SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10000

Length: 2097 nt

UniGene Fasta

>sp_v3.0_unigene10000
TTCCAGTAGTCCTCTGTCTTGCACCAGGAACAGCAGCAGCAGTAGGGGCAGAGGAATTAGATCTGCGAAGAAGCTAGAGCCACCACACGTTGAGATTTTGCCACCTGCTGTCCAAGTTGGAGCTGAGCCCGAGGTCGAGGCCGAGGCTGATTTGGATTTGTTTATAAGAGAAGAAGTTGCTCCTCAGAACCCGAAAATGGATGAAAAGAGTGCTGACAAATTATTAGGGGATGACGAAGGAAGCATTACACCTATTCCACAGAAGGTTCAGGTGGGAACTTCTCCAGAGTACAAGGTTGAGCGGAAGTTGGGAAAAGGTGGGTTTGGGCAGGTATATGTTGGCCGAAGGCTAAGTGGCGGCAGCGAGCGCACGGGTCCAAATGCTATGGAGGTTGCATTGAAGTTTGAGCATCGCACCAGTAAAGGCTGTAATTACGGTCCTCCTTACGAGTGGCAAGTTTACAATACACTTAATGGTAGTTATGGATTGCCTTCGGTACATTACAAAGGACATCAGAAAGATTACTATATTCTGGTAATGGATATGTTGGGGCCCAGCCTTTGGGATGTATGGAATACGTCCGGCCAAGCAATGTCTACAGAGATGGTTGCATGCATTGCTGTGGAGGCAATATCAATACTTGAGAAACTGCATTTAAAAGGATTGGATTATGGAACAGTGGGAAAAGAATTACTATATCAGTGCCATTGCTGGTGCTACGAATGGCAGTTCTTTGGTTGTTATGTCCAAGGGAACACCTTATACTAAGCAATCTTATAAAGTCAGCGATTCCTTTCCTTTCAAATGGATCAGTAAAAAGTGGAAGGAGGGATTTTATGTCACGTCAATGACAACTGCTGGGAGTCGATGGGGTGTGGTTATGTCTCGTAATGCAGGATTCTCAGATCAGGTTGTTGAACTTGATTTTCTCTATCCAAGTGAAGGCATTCATAGACGCTGGGAGAATGGTTATAGAATAACTGCAACTGCTGCAACCTGTGATCAAGCTGCTTTTATTCTGAGTGTGCCAAAGAGGAAACTAACAGATGAAACACAAGAAACACTTCGAACATCAGCTTTTCCTAGTACTCATGTTAAGGAGAAATGGTCCAAGAATCTTTATATTGCTGCAGTTTGTTATGGACGCACAGTATCCTGATCTTATTTGTTTCATCGGATGCTGTATCTCTTTTGGTAATTTGTGAAGCAATACACTGGTTAGTAATTGCATATACAAGTGGTTTAGTGCACAAGATCCTGAAAATGTGGGGATGTTAACATCCCTATTTATTTTGAAAGGTGCCATATGATCTAGTGCTAGCAACATCCTTCAGGTTTTGCGATTCTTGGAAATGGCCAAAAGAATCCATTAATATCTTCTAGTGATATTGAATGCTACAATGCTTATAGCTTATTGGGCTGGTTATTTTGCCAGTTTTCATAGGAATTCTATTTTCTATTTCTCCAGTTTTCAAGTAGGTTTTCATTATGAACATTATCAGCTGGAACTTAAGTGGTGCCACGTCTTTCAATTTTGGCTTTTTGGATTTGTAATCCTAGATCCTATATAGTTGAATCAATTTGCTTACTCTATGATTCAAGTCATTCCATGTTCTTCAGTTGTGTTTCAACCTCGTTTTTTTCAGAAGTATGCCATGGGCAAGATGTTTTCCAACTTGTTCAGTTCAATATTGGAAATTTTGCTTTTTGTGTATCAAGGACTTTTTGAGAGTATAAATATTGCTCTTAAGTTACTGGAAAAATGAACTTACCAAGTTCAGGCAGTTTATTTGGTGGAGTTTCTTCAGTTACTGGAGGACTGTTGAAGAAGCAAATAATGAGCTGCAACCTTATATCAACTATGCTTTTGTGTTTTTATACTTTTATGTTGATGTTAGCATGACATGTGACCAGATGAGAGCTAATGGCAAGGTTTTTAAACAACCTCAACTGTATGAGGTTGCTATATATGTTTCAGTAGAGATGATGAAATTTCAGAGTAATGTTTAACAAGTATGTTGGGTAGCCCAACTTGGGTTTCAATAGATGTACTTGCTGCAACATTGATTTAATATATTGTGACATTTGCAAAAAAA

Ace file of the UniGene sp_v3.0_unigene10000

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative casein kinase [Arabidopsis thaliana]	-	-	0.0	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Sma3	Casein kinase, putative	-	-	6.141e-16	-

Source	Gene names
Sma3	At2g25750; At2g25760; At3g03930; At3g03940; At3g13670; At5g18190; B1046G12.17-1; B1046G12.17-2; CHLREDRAFT_153736; CHLREDRAFT_15736; F20H23.1; F20H23.2; GSVIVT00002083001; GSVIVT00016758001; GSVIVT00024733001; GSVIVT00025476001; GSVIVT00032089001; GSVIVT0

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Translation elongation factor P/YeiP, conserved site	IPR013852	-	-
Sma3		IPR015706	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G03940.1	Protein kinase family protein chr3:1014412-1018244 REVERSE LENGTH=701	88%
RefSeq	Arabidopsis thaliana	NP_187044.1	protein kinase-like protein [Arabidopsis thaliana]	88%
RefSeq	Populus trichocarpa	XP_002325416.1	predicted protein [Populus trichocarpa]	89%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A809

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 163 - 260

Fln protein: MEQWEKNYYISAIAGATNGSSLVVMSKGTPYTKQSYKVSDSFPFKWISKKWKEGFYVTSMTTAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWENGYRITATAATCDQAAFILSVPKRKLTDETQETLRTSAFPSTHVKEKWSKNLYIAAVCYGRTVS*

Protein Length: 164

Fln nts: TTCCAGTAGTCCTCTGTCTTGCACCAGGAACAGCAGCAGCAGTAGGGGCAGAGGAATTAGATCTGCGAAGAAGCTAGAGCCACCACACGTTGAGATTTTGCCACCTGCTGTCCAAGTTGGAGCTGAGCCCGAGGTCGAGGCCGAGGCTGATTTGGATTTGTTTATAAGAGAAGAAGTTGCTCCTCAGAACCCGAAAATGGATGAAAAGAGTGCTGACAAATTATTAGGGGATGACGAAGGAAGCATTACACCTATTCCACAGAAGGTTCAGGTGGGAACTTCTCCAGAGTACAAGGTTGAGCGGAAGTTGGGAAAAGGTGGGTTTGGGCAGGTATATGTTGGCCGAAGGCTAAGTGGCGGCAGCGAGCGCACGGGTCCAAATGCTATGGAGGTTGCATTGAAGTTTGAGCATCGCACCAGTAAAGGCTGTAATTACGGTCCTCCTTACGAGTGGCAAGTTTACAATACACTTAATGGTAGTTATGGATTGCCTTCGGTACATTACAAAGGACATCAGAAAGATTACTATATTCTGGTAATGGATATGTTGGGGCCCAGCCTTTGGGATGTATGGAATACGTCCGGCCAAGCAATGTCTACAGAGATGGTTGCATGCATTGCTGTGGAGGCAATATCAATACTTGAGAAACTGCATTTAAAAGGATTGGATT_-_ATGGAACAGTGGGAAAAGAATTACTATATCAGTGCCATTGCTGGTGCTACGAATGGCAGTTCTTTGGTTGTTATGTCCAAGGGAACACCTTATACTAAGCAATCTTATAAAGTCAGCGATTCCTTTCCTTTCAAATGGATCAGTAAAAAGTGGAAGGAGGGATTTTATGTCACGTCAATGACAACTGCTGGGAGTCGATGGGGTGTGGTTATGTCTCGTAATGCAGGATTCTCAGATCAGGTTGTTGAACTTGATTTTCTCTATCCAAGTGAAGGCATTCATAGACGCTGGGAGAATGGTTATAGAATAACTGCAACTGCTGCAACCTGTGATCAAGCTGCTTTTATTCTGAGTGTGCCAAAGAGGAAACTAACAGATGAAACACAAGAAACACTTCGAACATCAGCTTTTCCTAGTACTCATGTTAAGGAGAAATGGTCCAAGAATCTTTATATTGCTGCAGTTTGTTATGGACGCACAGTATCCTGATCTTATTTGTTTCATCGGATGCTGTATCTCTTTTGGTAATTTGTGAAGCAATACACTGGTTAGTAATTGCATATACAAGTGGTTTAGTGCACAAGATCCTGAAAATGTGGGGATGTTAACATCCCTATTTATTTTGAAAGGTGCCATATGATCTAGTGCTAGCAACATCCTTCAGGTTTTGCGATTCTTGGAAATGGCCAAAAGAATCCATTAATATCTTCTAGTGATATTGAATGCTACAATGCTTATAGCTTATTGGGCTGGTTATTTTGCCAGTTTTCATAGGAATTCTATTTTCTATTTCTCCAGTTTTCAAGTAGGTTTTCATTATGAACATTATCAGCTGGAACTTAAGTGGTGCCACGTCTTTCAATTTTGGCTTTTTGGATTTGTAATCCTAGATCCTATATAGTTGAATCAATTTGCTTACTCTATGATTCAAGTCATTCCATGTTCTTCAGTTGTGTTTCAACCTCGTTTTTTTCAGAAGTATGCCATGGGCAAGATGTTTTCCAACTTGTTCAGTTCAATATTGGAAATTTTGCTTTTTGTGTATCAAGGACTTTTTGAGAGTATAAATATTGCTCTTAAGTTACTGGAAAAATGAACTTACCAAGTTCAGGCAGTTTATTTGGTGGAGTTTCTTCAGTTACTGGAGGACTGTTGAAGAAGCAAATAATGAGCTGCAACCTTATATCAACTATGCTTTTGTGTTTTTATACTTTTATGTTGATGTTAGCATGACATGTGACCAGATGAGAGCTAATGGCAAGGTTTTTAAACAACCTCAACTGTATGAGGTTGCTATATATGTTTCAGTAGAGATGATGAAATTTCAGAGTAATGTTTAACAAGTATGTTGGGTAGCCCAACTTGGGTTTCAATAGATGTACTTGCTGCAACATTGATTTAATATATTGTGACATTTGCAAAAAAA

Fln Alignment:

Contig10000___KDWIMEQWEKNYYISAIAGATNGSSLVVMSKGTPYTKQSYKVSDSFPFKWISKKWKEGFYVTSMTTAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWENGYRITATAATCDQAAFILSVPKRKLTDETQETLRTSAFPSTHVKEKWSKNLYIAAVCYGRTVS
D5A809_______________KDWIMEQWEKNFYISAIAGATNGSSLVVMSKGTPYTQQSYKVSDSFPFKWISKKWKEGFYVTSMTTAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWENGYRITATAATCDQAAFILSVPKRKLTDETQETLRTSAFPSTHVKEKWSKNLYIAAVCYGRTVS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
2072		11		88	0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
31	42	CAG CAG CAG CAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain