SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10045

Length: 1185 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10045

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative receptor protein kinase [Arabidopsis thaliana] gb\|ACN59306.1\| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gb\|AEC09344.1\| putative receptor protein kinase [Arabidopsis thaliana]	-	-	0.0	64%
FL-Next	tr=Uncharacterized protein; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	0.0	50%
Sma3	Leucine-rich repeat receptor-like protein kinase	-	-	1.093e-37	-

Source	ECs	Term	Type	e value	Identity
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	3.497e-08	-
Sma3		EC:2.7.11.3-	-	1.206e-10	-

Source	Gene names
Sma3	AT1G07550; AT1G07560; AT1G51800; AT1G51810; AT1G51820; AT1G51860; AT1G51880; AT1G51890; AT1G67720; AT2G14510; AT2G19190; AT2G28960; AT2G28970; AT2G28990; AT2G37050; AT3G21340; AT3G24550; AT3G46330; AT4G20450; AT4g20450; AT4g29990; AT4g39110; AT5G16900; AT

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	nodulation	GO:0009877	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	RNA polymerase II, heptapeptide repeat, eukaryotic	IPR000684	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Isopenicillin N synthase, conserved site	IPR002057	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G37050.3	Leucine-rich repeat protein kinase family protein chr2:15569290-15573477 FORWARD LENGTH=934	64%
RefSeq	Arabidopsis thaliana	NP_181242.3	putative receptor protein kinase [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002326166.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: I4DUG4

Fln msg: your sequence is shorter than subject: 328 - 892

Fln protein: IGFGGYGPVYYGITKDGVEVAVKVLSTDFHQGKREFLNEVSLMSRIHHLRLPVSLFGYCQDQGTNILVYEYMHNGTLREHLHGPASQEKHLDWITRLKIAEDAAKGIEYLHAGCNPNIIHRDLKSSNILLDKEMRAKVSDFGLSRMAAEGTTHVSSLVRGTVGYLDPEYYVSQQFTEKSDVYSFGVVLLEMISGREAISDEGFGVNFRNIVQWARFHIDKGDIHSIIDPALGTNFNIQSVWKIAEKAMLCVQPYGKLRPTMSDVVKEIQEAINIENEYESADEELFETMSSQSRHSSIIPNHLDSAASDLSVTLDDSFFFRVLDSCY*

Protein Length: 329

Fln nts: GATTGGATTCGGTGGCTATGGACCTGTGTACTATGGAATAACAAAAGATGGTGTGGAAGTTGCAGTTAAGGTTTTGTCAACCGATTTTCATCAAGGCAAACGAGAGTTTTTGAATGAAGTATCTCTGATGTCGAGAATACACCATCTGAGACTGCCAGTTTCTTTATTTGGATACTGCCAAGATCAAGGGACAAATATTCTTGTCTATGAATACATGCATAATGGAACTTTGCGAGAGCATCTCCATGGTCCTGCCAGTCAAGAAAAACATTTGGATTGGATCACTCGTCTCAAAATTGCTGAAGATGCGGCTAAAGGCATTGAATATCTTCATGCGGGATGCAATCCAAACATCATACACAGGGATTTGAAGAGCAGCAATATCCTCCTTGATAAGGAAATGAGGGCAAAAGTTTCTGATTTTGGGCTTTCAAGAATGGCAGCAGAAGGAACAACTCATGTATCAAGCTTAGTTCGTGGAACTGTTGGCTACTTGGATCCTGAGTACTATGTCTCTCAGCAGTTCACTGAAAAGAGTGATGTTTATAGTTTTGGAGTTGTCCTCCTGGAAATGATATCTGGTCGAGAAGCTATCTCTGATGAAGGTTTTGGTGTTAATTTCCGGAACATCGTGCAATGGGCAAGATTCCATATTGATAAAGGCGATATTCACAGTATCATAGATCCAGCTTTGGGAACTAATTTCAATATCCAGTCCGTGTGGAAAATTGCGGAGAAAGCTATGCTTTGTGTCCAACCATATGGAAAACTGCGACCAACAATGTCAGATGTGGTAAAGGAGATTCAAGAGGCAATCAACATTGAGAATGAATATGAATCCGCGGACGAAGAACTTTTTGAGACGATGTCAAGTCAGTCAAGACACTCATCAATTATCCCAAATCATCTTGATTCTGCTGCGTCTGATCTATCTGTCACTCTGGATGATTCATTTTTCTTCCGGGTGTTAGATAGTTGTTATTAG___ACTTAGAAGAGGACATCTTGCATTACTAGATCAAAAAGAAAACTGGATGCCTGTCGTGTTCTTCTATTGGGTTTGTCTGGATTTTCAACTTTGTACATTTTGTCAGTCAAAGTATCCTTCATTCAGCTTTCTTTGATGTAAACTTCTTCAAACTAAGCACTTTGGATCACAGTTTAATGCTTATGTGCATGGATTATTAG

Fln Alignment:

Contig10045___IGFGGYGPVYYGITKDGVEVAVKVLSTDFHQGKREFLNEVSLMSRIHHLRLPVSLFGYCQDQGTNILVYEYMHNGTLREHLHGPASQEKHLDWITRLKIAEDAAKGIEYLHAGCNPNIIHRDLKSSNILLDKEMRAKVSDFGLSRMAAEGTTHVSSLVRGTVGYLDPEYYVSQQFTEKSDVYSFGVVLLEMISGREAISDEGFGVNFRNIVQWARFHIDKGDIHSIIDPALGTNFNIQSVWKIAEKAMLCVQPYGKLRPTMSDVVKEIQEAINIE
I4DUG4_______________IGVGGFGSVFFG-TLSGYNVAVKILSSTSNQGQQEFQNEVTLLCRLYHKNL-VSLIGYSK-QTVEALVHEYMDCGTLKDHLHGKAKEEKPLDWNTRLNIALQAAEGLLYLHQGCNPPIIHRDIKCTNILLDARMNAKVADFGLAKLLDRSQTYVSTAVKGTIGYLDPEYFETASLTAKSDVYSFGVVLLEIISGKS---------TSENILPLARELLSCGRIADLMDSSLDGHYKLSSAWKVAEVAYACVAQKSIDRPTMSTVVEVLKETVALE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
887	90		10		0.90298
891	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain