SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10386

Length: 2707 nt

UniGene Fasta

>sp_v3.0_unigene10386
ATGGGGACGGAAACGATGACACCAACACTTTGTCGATAATTTTTGAAAAGTCGGGAGCCGACTGTGCCAGAGATTTCGGCCGGAAAAGCAGTCCCTCTAGAAAGTCAGCTTGACAGCACCTGTAGGGTTTGTTCAAAGCTCGTGGATTGAAAAGAAGACCCGAATCAGCGAAGTCGTGTCCTTAAAGTAGCAATTAACAGCTTGATCTCTGATCCTTTGCATCCAGATCAAGTTTGCAATTCAAAGGATTCATATACAAAGCCGAATGATTGCCATTTGATGCAACTTAGTGGAGTTGGAGCCATTTAGCAGTGCCGAATCTCGAAGAAAAGGAAAGCTCTGAGCCATGGCAAATGCAGAGAGTTACATTGTAAAGGTCGAGGATGGCAAACAATCTCGAGATGGCAGGCCTTCGATGGGGCATGTCTATCGCAGCATTGATGCGAAGAACGGATTTCCGAGCCCTCCGCAGGGGATTGAGAGCTGTTGGGACATCTTCAGCCTTGCTGTCCAAAAACACCCAGAGAATCCAATGTTAGGTCGGCGTGAGATCGTAAATGGGCAGGCAGGTGAATATACATGGATGACATACCAGGAAGTTTACAACATAGTTATCAAAGTTGGATCTGCTATTAGGAGCTGTGGTCTTGGGCCGGGAGGTCGTTGTGGTATATATGGAGCAAATTGCCCTGAATGGATTATGAGCATGGAGGCTTGTAATGGGCATGGAATTTATTGTGTTCCTTTGTACGATACCCTTGGTTCGGATGCTGTTGAGTTCATCATTCGTCATGCAGAGGTCTCAATTGCCTTTGTCCAAGAGGCAAAGATTCCTGCGATTTTGAAATGCTTGCCGGCATGTGTAGACCATCTGAAGACAATTGTGAGCTTTGGCAAAATCACAGATTCCCAGAGAGAAGAAATTGAACGGCTAGGACTCAAAGTCTATACTTGGAATGACTTTTTGTTGCTGGGTGAGGAAAGGAGGTTTGAACTATTATTACCCAAAAAAAGCGATATCTGCACAATAATGTACACTAGTGGCACAACTGGTGAACCTAAAGGTGTATTGATCACAAATGAAAACGTTGTTTCTATGGTGACCGGAATTGGTTATTTTCTTAAATGTCAGAATGAAGAGCTCACGGAGAAGGATGTTTATCTCTCGTTTCTTCCTCTAGCACATATATTTGATCGGGTGATAGAGGAATTTTTCATATCAAAAAGTGCTTCAATAGGCTTCTGGCGCGGGGATGTGAAACTTTTGGTGGAGGATATTGCAGAACTAAAACCAACGGTCTTCTGTGGTGTCCCACGTGTCTTTGATCGCATATATTCAGGTTTAAACCAGAAGATCGCTGCTGGAGGATTTTTGAATAGAAAAGTGTTTGAATTTGCATACAAATACAAGCTCAATAATATGCGCAAAGGGTTGAAACATGAAAAAGCATCTCCACTTTTTGATAAAATTGTCTTCAGCAAGATTAAACAAGGTCTGGGAGGACGTGTCCGTGTAATGTTATCAGGAGCAGCTCCGCTTGCAAAACATGTGGAAGAGTTTCTACGAGTAGTCACTTGTTGCCATGTTGTACAGGGCTATGGTTTGACAGAAACTTGCGCGGGAAGTTTTGTTTCCCTTCCAAATGTAATGTCAATGATCGGGACTGTTGGTCCACCTGTTCCAAATATTGATGTCTGCCTTGAGTCTGTCCCTGAAATGGGATATGATGCACTTTCAGAAGTACCGCGTGGAGAGGTTTGTATAAGGGGCAAAACCTTATTTGCTGGTTATTACAAGCGTGAAGACCTTACAAATGAGGTTTTGGTTGATGGTTGGTTTCACACAGGTGACATTGGGGAGTGGCAGGCGAATGGAGCACTAAAAATCATTGATAGAAAAAAAAATATATTTAAGCTTTCACAAGGAGAATATGTTGCAGTGGAAAATCTCGAGAATGTGTATGGCCAGTGTTCTGCTATTGATTCGATTTGGGTTTACGGAAATAGCTTCGAATCTTGTCTGGTTGCTGTTGTTATACCTAATCAACGAGCACTTGAAAGTTGGGCCACAGATAATGGACAAACTGGAGATTTTACTGCGTTGTGCCGAAATCCCAAGGCAAAAGAATACATTTTGAATGAACTTAATGCAGTTGCTAAAAGTAGCAAGTTAAAGGGTTTCGAGTGTGTAAGAGCTATCCACCTTGATCCTGTGCCATTTGATATGGAAAGAGACTTGATTACTCCCACATTTAAAATGAAGCGGCCACAACTACTGAAATACTACAAGGATATTATTGAAGATTTATACAAAAGCCTCAAATGAGTTGCAGTGCACGCAAAGTGAGAAATCACAATAAATTAGAATATCCTTGTCTATATTGAATCTTATTTATTTAATGGTGTCATGTACAAGGCCTGATTTATGTCCCATTAGAATGCAACGCTTCTATTATTTCCCTTGTAATCTTTTTCTTTGTTAAACGGGGCATATTATAGGGCTATGTATATGCTGATTTTCATAATAAAATTAGGAAAAGGCCATCTGGTTAATGATTGGCTACCAACTTATGCTATTCAATACATATTTTCTTAATGTATTTTTTTGGGATGAAAAGCTAATCTAAGTAATGGCTTTTTCATGGTAGGGATTGCTAATATTTATTATAGAAATAGCAACAAAGTACTGTTAAAATGTTAGTAACTT

Ace file of the UniGene sp_v3.0_unigene10386

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ACS-like protein n=1 Tax=Gossypium hirsutum RepID=Q2I824_GOSHI	-	-	0.0	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Sma3	Putative acyl-CoA synthetase	-	-	4.626e-23	-

Source	ECs	Term	Type	e value	Identity
Sma3	Long-chain-fatty-acid--CoA ligase.	EC:6.2.1.3	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fatty acid metabolism	00071		0.0	%
Sma3	Metabolic pathways	01100		0.0	%

Source	Gene names
Sma3	8F2.21; ACS1; ACS2; AT2G47240; AT4g11030; AT4g23850; At1g49430; At1g64400; At2g47240; At3g05970; At4g11030; At4g23850; AtLACS6; CHLREDRAFT_111160; CHLREDRAFT_113915; CHLREDRAFT_123147; F13F21.14; F15H21.7; F2O10.7; F8M12.15; GSVIVT00006758001; GSVIVT00019

Source	GOs	Term	Type	Identity
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	long-chain fatty acid-CoA ligase activity	GO:0004467	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	cutin biosynthetic process	GO:0010143	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G23850.1	LACS4 AMP-dependent synthetase and ligase family protein chr4:12403720-12408263 REVERSE LENGTH=666	66%
RefSeq	Arabidopsis thaliana	NP_194116.1	long chain acyl-CoA synthetase 4 [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002304555.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACR7

Fln msg: your sequence is longer than subject: 660 - 197

Fln protein: MANAESYIVKVEDGKQSRDGRPSMGHVYRSIDAKNGFPSPPQGIESCWDIFSLAVQKHPENPMLGRREIVNGQAGEYTWMTYQEVYNIVIKVGSAIRSCGLGPGGRCGIYGANCPEWIMSMEACNGHGIYCVPLYDTLGSDAVEFIIRHAEVSIAFVQEAKIPAILKCLPACVDHLKTIVSFGKITDSQREEIERLGLKVYTWNDFLLLGEERRFELLLPKKSDICTIMYTSGTTGEPKGVLITNENVVSMVTGIGYFLKCQNEELTEKDVYLSFLPLAHIFDRVIEEFFISKSASIGFWRGDVKLLVEDIAELKPTVFCGVPRVFDRIYSGLNQKIAAGGFLNRKVFEFAYKYKLNNMRKGLKHEKASPLFDKIVFSKIKQGLGGRVRVMLSGAAPLAKHVEEFLRVVTCCHVVQGYGLTETCAGSFVSLPNVMSMIGTVGPPVPNIDVCLESVPEMGYDALSEVPRGEVCIRGKTLFAGYYKREDLTNEVLVDGWFHTGDIGEWQANGALKIIDRKKNIFKLSQGEYVAVENLENVYGQCSAIDSIWVYGNSFESCLVAVVIPNQRALESWATDNGQTGDFTALCRNPKAKEYILNELNAVAKSSKLKGFECVRAIHLDPVPFDMERDLITPTFKMKRPQLLKYYKDIIEDLYKSLK*

Protein Length: 661

Fln nts: ATGGGGACGGAAACGATGACACCAACACTTTGTCGATAATTTTTGAAAAGTCGGGAGCCGACTGTGCCAGAGATTTCGGCCGGAAAAGCAGTCCCTCTAGAAAGTCAGCTTGACAGCACCTGTAGGGTTTGTTCAAAGCTCGTGGATTGAAAAGAAGACCCGAATCAGCGAAGTCGTGTCCTTAAAGTAGCAATTAACAGCTTGATCTCTGATCCTTTGCATCCAGATCAAGTTTGCAATTCAAAGGATTCATATACAAAGCCGAATGATTGCCATTTGATGCAACTTAGTGGAGTTGGAGCCATTTAGCAGTGCCGAATCTCGAAGAAAAGGAAAGCTCTGAGCC_-_ATGGCAAATGCAGAGAGTTACATTGTAAAGGTCGAGGATGGCAAACAATCTCGAGATGGCAGGCCTTCGATGGGGCATGTCTATCGCAGCATTGATGCGAAGAACGGATTTCCGAGCCCTCCGCAGGGGATTGAGAGCTGTTGGGACATCTTCAGCCTTGCTGTCCAAAAACACCCAGAGAATCCAATGTTAGGTCGGCGTGAGATCGTAAATGGGCAGGCAGGTGAATATACATGGATGACATACCAGGAAGTTTACAACATAGTTATCAAAGTTGGATCTGCTATTAGGAGCTGTGGTCTTGGGCCGGGAGGTCGTTGTGGTATATATGGAGCAAATTGCCCTGAATGGATTATGAGCATGGAGGCTTGTAATGGGCATGGAATTTATTGTGTTCCTTTGTACGATACCCTTGGTTCGGATGCTGTTGAGTTCATCATTCGTCATGCAGAGGTCTCAATTGCCTTTGTCCAAGAGGCAAAGATTCCTGCGATTTTGAAATGCTTGCCGGCATGTGTAGACCATCTGAAGACAATTGTGAGCTTTGGCAAAATCACAGATTCCCAGAGAGAAGAAATTGAACGGCTAGGACTCAAAGTCTATACTTGGAATGACTTTTTGTTGCTGGGTGAGGAAAGGAGGTTTGAACTATTATTACCCAAAAAAAGCGATATCTGCACAATAATGTACACTAGTGGCACAACTGGTGAACCTAAAGGTGTATTGATCACAAATGAAAACGTTGTTTCTATGGTGACCGGAATTGGTTATTTTCTTAAATGTCAGAATGAAGAGCTCACGGAGAAGGATGTTTATCTCTCGTTTCTTCCTCTAGCACATATATTTGATCGGGTGATAGAGGAATTTTTCATATCAAAAAGTGCTTCAATAGGCTTCTGGCGCGGGGATGTGAAACTTTTGGTGGAGGATATTGCAGAACTAAAACCAACGGTCTTCTGTGGTGTCCCACGTGTCTTTGATCGCATATATTCAGGTTTAAACCAGAAGATCGCTGCTGGAGGATTTTTGAATAGAAAAGTGTTTGAATTTGCATACAAATACAAGCTCAATAATATGCGCAAAGGGTTGAAACATGAAAAAGCATCTCCACTTTTTGATAAAATTGTCTTCAGCAAGATTAAACAAGGTCTGGGAGGACGTGTCCGTGTAATGTTATCAGGAGCAGCTCCGCTTGCAAAACATGTGGAAGAGTTTCTACGAGTAGTCACTTGTTGCCATGTTGTACAGGGCTATGGTTTGACAGAAACTTGCGCGGGAAGTTTTGTTTCCCTTCCAAATGTAATGTCAATGATCGGGACTGTTGGTCCACCTGTTCCAAATATTGATGTCTGCCTTGAGTCTGTCCCTGAAATGGGATATGATGCACTTTCAGAAGTACCGCGTGGAGAGGTTTGTATAAGGGGCAAAACCTTATTTGCTGGTTATTACAAGCGTGAAGACCTTACAAATGAGGTTTTGGTTGATGGTTGGTTTCACACAGGTGACATTGGGGAGTGGCAGGCGAATGGAGCACTAAAAATCATTGATAGAAAAAAAAATATATTTAAGCTTTCACAAGGAGAATATGTTGCAGTGGAAAATCTCGAGAATGTGTATGGCCAGTGTTCTGCTATTGATTCGATTTGGGTTTACGGAAATAGCTTCGAATCTTGTCTGGTTGCTGTTGTTATACCTAATCAACGAGCACTTGAAAGTTGGGCCACAGATAATGGACAAACTGGAGATTTTACTGCGTTGTGCCGAAATCCCAAGGCAAAAGAATACATTTTGAATGAACTTAATGCAGTTGCTAAAAGTAGCAAGTTAAAGGGTTTCGAGTGTGTAAGAGCTATCCACCTTGATCCTGTGCCATTTGATATGGAAAGAGACTTGATTACTCCCACATTTAAAATGAAGCGGCCACAACTACTGAAATACTACAAGGATATTATTGAAGATTTATACAAAAGCCTCAAATGA___GTTGCAGTGCACGCAAAGTGAGAAATCACAATAAATTAGAATATCCTTGTCTATATTGAATCTTATTTATTTAATGGTGTCATGTACAAGGCCTGATTTATGTCCCATTAGAATGCAACGCTTCTATTATTTCCCTTGTAATCTTTTTCTTTGTTAAACGGGGCATATTATAGGGCTATGTATATGCTGATTTTCATAATAAAATTAGGAAAAGGCCATCTGGTTAATGATTGGCTACCAACTTATGCTATTCAATACATATTTTCTTAATGTATTTTTTTGGGATGAAAAGCTAATCTAAGTAATGGCTTTTTCATGGTAGGGATTGCTAATATTTATTATAGAAATAGCAACAAAGTACTGTTAAAATGTTAGTAACTT

Fln Alignment:

Contig10386___VPRGEVCIRGKTLFAGYYKREDLTNEVL-VDG----WFHTGDIGEWQANGALKIIDRKKNIFKLSQGEYVAVENLENVYGQCSAIDSIWVYGNSFESCLVAVVIPNQRALESWATDNGQT-GDFTALCRNPKAKEYILNELNAVAKSSKLKGFECVRAIHLDPVPFDMERDLITPTFKMKRPQLLKYYKDIIEDLY
D5ACR7_______________MPRGEIVIGGPHVTLGYFKNKEKTDESYKVDERGMRWFYTGDIGRFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVCHYLDNFMLHADPFHSYCVALVVPSRQALESWAQKEGIIYKDFSDLCQKSEAIKEVQSSILEVGKSAKLDKFEIPSKIKLLPDPWTPETGLVTAALKLKREVIKKTFAEELNKLY

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
184		33		66	0.997452
216	25	75			0.996473
218			25	75	0.996473
219			25	75	0.996473
221		75	25		0.996473
316	75	25			0.996473
394	20	80			0.995493
395	20		80		0.995493
458		75		25	0.996473
497	14	85			0.993533
512	14	85			0.993533
514	85	14			0.993533
674	85			14	0.999981
1069	12		87		0.992554
1070		11		88	0.923564
1910	11			88	0.923564
2610			91	8	0.991935

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain