SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10085

Length: 1689 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10085

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	2-hydroxyacid dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9RDX6_RICCO	-	-	8.0e-39	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Sma3	2-hydroxyacid dehydrogenase, putative	-	-	5.586e-09	-

Source	Gene names
Sma3	AT1G75180; At1g01500; At1g19400; At1g75180; F22L4.6; GSVIVT00036388001; LOC_Os03g56420; Os03g0775600; OsI_13714; OsJ_12775; POPTRDRAFT_722038; RCOM_1616510; RCOM_1675110;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	GO:0016616	Molecular Function	-
Sma3	cofactor binding	GO:0048037	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	IPR006140	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR014778	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUE2

Fln msg: your sequence is shorter than subject: 291 - 324

Fln protein: MESSEEDMAQRKLSAEKDPCLDLRVFYMRLSSCPLENTPLLLTLCYIPRDFTVGLEVNGERIAPSETASSLLRRDRVDKQSAEVTYVSTDNIRITGAMTFEVYEKDVLLVCGKLQRLNSTFEWRMDSCAGLAGSLFLGGGNTERRSWSGSAPAMEVYVAGCCSGVPVIWTNKIQLVCGRKSGSGLGVDNIPEDEKSMKLCENKEQSDRLYQLSDGSYTKDQDEMGGPGFTRFYPERGNIEEDYGEQSWFNTGIGVGVGIGIGMFVGIGLGVGLLVNTYQIATKVFRRKWL*

Protein Length: 292

Fln nts: ATCAGAACATCGATCATATTTTTGGCTTTCTTGCTCTGAGTTGCAGGAAACTTGAAACGCCATAC_-_ATGGAGTCTTCTGAAGAGGACATGGCGCAAAGAAAGCTTAGCGCGGAGAAGGATCCGTGTCTAGATCTGAGAGTATTTTATATGCGATTGAGCTCATGCCCACTTGAAAATACGCCTCTGCTTTTAACTCTGTGCTACATTCCCAGAGATTTTACTGTTGGACTTGAAGTGAATGGCGAACGCATTGCTCCTTCTGAGACGGCTTCTTCCCTGCTGCGAAGGGACAGAGTTGATAAGCAATCCGCAGAAGTTACTTATGTTAGTACAGATAATATTCGCATAACAGGAGCCATGACATTTGAAGTTTATGAGAAGGATGTCTTGTTGGTCTGTGGAAAGCTGCAAAGATTGAATAGTACCTTCGAATGGAGGATGGATAGCTGTGCAGGATTGGCGGGCTCTCTGTTCTTGGGAGGAGGAAACACTGAGCGGAGATCTTGGAGTGGTTCTGCCCCTGCCATGGAGGTATATGTTGCTGGTTGTTGTTCCGGGGTTCCTGTGATTTGGACTAATAAAATCCAGCTGGTTTGCGGTAGAAAGTCTGGGAGCGGCCTGGGTGTTGATAACATTCCAGAGGATGAGAAAAGCATGAAACTCTGTGAGAACAAAGAACAGAGTGATCGATTGTATCAGCTATCTGATGGCAGTTACACAAAAGACCAAGATGAAATGGGTGGACCTGGTTTTACTAGGTTTTATCCAGAAAGGGGAAACATTGAAGAAGATTATGGAGAGCAATCCTGGTTCAATACTGGAATTGGGGTTGGTGTCGGTATTGGCATTGGAATGTTTGTTGGCATTGGATTGGGCGTTGGATTGCTTGTAAATACATATCAAATAGCCACTAAAGTTTTCAGGAGAAAGTGGTTATAG___ATTTTTGTTGTTCGCTGTTAGTGGTAAAATTTGATTGAAATACGACTTCTGCCCGACTCAATTGTTCTCCAAGATTTTCTTATTGTATGAAGGACAGGATTAGATATATTGAGCTAACCTGTGTTCTTCTTCCAGCGAAAAGACAACCAAGCCCTTTTGAGGAAAAGCACGTAAGAGCCTGGACAGGGAGGGTTGTTGACATTCCATGGATGCAACGCTGGTGGGCGGAGAGTTTGTTGATGATGGTCCATCGCCCATGGTAGATATTTCGATAGGGCAAAAGCTCGTCGAAGTCATGAAAGTCGATGCAAGGACATCAAAACCGCAAGGCAAGAGTATCCTGATTAAGTCGATGGCAGCCACTGAAGGATGTCGATAAAATCTAAGTCAGTCATTACTGGAAGTTGAATCGCCATAACTGCTTCTTGGTTGAGATTAGGTATATGTAAAGGGGATCAAAACTACAAGAAGGCCCTCTGTTGGTTCAACCACTTCCACTCAGTACAACAAACTGCTCCAGTTCTTGACCAGTAGCTAGCTATGGTTTAGTTGTGTTGCACATCACTGGTAATACTGACTATAACTGTTCAATGTAGGCTCAATGGCTTGGTTATGCAATGCCCTAGTTGGGTTTGTCACCTATGTAATTAGGATTTTCGACATTTTATTACTCTTTCCCTATAGGTTATTTGTGATTCGTAATTATTGTGTACATATGATAGATTAGAACATTTGGTAATCAGCCAATTGC

Fln Alignment:

Contig10085___DLRVFYMRLSSCPLENTPLLLTLCYIPRDFTVGLEVNGERIAPSETASSLLRRDRVDKQSAEVTYVSTDNIRITGAMTFEV-YEKDVLLVCGKLQRLNSTFE-------WRMDSC-XXXXXXXXXXXXNTERRSWSGSAPAMEVYVAGCCSGVPVIWTNKIQLVCGRKSGSGLGVDNIPEDEKSMKLCENKE-----QSDRLYQLSDGSYTKDQDEMGGPGFTRFYPERGNIEEDYGEQSWFNTXXXXXXXXXXXXXXXXXXXXXXXXNTYQIATKVFRRK
A9NUE2_______________EVRLFYVRVSSCPLEGAPQSLTLRHHHRTVGVALEINGTRIPPAESVSLTLRRDRVDKESAEATYVSTDSVRTTGTLDFEVCYDEETLLLCGALERLEQGSDHQGVKELWGMDCCSAIGPGVCPFGKLGKQQQDFSSGPPTLEVYVAGCCGGSPIILTKTVQLVSRRKPHRRGTLDVIPEDEDETEKAQIKTIVLSGHHSHSHQISEDRDYEELDGKVESSLGSFYPEGGYIEGEDGELTWFNAGVRVGVGIGLGMCLGIGIGVGLLMRTYQATTRTFRRR

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1065		85	14		0.993533
1270		80		20	0.995493
1314		20	80		0.995493
1347	66		33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain