACTGAAATATGACATTGAAACGGAGCGCTTGAGAACCAGGGAACTGGACACTCCTGAATTGCTAGAACAATTGCCAGCTTTGCAGCAATATCTTTATCGTCTAATGGGGTGTCAGCCGGAAGGGGCAGCTATATCCAATCATGTGATACAGTATGCACTCACAGCGGTTTCAAGGGAGAGCATTAAACTTTATACTGCAATTAATGATGCCACCATCAACCTTGTTGACAAGTTCTTTGAAATGCAACGCCATGATGCTATTAAGGCTCTTGAGATCTATAGGCGAGCTGGTAAACAGGCTGAAAAATTATCAGAGTTTTATGAAGTTTGCAAAGGTCTTGACCTTGGACGTGGTTTTAAATTTCCTACACTTGAACAGCCACCAGCATCATTCGTTTCTGCAATGGAAGAGTATGTTAGAGATGCCCCAAGAGCATCATCAGTCCGTAGGGAGTCGAAGACTGAGTCTGTTCCAAAGGTTTTATCTCTGGAGTACAAGAAAAAATCAGAACCCCAGGATGATGCACCACCACCACCTCCTCCTCCACCTCCAGAACCAGTTAAAGAAAGTGCTGCACCTGTAGAAACTGTGCCAACTGTGACAACTGATCTTTTGGGCTTAGATGAGATTAGTCCCGATCCTTCCTCACTCGAAGAAAAGAATGCGATGGCACTTGCTATTGTTCCTACTACGGATAATTCTTCCAATGGAACCTCAAACCGTGCTCTAGATATTCCAAATGGGGCCACTGGTTGGGAACTGGCTCTTGTCACCACTTCGAGCTCTAATTCAAGTGTGCAAGCAGAAAGTAAACTGGCTGGCGGCCTTGATAAGCTTACATTAGATAGCTTATATGAAGATGCGATGACAAGGCAGGTATCTAGCTACCATACAGGTCAAGTGGCACCAAATCCCTTTGAGGCTTCTCCAATGATGCAACCGGGACATGACCCTTTTTATGCTTCACAAAAGGTTGCTCCACCATCCGCTGTACAGATGGCTTCTATGGCTCAGCAGCAACAAGCTTTCATTGCGCAGCAACAGATGATGGGGCAGCAAGTTCCTGCCAACCCTTTCGGCAATCCATATACAGCTGCATATCCTTATGCTGCAGGGGCTCCTTATCAGGCTCAATATCCATATGGAAATGCAGGCTACATGTAG___GTGTTGTCAATCAGATGATTCTTTTAGAAATAAAGGCGAAATCCGAGATGTTACAAAGGTTGCCAGTTGGATTGTTGGACAGTTCGGTATTTTTACTACCTCAACTTCGTTGTTTGTCTTATTTGTTACCTTTGTTAGTCCAGCCTAGCGTTTTTCTATATTAGATGACGCCGAGGCATAAATGGAGTTGTCATGAGTCAGTAAGAGGTACGCATTTATTTTGTGACGCACTGCGCAGTTATTGCTGCCAAATTTGTTGTTACAGGGGTGTATCATATTTCATGTAGTAACTAGTTTATTCAGATTCAATTTGTCTATTAGATGAGATTTTCATTGAAATTTTTGGGGACCTCCAGTTCGGATATTAATTGAATTGATTCTTGAATGATGATGGCAAGCCACTTTTAGGAGCTGATGGAACCTATGGGCAGAAATATATCTACGAAATTGCATGCAATATTTCCACTCTCAGAATTCT

Fln Alignment:

Contig10400___MSGGGTQQSLRKALGALKDTTTVSLAKVNSDYKDLDIAIVKATNHVERPAKEKHIRIIFAATSAARPRADVAYCIHALARRLAKTHNWAVALKTLIVIHRALREVDPTFREELINYSRSRGHILNLSYFKDDSSPNAWDYSAWVRAYALFLEERLECYRVLKYDIETERLRTRELDTXXXXXXXXXXXXXXXRLMGCQPEGAAISNHVIQYALTAVSRESIKLYTAINDATINLVDKFFEMQRHDAIKALEIYRRAGKQAEKLSEFYEVCKGLDLGRGFKFPTLEQPPASFVSAMEEYVRDAPRASSVRRESKTESVPKVLSLEYKKKSEPQDDAXXXXXXXXXXXVKESAAXXXXXXXXXXDLLGLDEISPDPSSLEEKNAMALAIVPTTDNSSNGTSNRALDIPNGATGWELALVTTSSSNSSVQAESKLAGGLDKLTLDSLYEDAMTRQVSSYHTGQVAPNPFEASPMMQPGHDPFYASQKVAPPSAVXXXXXXXXXXXXXXXXXXXXXXVPANPFGNXXXXXXXXXXXXXXXXXXXXXNAGYM
B8LKD7_______________MSGGGTQQSLRKALGALKDTTTVSLAKVNSDYKDLDIAIVKATNHVERPAKEKHIRIIFAATSATRPRADVAYCIHALARRLAKTHNWAVALKTLIVIHRALREVDPTFREELINYSRSRGHILNLSYFKDDSSSNAWDYSAWVRSYALFLEERLECYRVLKYDIETERLRTRELDTVELLEQLPALQQYLYRLMGCQPEGAAISNHVIQYALTAVSRESIKLYTAINDATINLVDKFFEMQRHDAIKALDIYRRAGKQAEKLSEFYEVCKSLDLGRGFKFPTLEQPPASFISAMEEYVRDAPRASSARRE-LIESVPKTLALEYKKKSDPQDDAPPPPPPPPPEPVKESVAPVQTVPTVTTDLLGFDDISPDPSSLEEKNALALAIVPTTDNSSNGTSNSARDIPNGATGWELALVTTSSSNSSVQAESKLAGGFDKLTLDSLYEDAMTRQVSSYHTGQVAPNPFEASPMMQPGHDPFYASQKVAPPSAVQMASMAQQQQAFMAQQQMMGQQLPANPFGNPYTAAYPYAAGTPYQAQYPYGNAGYM

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
215		75		25	0.996473
331	11	88			0.923564
332			88	11	0.923564
334			11	88	0.923564
471		90		10	0.90298
926			88	11	0.923564
1396	88			11	0.923564
1423	77		22		0.999999
2316	41	58			1.0
2355	10			90	0.90298
2356	10		90		0.90298
2360	12		87		0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
1325	1337	CAC CAC CAC CAC C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain