SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9996

Length: 2280 nt

UniGene Fasta

>sp_v3.0_unigene9996
ATGGGGGATCATATCTATAAGTTAACTCACACTCTTTACATATTTTCAAGAATCCAGGTTGCGCAAGGCTCTTGTTTCTCCTCTATTTCCTACAATTTCATTTCAAATTCTGCGCCAAGTTCAGTATTCAATTAATGTTCACTCCCTGTTGATTATATCTCCGGAAGCCTTTATTGGGTTTACTGAGGCTTTGAGTTTATTTTCAATAAGTCAGGTTGCCTAAGGCTCTTATTTCTGCTCTATTTCCTGCAATTCATTTCAAATTCTGCGTCAAGTTTCCTCCCTGTTGATCGATCTCCCTGAGCCTTTACTGGGTTTACTGGGGCTTTTGAGAGCTTCGACCGCGAAAGATGTCGCTGAGGCCGAATGGGAGGATGGAAGCCCGGAGAAAGATGGGCTACAAGACGGCCATGAACAGAGAGGAGGCACGCAGGAGGCGAGAAGACGACATGGTCGAGATCCGGAAGAACAAAAGGGATGAGGGTTTGCTTAAGAAACGCCGGGAAGGGGGGTTCCCTGCCCCGCCAACCTCTGCTGAGATCCCCATGCAAAACCAGTGCGACTCTATCTCATCGTCGGCAATCGCAATTACGTCTGAAGATCCAATAAAACAGCTAGATGCTACTACCCAGTTTCGGAAATTCCTGTCCATTGAGATTAATCCTCCAATTGATGCCGTAATCAGAACAGGAATTCTTCCTTACCTCGTTAATTTCCTGCGAAGGGCAGACACACCAAAGCTTCAGTTTGAGGCAGCTTGGGCTTTAACGAATATCGCATCAGGAACAACAGAACACACTAGTGCTGTGATTGAGCATGGTGCAGTTCCTCTTTTTGTCCAACTTCTTTGTTCTCCTAATGATGAAGTGCAGGAGCAGGCTGTTTGGGCTCTGGGAAATATTGCGGGAGATTCTCCTAAGTGCAGGGATCTTGTTCTCAGTCATGGAGCTATGATGAATCTACTTGCTCTATTTCATGAACATACTAAACTTTCCATGCTGAAGAATGCCACATGGACACTGTCAAACTTTTGTCGTGGCAAACCGTCTCCTCCTTTTGAGCAGGTAAAAGTTGCCCTTCCAATTTTGGAGAAGCTTATTCAATTAGATGATGAGGAAATACTGGCAGATGCTTGCTGGGCTCTTTCGTATATTTCTGATGGAAATGAAGAGAACATTCAGGCTGTTATTGAAGCTCGTGTTTGTGAAAAGCTTGTGGATCTTTTACTTCATTCTTTACGAGTTCTCACTCCTGCATTAAGAACTATTGGCAATATTGTGACTGGCAATGATGTGCAAACTCAGCATGTCATCAACAGTCATGCTCTTCCATTTCTCTTGTCACTTATCACAAACAGTCCCCAAAAAAACATTAAAAAGGAAGCTGTCTGGGCAATCTCCAATATCACAGCAGGAACCAAGGATCAAATTCAGGCTGTTATCGATGCAAACGTGATTCCTCAGCTTATATTATTGTTAGTAACGGCAGACTTCGAAATAAAGAAAGAGGCAGCTTGGGCCATTTCTAATGCTGTTTCAGGCGGAACCCACGAGCAGATCAAATACTTGGTCAATCGTGGTTGCATAAAGCCCCTATGTGATCTTCTTGAATGTTCGGACACAAGGATTTTAACTGTTTGCCTTGAAGGCCTTGAGAATATTTTGAAGGCTGGGGATGATGGAAGTCATGGAAATAATAAGTATGCAATCTTTATTGAGTATGCTGATGGATTGGATAAAATTGAGGCACTACAGATGCATGAAAATAATGATATATATGAAAAAGCTGTTCGGATCCTTGAAACTTACCTAGCCGGTACTGATGAAGATGAAGAACAACCTTTGGCTAATGGAGATGATAACGGAGAATTTTCTTTGGCTGCAAATCAACCTTCCATTTCTTCCCGTCCCTTTAATTTCAGTTGAATATTTTGAAGATCATGTTTTTCCCCTTGGGTTGTGAATTTGCTTAACCTATTTCGCTAGTTCTATATGGTTTTGAATTTTCGTTGGCAGTATCCTTTTCATGTGTTTGTTGATATCGCAGAGTCAGGTTCAAGGTCCTCAAGTCACTTGTTGAGGATTGAATTCAGCGTGTATATTTTCCATGTTGAGGATTGAATTTAGTTTGTATATATGGTATTTTTATTCTGTCCTCCTGATGCCATATTTTACAGACCTGTGGAAGATACTATTTTTGTTACTGGTTACAGACAATCCGTATTGAGCTTGTTATTAAACATAATAGTGAAAGTTTTAGTTCGTATAAAGTTCGGGAGAC

Ace file of the UniGene sp_v3.0_unigene9996

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Importin subunit alpha-1 [Arabidopsis thaliana] ref\|NP_850524.1\| Importin subunit alpha-1 [Arabidopsis thaliana] sp\|Q96321.2\|IMA1_ARATH RecName: Full=Importin subunit alpha-1; AltName: Full=Karyopherin subunit alpha-1; Short=KAP-alpha-1 gb\|AAC27644.1\| imp	-	-	0.0	58%
FL-Next	sp=Importin subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	61%
Sma3	Importin alpha, putative	-	-	5.68e-22	-

Source	Gene names
Sma3	AT1G09270; At1g02690; At1g09270; At1g32880; At3g05720; At3g06720; At4g02150; At5g49310; At5g52000; B1045F02.27; BIMPa; CHLREDRAFT_139246; F18C1.1; F3E22.14; GSVIVT00009657001; GSVIVT00022582001; GSVIVT00022647001; GSVIVT00028070001; GSVIVT00033097001; IPA

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nuclear pore	GO:0005643	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	enzyme inhibitor activity	GO:0004857	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	protein transporter activity	GO:0008565	Molecular Function	-
Sma3	pectinesterase activity	GO:0030599	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein import into nucleus	GO:0006606	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	symbiont intracellular protein transport in host	GO:0030581	Biological Process	-
Sma3	induction by symbiont in host of tumor, nodule, or growth	GO:0044005	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	Importin-alpha, importin-beta-binding domain	IPR002652	-	-
Sma3	AUX/IAA protein	IPR003311	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G06720.1	AT-IMP, ATKAP ALPHA, AIMP ALPHA, IMPA-1, IMPA1 importin alpha isoform 1 chr3:2120559-2123555 FORWARD LENGTH=532	61%
RefSeq	Arabidopsis thaliana	NP_850524.1	Importin subunit alpha-1 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002318966.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q96321

Fln msg:

Fln protein: MSLRPNGRMEARRKMGYKTAMNREEARRRREDDMVEIRKNKRDEGLLKKRREGGFPAPPTSAEIPMQNQCDSISSSAIAITSEDPIKQLDATTQFRKFLSIEINPPIDAVIRTGILPYLVNFLRRADTPKLQFEAAWALTNIASGTTEHTSAVIEHGAVPLFVQLLCSPNDEVQEQAVWALGNIAGDSPKCRDLVLSHGAMMNLLALFHEHTKLSMLKNATWTLSNFCRGKPSPPFEQVKVALPILEKLIQLDDEEILADACWALSYISDGNEENIQAVIEARVCEKLVDLLLHSLRVLTPALRTIGNIVTGNDVQTQHVINSHALPFLLSLITNSPQKNIKKEAVWAISNITAGTKDQIQAVIDANVIPQLILLLVTADFEIKKEAAWAISNAVSGGTHEQIKYLVNRGCIKPLCDLLECSDTRILTVCLEGLENILKAGDDGSHGNNKYAIFIEYADGLDKIEALQMHENNDIYEKAVRILETYLAGTDEDEEQPLANGDDNGEFSLAANQPSISSRPFNFS*

Protein Length: 526

Fln nts: ATGGGGGATCATATCTATAAGTTAACTCACACTCTTTACATATTTTCAAGAATCCAGGTTGCGCAAGGCTCTTGTTTCTCCTCTATTTCCTACAATTTCATTTCAAATTCTGCGCCAAGTTCAGTATTCAATTAATGTTCACTCCCTGTTGATTATATCTCCGGAAGCCTTTATTGGGTTTACTGAGGCTTTGAGTTTATTTTCAATAAGTCAGGTTGCCTAAGGCTCTTATTTCTGCTCTATTTCCTGCAATTCATTTCAAATTCTGCGTCAAGTTTCCTCCCTGTTGATCGATCTCCCTGAGCCTTTACTGGGTTTACTGGGGCTTTTGAGAGCTTCGACCGCGAAAG_-_ATGTCGCTGAGGCCGAATGGGAGGATGGAAGCCCGGAGAAAGATGGGCTACAAGACGGCCATGAACAGAGAGGAGGCACGCAGGAGGCGAGAAGACGACATGGTCGAGATCCGGAAGAACAAAAGGGATGAGGGTTTGCTTAAGAAACGCCGGGAAGGGGGGTTCCCTGCCCCGCCAACCTCTGCTGAGATCCCCATGCAAAACCAGTGCGACTCTATCTCATCGTCGGCAATCGCAATTACGTCTGAAGATCCAATAAAACAGCTAGATGCTACTACCCAGTTTCGGAAATTCCTGTCCATTGAGATTAATCCTCCAATTGATGCCGTAATCAGAACAGGAATTCTTCCTTACCTCGTTAATTTCCTGCGAAGGGCAGACACACCAAAGCTTCAGTTTGAGGCAGCTTGGGCTTTAACGAATATCGCATCAGGAACAACAGAACACACTAGTGCTGTGATTGAGCATGGTGCAGTTCCTCTTTTTGTCCAACTTCTTTGTTCTCCTAATGATGAAGTGCAGGAGCAGGCTGTTTGGGCTCTGGGAAATATTGCGGGAGATTCTCCTAAGTGCAGGGATCTTGTTCTCAGTCATGGAGCTATGATGAATCTACTTGCTCTATTTCATGAACATACTAAACTTTCCATGCTGAAGAATGCCACATGGACACTGTCAAACTTTTGTCGTGGCAAACCGTCTCCTCCTTTTGAGCAGGTAAAAGTTGCCCTTCCAATTTTGGAGAAGCTTATTCAATTAGATGATGAGGAAATACTGGCAGATGCTTGCTGGGCTCTTTCGTATATTTCTGATGGAAATGAAGAGAACATTCAGGCTGTTATTGAAGCTCGTGTTTGTGAAAAGCTTGTGGATCTTTTACTTCATTCTTTACGAGTTCTCACTCCTGCATTAAGAACTATTGGCAATATTGTGACTGGCAATGATGTGCAAACTCAGCATGTCATCAACAGTCATGCTCTTCCATTTCTCTTGTCACTTATCACAAACAGTCCCCAAAAAAACATTAAAAAGGAAGCTGTCTGGGCAATCTCCAATATCACAGCAGGAACCAAGGATCAAATTCAGGCTGTTATCGATGCAAACGTGATTCCTCAGCTTATATTATTGTTAGTAACGGCAGACTTCGAAATAAAGAAAGAGGCAGCTTGGGCCATTTCTAATGCTGTTTCAGGCGGAACCCACGAGCAGATCAAATACTTGGTCAATCGTGGTTGCATAAAGCCCCTATGTGATCTTCTTGAATGTTCGGACACAAGGATTTTAACTGTTTGCCTTGAAGGCCTTGAGAATATTTTGAAGGCTGGGGATGATGGAAGTCATGGAAATAATAAGTATGCAATCTTTATTGAGTATGCTGATGGATTGGATAAAATTGAGGCACTACAGATGCATGAAAATAATGATATATATGAAAAAGCTGTTCGGATCCTTGAAACTTACCTAGCCGGTACTGATGAAGATGAAGAACAACCTTTGGCTAATGGAGATGATAACGGAGAATTTTCTTTGGCTGCAAATCAACCTTCCATTTCTTCCCGTCCCTTTAATTTCAGTTGA___ATATTTTGAAGATCATGTTTTTCCCCTTGGGTTGTGAATTTGCTTAACCTATTTCGCTAGTTCTATATGGTTTTGAATTTTCGTTGGCAGTATCCTTTTCATGTGTTTGTTGATATCGCAGAGTCAGGTTCAAGGTCCTCAAGTCACTTGTTGAGGATTGAATTCAGCGTGTATATTTTCCATGTTGAGGATTGAATTTAGTTTGTATATATGGTATTTTTATTCTGTCCTCCTGATGCCATATTTTACAGACCTGTGGAAGATACTATTTTTGTTACTGGTTACAGACAATCCGTATTGAGCTTGTTATTAAACATAATAGTGAAAGTTTTAGTTCGTATAAAGTTCGGGAGAC

Fln Alignment:

Contig9996___MSLRPNGRMEARRKMGYKTAMNXXXXXXXXXDDMVEIRKNKRDEGLLKKRREG-----GFPAPPTSAEIPMQNQCDXXXXXXXXXXXEDPIKQLDATTQFRKFLSIEINPPIDAVIRTGILPYLVNFLRRADTPKLQFEAAWALTNIASGTTEHTSAVIEHGAVPLFVQLLCSPNDEVQEQAVWALGNIAGDSPKCRDLVLSHGAMMNLLALFHEHTKLSMLKNATWTLSNFCRGKPSPPFEQVKVALPILEKLIQLDDEEILADACWALSYISDGNEENIQAVIEARVCEK-XXXXXXXXXXXXTPALRTIGNIVTGNDVQTQHVINSHALPFLLSLITNSPQKNIKKEAVWAISNITAGTKDQIQAVIDANVIPQLILLLVTADFEIKKEAAWAISNAVSGGTHEQIKYLVNRGCIKPLCDLLECSDTRILTVCLEGLENILKAGDD----GSHGN-NKYAIFIEYADGLDKIEALQMHENNDIYEKAVRILETYLAGTDEDEEQ--PLANGDDNGEFSLAANQPSISSRPFNFS
Q96321______________MSLRPNAKTEVRRNR-YKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFPSASAAS---VDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPRFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQVKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPSVLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNKDQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDDETQQPPGVDGSQAG-FQFGGNQAPVPSGGFNFS

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
208	66			33	0.997452
463	20	80			0.995493
590	80	20			0.995493
731			83	16	0.994512
732	83		16		0.994512
733		83	16		0.994512
734	83		16		0.994512
787	85		14		0.993533
1014		85		14	0.993533
1015	85		14		0.993533
1016			14	85	0.993533
1046		85		14	0.993533
1047		85	14		0.993533
1049			14	85	0.993533
1096		12	87		0.992554
1241		90		10	0.90298
1288		88		11	0.923564
1303		44		55	1.0
1680	90		10		0.90298
1681			10	90	0.90298
1907		85		14	0.993533
1910	14	85			0.993533
1915			14	85	0.993533
1916	85		14		0.993533
1917	85	14			0.993533
1919			14	85	0.993533
1923		14	85		0.993533
1927	85	14			0.993533
1980		10		90	0.90298
2142		16	83		0.999991
2183	12			87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain