SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10196

Length: 1950 nt

UniGene Fasta

>sp_v3.0_unigene10196
ATGGGATACAGCACCTTTTCTTTTGCATAAAGCCGTCGTGACCTTGGCTGTCACTCAATCTTTTGGACATTTAATTTCGTCGATCTTTCCCATTGTCCATCGAGAAAAAAGGGTCCTGGAACACCTACCTAAATGTAAAGCCGATGGATTTCCTCTGTATCGACCGTGAATCGAACCCTGTTTGCCGGAGTTTTTGGCTAACGATGTATTTGTAACACGGAATGAGTTCCGTTCCACGAAGCTTCATACAGAATCCCGCCGGACAGGCGGAAGTTTAGAAATGGAGGATTTGGGAGGTTCTGAAGTTTGTTTTCTCTGATAATCGGATAGGATATTTTCAGGCTTTTCTACGGTTTTTTTTAGCGCCTTGAAGGGCCGCGGGTTTGTAATGCGCGAAGGATAGGGTTCTTTGCATTTTAGTGCAAGAATATGTGTCCTTTTTCATTTCTCCCTTGATTTTTTCCCGAAATATGGCAATTTCAAGGTTTTCAACAAACTGCTATGTTCTCTCAGCCCTTTCTTCTTTTCCTGCGGCTCGAGCGTGAGGTCGATGTATTCATTACTGTTAAATTTTCTTTTGTTCTTTTTTCCATTTTCGATGCCTCTGTTGTGTTCTTTTTTCTGAGATTTTTGCAGTCTTCGAAGGTTCGAGTTTTTCTCAGCCTTGGAAGTATCTCTTTTGGTCTTAGGTGATGGAATTGTAACCTTCCCGAACAACGGCCGTAGAGGTCTGGAGATTCGCATGTAACAAGATAAAATGGCGCAATCCGGGGAACAGCCTAATGAAGCCACGGTTCCTCGCCCTGCTGATTCTCATAGATCTATACCAACGCCGTTTCTCATGAAAACCTACCGGCTTGTCGACGATCCGAGCTTGAACGACATTATTTCATGGAACGAAGACGGCACTACGTTCATCGTTTGGCGGCCTGCGGAATTCGCCCGTGATTTGCTGCCGAATTACTTTAAACACAACAATTTCTCCAGTTTTGTCCGGCAGCTGAATACATACGGATTTCGAAAGATTGTGCCAGACAGATGGGAGTTCGCCAACGAGTTTTTTCGCAGAGGAGAAAAGAAATTGCTTTGCGAGATTCATAGAAGAAAGAATCCACAAGCCAATGGTGCTACGGCTAATAGGCCTGCATCTCCGTCCATTACAGGCGAGGATCAGCAAGGTTGTTCTTCCACATTGCTCCCTCTGTCCTCTCAGGCTGAAGCCAGTGGACTTTTGGACGAAAATGAGAGGCTGAAACAGCAGAATTTGTTCTTGATGTCAGAGGTAGCGCAGATAAAAGGTTTGTGCAGTGATATTCTGGCATTTATGTCTAAGCATGCAAATATATCCGCAGAAAGTTTAAGAAAATCATTCGACCTACACAACGTTCCGGATCGTTTTCAGCAAGGAGAGCAGATGGACGGATCCCCGACGCAGTCTAAAGATTCATGTCAAAGGACTCAGCTGTGCTCATCCGTTCATCATTCTGAAAACGAGACAGCAAACAGCTGCGGAAATTTCAGAGAAATGGACGACAGTAAATGCGTTGATTCTGTCAAGGCCGAAGATAAAGATAACTCCGGCAACCCCAAACTTTTCGGCGTGCCTTTGCTTGGCAAGAAAAGGTCGCGCCCTTGCTCCCCAGATGATGACGAGAAACCCGAAGTGAACGCACATCCTTTTTGCGTCGGAAACGATGCAGCTTTAAAATGCGTGAAAGCAGAACCAGGACTGGAAATGGATCTGAGACAGAAACAGGCTCCATGGCTGAAGTTTTTCTCTGTTCGTAACGAGAAAGTCTGCAATTAATGTTTGATCACAAGATCGACGTCGATTTTGTCTCATAGAATCATCGTCCGGTTGTAAGTTTCCTATGTAATCCCATCCATAAAAATGTTTACTGCAGTATTCCCCATACATTAATAAATTGTCTGTTAATTATTAGTTCTTCA

Ace file of the UniGene sp_v3.0_unigene10196

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heat stress transcription factor B-2b n=3 Tax=Oryza sativa RepID=HFB2B_ORYSJ	-	-	0.0	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Sma3	Heat shock factor protein, putative	-	-	4.734e-19	-

Source	Gene names
Sma3	23.t00064; At1g32330; At1g46264; At2g41690; At3g02990; At3g22830; At3g24520; At3g51910; At3g63350; At4g17750; At4g18880; At4g36990; At5g03720; At5g16820; At5g43840; B1129G05.5; B1342C04.35; CHLREDRAFT_122706; F13C5.50; F13E7.6; F16M2.200; F17C15.140; F27G

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to high light intensity	GO:0009644	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock factor (HSF)-type, DNA-binding	IPR000232	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUX6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 58 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 350 - 489

Fln protein: MAQSGEQPNEATVPRPADSHRSIPTPFLMKTYRLVDDPSLNDIISWNEDGTTFIVWRPAEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFRRGEKKLLCEIHRRKNPQANGATANRPASPSITGEDQQGCSSTLLPLSSQAEASGLLDENERLKQQNLFLMSEVAQIKGLCSDILAFMSKHANISAESLRKSFDLHNVPDRFQQGEQMDGSPTQSKDSCQRTQLCSSVHHSENETANSCGNFREMDDSKCVDSVKAEDKDNSGNPKLFGVPLLGKKRSRPCSPDDDEKPEVNAHPFCVGNDAALKCVKAEPGLEMDLRQKQAPWLKFFSVRNEKVCN*

Protein Length: 351

Fln nts: ATGGGATACAGCACCTTTTCTTTTGCATAAAGCCGTCGTGACCTTGGCTGTCACTCAATCTTTTGGACATTTAATTTCGTCGATCTTTCCCATTGTCCATCGAGAAAAAAGGGTCCTGGAACACCTACCTAAATGTAAAGCCGATGGATTTCCTCTGTATCGACCGTGAATCGAACCCTGTTTGCCGGAGTTTTTGGCTAACGATGTATTTGTAACACGGAATGAGTTCCGTTCCACGAAGCTTCATACAGAATCCCGCCGGACAGGCGGAAGTTTAGAAATGGAGGATTTGGGAGGTTCTGAAGTTTGTTTTCTCTGATAATCGGATAGGATATTTTCAGGCTTTTCTACGGTTTTTTTTAGCGCCTTGAAGGGCCGCGGGTTTGTAATGCGCGAAGGATAGGGTTCTTTGCATTTTAGTGCAAGAATATGTGTCCTTTTTCATTTCTCCCTTGATTTTTTCCCGAAATATGGCAATTTCAAGGTTTTCAACAAACTGCTATGTTCTCTCAGCCCTTTCTTCTTTTCCTGCGGCTCGAGCGTGAGGTCGATGTATTCATTACTGTTAAATTTTCTTTTGTTCTTTTTTCCATTTTCGATGCCTCTGTTGTGTTCTTTTTTCTGAGATTTTTGCAGTCTTCGAAGGTTCGAGTTTTTCTCAGCCTTGGAAGTATCTCTTTTGGTCTTAGGTGATGGAATTGTAACCTTCCCGAACAACGGCCGTAGAGGTCTGGAGATTCGCATGTAACAAGATAAA_-_ATGGCGCAATCCGGGGAACAGCCTAATGAAGCCACGGTTCCTCGCCCTGCTGATTCTCATAGATCTATACCAACGCCGTTTCTCATGAAAACCTACCGGCTTGTCGACGATCCGAGCTTGAACGACATTATTTCATGGAACGAAGACGGCACTACGTTCATCGTTTGGCGGCCTGCGGAATTCGCCCGTGATTTGCTGCCGAATTACTTTAAACACAACAATTTCTCCAGTTTTGTCCGGCAGCTGAATACATACGGATTTCGAAAGATTGTGCCAGACAGATGGGAGTTCGCCAACGAGTTTTTTCGCAGAGGAGAAAAGAAATTGCTTTGCGAGATTCATAGAAGAAAGAATCCACAAGCCAATGGTGCTACGGCTAATAGGCCTGCATCTCCGTCCATTACAGGCGAGGATCAGCAAGGTTGTTCTTCCACATTGCTCCCTCTGTCCTCTCAGGCTGAAGCCAGTGGACTTTTGGACGAAAATGAGAGGCTGAAACAGCAGAATTTGTTCTTGATGTCAGAGGTAGCGCAGATAAAAGGTTTGTGCAGTGATATTCTGGCATTTATGTCTAAGCATGCAAATATATCCGCAGAAAGTTTAAGAAAATCATTCGACCTACACAACGTTCCGGATCGTTTTCAGCAAGGAGAGCAGATGGACGGATCCCCGACGCAGTCTAAAGATTCATGTCAAAGGACTCAGCTGTGCTCATCCGTTCATCATTCTGAAAACGAGACAGCAAACAGCTGCGGAAATTTCAGAGAAATGGACGACAGTAAATGCGTTGATTCTGTCAAGGCCGAAGATAAAGATAACTCCGGCAACCCCAAACTTTTCGGCGTGCCTTTGCTTGGCAAGAAAAGGTCGCGCCCTTGCTCCCCAGATGATGACGAGAAACCCGAAGTGAACGCACATCCTTTTTGCGTCGGAAACGATGCAGCTTTAAAATGCGTGAAAGCAGAACCAGGACTGGAAATGGATCTGAGACAGAAACAGGCTCCATGGCTGAAGTTTTTCTCTGTTCGTAACGAGAAAGTCTGCAATTAATGTTTGATCACAAGATCGACGTCGATTTTGTCTCATAGAATCATCGTCCGGTTGTAAGTTTCCTATGTAATCCCATCCATAAAAATGTTTACTGCAGTATTCCCCATACATTAATAAATTGTCTGTTAATTATTAGTTCTTCA

Fln Alignment:

Contig10196___PRPADS-HRSIPTPFLMKTYRLVDDPSLNDIISWNEDGTTFIVWRPAEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFRRGEKKLLCEIHRRK---NPQANGATANRPASPSITGEDQQGCSSTLLPLSSQAEASGLLDENERLKQQNLFLMSEVAQIK
A9NUX6_______________PRPMEGLHCAGPPPFLTKTYDMVEDPLTDTVVSWSSTNNSFVVWNSHLFSSDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKLIQRRKPSCPPQFIDNLHHHHQQ-----DQQQGMGACV-----EVGQFGMVGEIEGLRRDKSVLMLEVVKLR

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
198		90		10	0.90298
339		85		14	0.993533
433		11	88		0.923564
434	11			88	0.923564
435		11	88		0.923564
438	11	88			0.923564
464	22	77			0.999999
478	88			11	0.923564
480		11		88	0.923564
481			11	88	0.923564
618		33		33	0.997753
718	33		66		0.997452
724	33		66		0.997452
866		14		85	0.993533
937	83		16		0.994512
1041		14		85	0.993533
1191	66		33		0.997452
1317	33	66			0.997452
1327		16		83	0.994512
1332	83		16		0.994512
1334		16	83		0.994512
1336	83			16	0.994512
1341	83		16		0.994512
1342	83	16			0.994512
1344	83		16		0.994512
1346	83	16			0.994512
1347	16			83	0.994512
1349		83		16	0.994512
1350		16	83		0.994512
1351	16	83			0.994512
1391	88		11		0.923564
1421	12	87			0.992554
1470		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain