SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10362

Length: 2273 nt

UniGene Fasta

>sp_v3.0_unigene10362
GTTTTTGTCAAAACAGCTTTTAAATTTGCATCCGGTTTTAGGTTTCAGAAACAAAAAAGAGTTATAATTCGCAGGAAAACAACCTGCAAAAACCAAAAGCACAGAAGCAGGAGGAAAGAGAGCCCGAGAAACGGCAAACGCAGTAACTAATCTCGAGGCTCCAACGCCTCCCCGTCGACGTCACGGGTTCGAATCACCGCGCTTCGGTTTTCCTGCCGTCGTCTCCGGGTCCCTACTGAATACGGTCCCGAGGGTTTCGAAAACCCGACATTGAACTTGACTGAGTTGTACAGCTTTCCAATCCACGCGATGGCGACGGAAGGGGCTTCTAACCAGGAAGAAAATGCTCCCAAAGGCGGCGAGTTGTTGTTTTGTGGTGCAACGCAGTGGGATTTGGTGGGCCGGAGGACCGGGGACATAAAAAGCGATAGAAATCTCGTATCTCCTACACGTCTGCGGGCTCTAACGGGGATCAACATATCTTTCGTAGCTGCCGGCACTGCATCATGTCATTGTGTTGCGCTGGATGTTGATGGCCGTTGTTACACTTGGGGCCGCAATGAGAAGGGACAACTTGGACATGGAGATCTAATACAACGTGACATTCCAACCAGGGTACTAGGATTGTCAAACTATAGAATTGTAAAAGCAGGAGGTGGAAGGCAGCATACAGTTGTAGTGACAGACGATGGGATTTCTTTTGCATTTGGTTGGAACAAGCACGGGCAATTGGGTTCTGGATCTACAAGAAATGAGGTGGAGAGCTCTCCAGTGCGGTGTCTTGTATCAGATGCCACAAATGCTGTGTGTGGAGCTGATTTCACTGTGTGGTTATCTTCTGTACAAGGCTCTACTATCTTGACTGCTGGTCTTCCACAATATGGTCAGCTTGGTCATGGAACAGATAATGAGTATAATGCAAAAGAGGGTACAGTGAAACTGGCCTATGAAGCACAACCCCGTCCTCGCACAATTGCTGCCTTATCAGCAAAGACAATCACTAAAGTTGCATGTGGTAACAATCACACAGTTGCAGTGGACTCGGATGGATTTGTTTACACATGGGGATTTGGAGGGTATGGAAGGCTAGGGCATAGGGAACAGAAAGATGAGTGGACTCCACGGCTTGTGGAGACTTTTCAAAAGAGCAACCTGATTCCTCCTACAGCTGTGGTTGCAGCTGGTGCCACTTACTCTGCATGTACTGCAGGAGGTGGTCAACTTTACATGTGGGGTAAAGTGAAGCCGACATCTGATAATTGGATGTACCCAAAACCTGTTTTTGATTTAAGTGGGTGGCAAATACGATGCATGGATTCTGGTAATACACATAGTGTATGTGGTGCAGATGATTCAGTTATTGGCTTTGGCACATCCCAGTATGGAGAACTCGGATTCGGCCCACTTGGCCCAAAGTCATCCGCAAATCCGAAGAAGATTGATATTCTTGAAGGAATGCACGCGATCAGTGTTGCTTGTGGTATTGGACACTCCCTTATAGTGGTTGATCGAACGAATATGGGCGATCGAATAGAAAAGCTTGATGTATATGACGGCTCGAGTCCCACAGAAGCTGCTGTGGCGGGCGTGGAGGATACACCAAACAAAAAACAGTCTGCAATCAAATCAGGAAAAAAACGAAAAGGTGGTTCTGATGGGGCAACTGCTGAAGCTTCTGTCAAAGCTGAGAAAAAGCCTCGCAAAAAGGTTTCAAAGAAAAAAGATTTATCAGACACAGAGAATAGCGATGATGATGACGATGATGATGATGATGGTGATGATGATGATGACGATGATGATGAGGTTTATAAAGAAGGGGCAAATGGTTCATCAAAGAGTAAAACTAAGGGCCGTGGTCGTGGACGTGGTAAATCCAGTGGAAAAAAGGCAATTAAGGATCATACGAGCAGTACAACTGCTAGAGGCCGTGGAAGAGGACGAGCCACCAGAGGTGGCAAGGCTAAATAAGATATGCAGGATTTCAAACAGTTATCAACCTTTAGGATATATGATATCAATTTTTCAAGTACATCCATTTGTTTTCAGAAACAAGTAACTATTTTTCAATATCTACTGCCCACTTTGCACACCTGTGGGAAGGTAAATTTTGTATATTTAGATTTTTATTGGAACGGCATATTTATTATGAGCCAAGGCTTACCCTGCTACCCTCATGTATTCATTGGTTTGTAATTTAGACTTTATTGATTCAAGGGCATCAACCTTTTTTCAAAACATTGGCTAATATATTTTTGTTTGTTAATTTAAAAAAA

Ace file of the UniGene sp_v3.0_unigene10362

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein RCC2, putative n=1 Tax=Ricinus communis RepID=B9R853_RICCO	-	-	0.0	68%
FL-Next	tr=Protein RCC2, putative; Ricinus communis (Castor bean).	-	-	0.0	68%

Source	Gene names
Sma3	At1g19880; CHLREDRAFT_194222; F6F9.7; GSVIVT00014479001; MICPUCDRAFT_37010; MICPUN_67407; OSJNBa0084K01.12; OSTLU_2338; Os04g0662800; OsI_17792; OsJ_16512; Ot18g01050; PHYPADRAFT_114453; POPTRDRAFT_816029; POPTRDRAFT_831668; RCOM_1596800; VITISV_033889;

Source	GOs	Term	Type	e value	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G19880.1	Regulator of chromosome condensation (RCC1) family protein chr1:6900648-6903818 REVERSE LENGTH=538	66%
RefSeq	Arabidopsis thaliana	NP_173417.2	regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002301995.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9R853

Fln msg:

Fln protein: MATEGASNQEENAPKGGELLFCGATQWDLVGRRTGDIKSDRNLVSPTRLRALTGINISFVAAGTASCHCVALDVDGRCYTWGRNEKGQLGHGDLIQRDIPTRVLGLSNYRIVKAGGGRQHTVVVTDDGISFAFGWNKHGQLGSGSTRNEVESSPVRCLVSDATNAVCGADFTVWLSSVQGSTILTAGLPQYGQLGHGTDNEYNAKEGTVKLAYEAQPRPRTIAALSAKTITKVACGNNHTVAVDSDGFVYTWGFGGYGRLGHREQKDEWTPRLVETFQKSNLIPPTAVVAAGATYSACTAGGGQLYMWGKVKPTSDNWMYPKPVFDLSGWQIRCMDSGNTHSVCGADDSVIGFGTSQYGELGFGPLGPKSSANPKKIDILEGMHAISVACGIGHSLIVVDRTNMGDRIEKLDVYDGSSPTEAAVAGVEDTPNKKQSAIKSGKKRKGGSDGATAEASVKAEKKPRKKVSKKKDLSDTENSDDDDDDDDDGDDDDDDDDEVYKEGANGSSKSKTKGRGRGRGKSSGKKAIKDHTSSTTARGRGRGRATRGGKAK*

Protein Length: 554

Fln nts: GTTTTTGTCAAAACAGCTTTTAAATTTGCATCCGGTTTTAGGTTTCAGAAACAAAAAAGAGTTATAATTCGCAGGAAAACAACCTGCAAAAACCAAAAGCACAGAAGCAGGAGGAAAGAGAGCCCGAGAAACGGCAAACGCAGTAACTAATCTCGAGGCTCCAACGCCTCCCCGTCGACGTCACGGGTTCGAATCACCGCGCTTCGGTTTTCCTGCCGTCGTCTCCGGGTCCCTACTGAATACGGTCCCGAGGGTTTCGAAAACCCGACATTGAACTTGACTGAGTTGTACAGCTTTCCAATCCACGCG_-_ATGGCGACGGAAGGGGCTTCTAACCAGGAAGAAAATGCTCCCAAAGGCGGCGAGTTGTTGTTTTGTGGTGCAACGCAGTGGGATTTGGTGGGCCGGAGGACCGGGGACATAAAAAGCGATAGAAATCTCGTATCTCCTACACGTCTGCGGGCTCTAACGGGGATCAACATATCTTTCGTAGCTGCCGGCACTGCATCATGTCATTGTGTTGCGCTGGATGTTGATGGCCGTTGTTACACTTGGGGCCGCAATGAGAAGGGACAACTTGGACATGGAGATCTAATACAACGTGACATTCCAACCAGGGTACTAGGATTGTCAAACTATAGAATTGTAAAAGCAGGAGGTGGAAGGCAGCATACAGTTGTAGTGACAGACGATGGGATTTCTTTTGCATTTGGTTGGAACAAGCACGGGCAATTGGGTTCTGGATCTACAAGAAATGAGGTGGAGAGCTCTCCAGTGCGGTGTCTTGTATCAGATGCCACAAATGCTGTGTGTGGAGCTGATTTCACTGTGTGGTTATCTTCTGTACAAGGCTCTACTATCTTGACTGCTGGTCTTCCACAATATGGTCAGCTTGGTCATGGAACAGATAATGAGTATAATGCAAAAGAGGGTACAGTGAAACTGGCCTATGAAGCACAACCCCGTCCTCGCACAATTGCTGCCTTATCAGCAAAGACAATCACTAAAGTTGCATGTGGTAACAATCACACAGTTGCAGTGGACTCGGATGGATTTGTTTACACATGGGGATTTGGAGGGTATGGAAGGCTAGGGCATAGGGAACAGAAAGATGAGTGGACTCCACGGCTTGTGGAGACTTTTCAAAAGAGCAACCTGATTCCTCCTACAGCTGTGGTTGCAGCTGGTGCCACTTACTCTGCATGTACTGCAGGAGGTGGTCAACTTTACATGTGGGGTAAAGTGAAGCCGACATCTGATAATTGGATGTACCCAAAACCTGTTTTTGATTTAAGTGGGTGGCAAATACGATGCATGGATTCTGGTAATACACATAGTGTATGTGGTGCAGATGATTCAGTTATTGGCTTTGGCACATCCCAGTATGGAGAACTCGGATTCGGCCCACTTGGCCCAAAGTCATCCGCAAATCCGAAGAAGATTGATATTCTTGAAGGAATGCACGCGATCAGTGTTGCTTGTGGTATTGGACACTCCCTTATAGTGGTTGATCGAACGAATATGGGCGATCGAATAGAAAAGCTTGATGTATATGACGGCTCGAGTCCCACAGAAGCTGCTGTGGCGGGCGTGGAGGATACACCAAACAAAAAACAGTCTGCAATCAAATCAGGAAAAAAACGAAAAGGTGGTTCTGATGGGGCAACTGCTGAAGCTTCTGTCAAAGCTGAGAAAAAGCCTCGCAAAAAGGTTTCAAAGAAAAAAGATTTATCAGACACAGAGAATAGCGATGATGATGACGATGATGATGATGATGGTGATGATGATGATGACGATGATGATGAGGTTTATAAAGAAGGGGCAAATGGTTCATCAAAGAGTAAAACTAAGGGCCGTGGTCGTGGACGTGGTAAATCCAGTGGAAAAAAGGCAATTAAGGATCATACGAGCAGTACAACTGCTAGAGGCCGTGGAAGAGGACGAGCCACCAGAGGTGGCAAGGCTAAATAA___GATATGCAGGATTTCAAACAGTTATCAACCTTTAGGATATATGATATCAATTTTTCAAGTACATCCATTTGTTTTCAGAAACAAGTAACTATTTTTCAATATCTACTGCCCACTTTGCACACCTGTGGGAAGGTAAATTTTGTATATTTAGATTTTTATTGGAACGGCATATTTATTATGAGCCAAGGCTTACCCTGCTACCCTCATGTATTCATTGGTTTGTAATTTAGACTTTATTGATTCAAGGGCATCAACCTTTTTTCAAAACATTGGCTAATATATTTTTGTTTGTTAATTTAAAAAAA

Fln Alignment:

Contig10362___EGASNQEEN----APKGGELLFCGATQWDLVGRRTGDIKSDRNLVSPTRLRALTGINISFVAAGTASCHCVALDVDGRCYTWGRNEKGQLGHGDLIQRDIPTRVLGLSNYRIVKAGGGRQHTVVVTDDGISFAFGWNKHGQLGSGSTRNEVESSPVRCLVSDATNAVCGADFTVWLSSVQGSTILTAGLPQYGQLGHGTDNEYNAKEGTVKLAYEAQPRPRTIAALSAKTITKVACGNNHTVAVDSDGFVYTWGFGGYGRLGHREQKDEWTPRLVETFQKSNLIPPTAVVAAGATYSACTAGGGQLYMWGKVKPTSDNWMYPKPVFDLSGWQIRCMDSGNTHSVCGADDSVIGFGTSQYGELGFGPLGPKSSANPKKIDILEGMHAISVACGIGHSLIVVDRTNMGDRIEKLDVYDGSSPTEAAVAGVEDTPNKKQSA
B9R853_______________EDKKGDEENEVAAAEKGGELLFCGATCWDIIGRKKG--AQEGNLISPTRLRPLVGVDIRFVASGCSSCHCVALDVEGRCYTWGRNEKGQLGHGDRIQRDRPTVVSELSKYKIIRAGAGRSHTVVVTEDGLSLAFGWNKHGQLGSGSAKSEVESSPVRCLVSDVKNTACGAEFTVWLSSVEGASILTAGLPQYGQLGHGTDNEYNTKDSSVRLAYEAQPRPRAIASLSGETIVKVACGTNHTVAVDSNGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRHNVLPPDAVVSAGSVNSSCTAGGGQLYMWGKIKNTGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADNSCISWGHAQYGELGYGPNAQKSSAVPKKVDILEGMHVIGVACGMGHSMVIVDRANVDNRLEQLDIYDGKASGEGSEEPENKAPAAKQNA

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
90	66			33	0.997452
91	66		33		0.997452
92	66		33		0.997452
93		66	33		0.997452
94		66	33		0.997452
105	80		20		0.995493
106	80			20	0.995493
107			80	20	0.995493
109	80			20	0.995493
350		66		33	0.997452
388			25	75	0.996473
548		25	75		0.996473
573	80			20	0.995493
574		80	20		0.995493
575			20	80	0.995493
576			20	80	0.995493
649			83	16	0.994512
650		83	16		0.994512
651	83		16		0.994512
774		75	25		0.996473
876	25		75		0.996473
879	25		75		0.996473
893	20		80		0.995493
895		75	25		0.996473
896	75		25		0.996473
897			25	75	0.996473
914	75		25		0.996473
970	25		75		0.996473
1214	25		75		0.996473
1219		66	33		0.997452
1249	75		25		0.996473
1271		75		25	0.996473
1288		25		75	0.996473
1485		13		86	0.999973
1524		85		14	0.999981
1603	88			11	0.923564
1604	87			12	0.992554
2216	10		89		0.999919

SSRs (tot: 2)

Start position	End position	Sequence	Length
1759	1774	GAT GAT GAT GAT GAT G	16
1776	1790	TGA TGA TGA TGA TGA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain