SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10096

Length: 1886 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene10096 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NAD-dependent glycerol-3-phosphate dehydrogenase-like protein [Arabidopsis thaliana] gb\|AAK93645.1\| putative glycerol-3-phosphate dehydrogenase [Arabidopsis thaliana] gb\|AAM45126.1\| putative glycerol-3-phosphate dehydrogenase [Arabidopsis thaliana] gb\|AEC	-	-	0.0	68%
FL-Next	sp=Glycerol-3-phosphate dehydrogenase [NAD(+)], chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	27%
Sma3	Putative glycerol-3-phosphate dehydrogenase	-	-	1.553e-07	-

Source	Gene names
Sma3	At2g40690; CHLREDRAFT_94229; GPD1; GSVIVT00029460001; MICPUCDRAFT_34755; MICPUN_86747; OSJNBa0016A21.127; OSTLU_13848; OSTLU_31319; Os07g0229800; OsI_25428; OsJ_23610; Ot04g04100; PHYPADRAFT_137677; PHYPADRAFT_197741; POPTRDRAFT_242978; RCOM_0689940; VITI

Source	GOs	Term	Type	Identity
Sma3	glycerol-3-phosphate dehydrogenase complex	GO:0009331	Cellular Component	-
Sma3	glycerol-3-phosphate dehydrogenase [NAD+] activity	GO:0004367	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	glycerolipid biosynthetic process	GO:0045017	Biological Process	-
Sma3	glycerol-3-phosphate catabolic process	GO:0046168	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal	IPR006109	-	-
Sma3	Glycerol-3-phosphate dehydrogenase, NAD-dependent	IPR006168	-	-
Sma3	Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal	IPR011128	-	-
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G40690.1	GLY1, SFD1 NAD-dependent glycerol-3-phosphate dehydrogenase family protein chr2:16974107-16976241 FORWARD LENGTH=420	71%
RefSeq	Arabidopsis thaliana	NP_565939.1	NAD-dependent glycerol-3-phosphate dehydrogenase-like protein [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002319340.1	predicted protein, partial [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q9SCX9

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 384 - 400

Fln protein: MFYKILTRSLGLNAQVVVLGGGSFATAMAALVAQNKAEMEVSMLVRDDVVCKSINGAKFNSKYLPEHKLPKNVMATTDARAALQGADFCIHAVPVQFSATILESISEHVTPKLPFVSVSKGLELNTLRMMSQIIPQALGNPFQPVVVLSGPSFAVELMDKLPTGLMKDSYDLMPESQEQM*KLMEQLL*KPLLYLACNYAAMVAASKDKELAMAAQQLLASQYLRISTSSDVTGVEIAGALKNVLAIAAGIVEGMNLGNNCMAALVAQGCTEIRWLATKMGAKATTLTGLSGTGDIMLTCFVRLSRNRTVGVRLGSGEKLDDILASMNQVAEGVATAGAVIALAQKYHVKMPVLTAVARIIDNELTPKRAVLELMNLPQVEEV*

Protein Length: 385

Fln nts: ATGGGGCTATTCGAGCGGCAGAAGGGCATGCGTGGAGCTTTCAATGGCCGTTATATCTCCATCACAACCTTCTGGTTGGTCATTCATGAGATCAGAGATTCCAAGCAGCCCATGGGTTAGCCTTGGAAAGGGCAATTTTGATACTACTGTTGTTCTCGTTAGATGTGTGCATGGTAATAATGATGTAAAGGCAACGAAATGTAGTATCCGGGAAACAAATCCCTCCATTCCGGAAGTTAGTAGCAGGGATACTACATACTCGTCTGCTGACCAGAACGCTCCCCATGCACATAAGGAACGGAGAAAAATCGTGAAGATTGCATGGGAAAAAATAGTTAGATGGTCGAGGTCTTGGCGCCTCTTAAATTCTCGAAGGACAATGG_-_ATGTTCTACAAAATACTAACAAGGTCACTGGGATTAAATGCGCAGGTGGTCGTGCTGGGAGGTGGGTCATTTGCTACGGCAATGGCAGCATTGGTTGCTCAGAATAAAGCTGAGATGGAGGTTAGTATGCTTGTTAGAGATGATGTTGTCTGCAAATCGATCAACGGGGCTAAGTTCAACTCCAAATATTTACCAGAACACAAGCTGCCCAAAAATGTCATGGCAACAACAGATGCAAGAGCTGCTCTGCAAGGGGCTGATTTCTGCATACATGCGGTTCCTGTACAGTTCAGTGCTACTATTCTGGAAAGCATTTCGGAACATGTTACTCCAAAGTTGCCTTTTGTATCTGTCAGCAAGGGTCTTGAACTTAATACATTACGGATGATGTCCCAAATTATTCCTCAGGCACTTGGGAATCCTTTCCAACCTGTTGTTGTATTATCAGGGCCATCATTTGCCGTGGAGCTCATGGACAAGTTGCCAACAGGCCTTATGAAGGATTCTTATGACTTAATGCCTGAATCCCAAGAACAGATGTGAAAGTTGATGGAGCAACTGTTGTAGAAACCACTCTTATACTTGGCTTGCAATTATGCAGCAATGGTGGCGGCCTCAAAAGACAAGGAGTTGGCAATGGCTGCTCAGCAGCTTTTAGCTTCACAGTATTTAAGAATTAGCACTTCAAGTGATGTTACAGGAGTGGAAATTGCTGGAGCACTTAAGAACGTGCTTGCAATTGCAGCAGGTATCGTAGAAGGTATGAATCTTGGAAACAATTGTATGGCAGCCCTCGTTGCACAAGGTTGCACAGAAATACGATGGCTAGCAACAAAGATGGGTGCAAAAGCAACAACACTCACTGGCCTGTCAGGCACTGGAGACATCATGCTTACATGTTTTGTTAGACTTTCAAGAAATAGAACTGTTGGGGTGAGACTTGGCTCAGGGGAGAAACTTGATGACATTCTAGCATCCATGAATCAGGTTGCAGAGGGTGTAGCTACAGCAGGAGCTGTCATTGCTTTGGCACAGAAATATCATGTGAAGATGCCTGTGCTAACTGCAGTTGCTCGTATTATTGACAATGAACTGACACCAAAGAGAGCTGTTTTAGAGCTAATGAATCTTCCACAGGTCGAAGAAGTTTAGTTTGATTTTTGGATCTTCTATTTTACAAAAGATGAAAAAGTTGAACATACCTCTTCCCGACGAAGAGACCTATGGTACATTATCCTAAAGAATAGAACTTACAGTAGTAGTATTTTGAAGTGTGTCTTTTAAAACAACCTTCATTTAGGAATCAGGATATTCTTTTGGGAAATCTTATCTATAGCAAAGACAGAAAAGAACAATATAGCATGCTGTGATTATATTTTTACCGAACAAGCATATGAAATAAGAAATAAGATTCTTTCGAATTCATTTTGAACTTTTCTTTTTTAACCTTAACCAATTCAAAAATAACAATAATTGATGAATCACAATACCCTTCAAGATTAA

Fln Alignment:

Contig10096___AQVVVLGGGSFATAMAALVAQNKAEM-----EVSMLVRDDVVCKS------INGAKFNSKYLPEHKLPKNVMATTDARAALQGADFCIHAVPVQFSATILESISEHVTPKLPFVSVSKGLELNTLR--MMSQIIPQALGNPFQPVVVLSGPSFAVELMDKLPTGLMKDSYDLMPESQEQM*KLMEQLL*KPLLYLACNYAAMVAASKDKEXXXXXXXXXXXXXLRISTSSDVTGVEIAGALKNVLAIAAGIVEGMNLGNNCMAALVAQGCTEIRWLATKM--GAKATTLTGLSGTGDIMLTCFVRLSRNRTVGVRLGSG---EKLDDILASM--NQVAEGVATAGAVIALAQK--YHVKMPVLTAVARIIDNELTPKRAV
Q9SCX9_______________SKVTVVGSGNWGSVAAKLIASNALKLPSFHDEVRMWVFEEVLPNGEKLNDVINKTNENVKYLPGIKLGRNVVADPDLENAVKDANMLVFVTPHQFMDGICKKLDGKITGDVEAISLVKGMEVKKEGPCMISSLISKQLGIN---CCVLMGANIANEIAVE---------------------KFSE---------------ATVGYRGSREIADTWVQLFSTPYFMVTPVHDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMKALSKLLFPSVKDSTFFESCGVADVITTCLG--GRNRRVAEAFAKSRGKRSFDELEAEMLQGQKLQGVSTAREVYEVLKHCGWLEMFPLFSTVHQICTGRLQPEAIV

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1389	12			87	0.992554
1392		87		12	0.992554
1489	14			85	0.993533
1721	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain