SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9893

Length: 2344 nt

UniGene Fasta

>sp_v3.0_unigene9893
CGTCGTGACCTTGGCTGTCACTCAATAAATTGTCTCCACAAAGATTTAGTACGGGACTTGAACTCGTATTTGCCTCAAATTGTTGAACTCTCGAGGGTTTTACAAGGGTTTCTGCTTCCATTGTCTGCAATAGGAGATTGAACTTCCAGTTTCTGCAATAGGAGATTGAACCCGCGTCATATTTTTCTGGAAATCACTGAAATGGCAGAGGTAAAGGCTGTCAAAACCGAGGAAGGGGCCAATCAAAAGACAGGTCAACCCCCTAGAGTAAGAGGTTCAGAAGTTTTTGTTGGTGGCCTTGCACAAAACTGTGACTGAAGACATGATTCGTGAGATATTCTCATCCTGTGGTGAGGTTGTAGAGATACGCATGATGAAAGACCCGAATGGAGCTTTGAAGGGATATTGTTTTGTTCGCTTTGCTACAAAGGAAGCTGCCGTGAAAGCTCAGCAGGAAAAGAGTAATATAACATTGCAAGGCAAAAAGATTGGGGTTTCTCCATCCTCAGACAAGGACACACTTTTTCTAGGGAATCTTCGCAAGGATTGGGGGCATGAAGAGGTGGAATCAATGGTTCGTCAAGCTTTTCAGGATGTTGTATCTGTAGTGCTAGCTATGCCTCCAAGAACTGGAGAATCCCCTCAAGACAAGAAGAAACAGAATCGAGGATTTGCTTTTGTTCACTTTGCATCACATGCGGCTGCAGCTCGTGCACATCGAGTAGGAACCAAACAAGACTTTATGCTTGGAGGTAAATGGCGTCTCCTAGTGGACTGGGCTGAAAGTGATCCAGAGCTTGATCCCGACGAAATGGCAAAGGTAAAAGTGGCATTTGTAGGAAATCTTCCAGAGAATACCAGTGAGGACTTCTTAAGAAAACTTTTTGAACCTTTTGGGAAGTTGGAGAGAGTTGCGATATCTAGAAAGAGTAATATGCCTGTGGGGTTCGTCCACTTTAGCGAACGATATGAATTGGATAAGGCAATAAAAGAGCTGGATGACAAAACAATTGAGGGACCAGACAAAAGCCCAAAGTTTAAGATACAGGTCACAGTTGCAAAGCCTGCAGATAAGGCTAAGAAGCGTAGTCGTGAGGAATCCCAGAAGTTGACGGCTAATAAATCTGATGGTCAAGCAAAGAAATCCACAGATATTACATCTTACAAAGCACTGGGTTACCCCAATATGCATGCAAAAGTTCCCCGTCTTGATGCCAAGCCTATAGAGGTTCCAACTGTAGCAGATCCATACGAAGTGGCTGTCCTTTCATTGCCTACTTCTGTTACAGATCGTTTGCTCCGGATATTTCGCCAAGGTCTTGCTACTCGATATGATATTGACATTCAATGCCTTACAAGTTTGCGGGAGCTTCCTGAAGTGACAGCTGCAGCTATCCTTGAGCAGTTTGCAACAAACAACTTTGCAGATGGGCGCAACAAGAGTGCATACCTTGCTGGTTTGATTGCAAGGTATAAAGTGGACAGCTTAGCAAGTGGGAGAATCCCAATGCTACATCAAGGACAAAGTTCAAATCTGCCATCCAGAGATGCTGGGCTACTTGGGATAACCGGAACAAACAATCCCTCTTTACTAGATCCTCTAGTTGCATCTCATCCTCTCCCAGGATCAGCTTTACTTCGGCATGGTCCTTACGCTGCAGCTACATCATTGGGTGGCCTTTCACAAGTGCCACCACTATTGACTGGAGATTCTCTTTTGGAAAGGATGCCAACTAGGCTAGATCATAGTCTCTCATCTTATAGAGCTCCAGCAAGCACTGGTTCTAACCTGGGGTCTGGCCTACCAGAAGCAAGCGTTACAGAAAGGCGACCACCAGTAAAGTTTGATCCCTTCACTGGTCAACCTTACAAGTTTGATCCTTTCACTGGAGAGCCTATCCAGCAGCCAGGACCTGTATCTGTGCCGTCTTCCCATTTTACTGGGAAGTATTACTGAAAAAATCAATGTTAGTGGAATAGATTTATGTTTCATTATATAAAGTGCCGATCGATTTGGTTCTTCACATCACTGCATCCCTTCTCGTGGAATCACTAATACATGTCCTATCATTTTCTATTTCGTAGAACATTATACTGTACTTGTTTGGATTGTCTCAGATCACATTTTCTTGCCTATTTGCTGTTTCTGAAGAATGCTGAGGTCTAGTATTTTATTATTTTGTATTAAAGTGGCATGTGGAGTTGTGGACAGTCATTTAACATTGAGATGGTGCAGTGGTTTCCTTTTCTGGCATCTGATTTTTTGGGAGTAAGTAACCCCTTCTGTTCTAATATTTGCTAAATTATGGTCCTCTAATCATGACGTGCAATGTAACCTTTCCTT

Ace file of the UniGene sp_v3.0_unigene9893

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	heterogeneous nuclear ribonucleoprotein r [Aedes aegypti] gb\|EAT45899.1\| heterogeneous nuclear ribonucleoprotein r [Aedes aegypti]	-	-	1.0e-27	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%

Source	Gene names
Sma3	GSVIVT00038011001; OsI_38856; VITISV_022646;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	0.0	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Xklp2 targeting protein	IPR009675	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAK1

Fln msg: your sequence is longer than subject: 545 - 78

Fln protein: MIREIFSSCGEVVEIRMMKDPNGALKGYCFVRFATKEAAVKAQQEKSNITLQGKKIGVSPSSDKDTLFLGNLRKDWGHEEVESMVRQAFQDVVSVVLAMPPRTGESPQDKKKQNRGFAFVHFASHAAAARAHRVGTKQDFMLGGKWRLLVDWAESDPELDPDEMAKVKVAFVGNLPENTSEDFLRKLFEPFGKLERVAISRKSNMPVGFVHFSERYELDKAIKELDDKTIEGPDKSPKFKIQVTVAKPADKAKKRSREESQKLTANKSDGQAKKSTDITSYKALGYPNMHAKVPRLDAKPIEVPTVADPYEVAVLSLPTSVTDRLLRIFRQGLATRYDIDIQCLTSLRELPEVTAAAILEQFATNNFADGRNKSAYLAGLIARYKVDSLASGRIPMLHQGQSSNLPSRDAGLLGITGTNNPSLLDPLVASHPLPGSALLRHGPYAAATSLGGLSQVPPLLTGDSLLERMPTRLDHSLSSYRAPASTGSNLGSGLPEASVTERRPPVKFDPFTGQPYKFDPFTGEPIQQPGPVSVPSSHFTGKYY*

Protein Length: 546

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAAATTGTCTCCACAAAGATTTAGTACGGGACTTGAACTCGTATTTGCCTCAAATTGTTGAACTCTCGAGGGTTTTACAAGGGTTTCTGCTTCCATTGTCTGCAATAGGAGATTGAACTTCCAGTTTCTGCAATAGGAGATTGAACCCGCGTCATATTTTTCTGGAAATCACTGAAATGGCAGAGGTAAAGGCTGTCAAAACCGAGGAAGGGGCCAATCAAAAGACAGGTCAACCCCCTAGAGTAAGAGGTTCAGAAGTTTTTGTTGGTGGCCTTGCACAAAACTGTGACTGAAGAC_-_ATGATTCGTGAGATATTCTCATCCTGTGGTGAGGTTGTAGAGATACGCATGATGAAAGACCCGAATGGAGCTTTGAAGGGATATTGTTTTGTTCGCTTTGCTACAAAGGAAGCTGCCGTGAAAGCTCAGCAGGAAAAGAGTAATATAACATTGCAAGGCAAAAAGATTGGGGTTTCTCCATCCTCAGACAAGGACACACTTTTTCTAGGGAATCTTCGCAAGGATTGGGGGCATGAAGAGGTGGAATCAATGGTTCGTCAAGCTTTTCAGGATGTTGTATCTGTAGTGCTAGCTATGCCTCCAAGAACTGGAGAATCCCCTCAAGACAAGAAGAAACAGAATCGAGGATTTGCTTTTGTTCACTTTGCATCACATGCGGCTGCAGCTCGTGCACATCGAGTAGGAACCAAACAAGACTTTATGCTTGGAGGTAAATGGCGTCTCCTAGTGGACTGGGCTGAAAGTGATCCAGAGCTTGATCCCGACGAAATGGCAAAGGTAAAAGTGGCATTTGTAGGAAATCTTCCAGAGAATACCAGTGAGGACTTCTTAAGAAAACTTTTTGAACCTTTTGGGAAGTTGGAGAGAGTTGCGATATCTAGAAAGAGTAATATGCCTGTGGGGTTCGTCCACTTTAGCGAACGATATGAATTGGATAAGGCAATAAAAGAGCTGGATGACAAAACAATTGAGGGACCAGACAAAAGCCCAAAGTTTAAGATACAGGTCACAGTTGCAAAGCCTGCAGATAAGGCTAAGAAGCGTAGTCGTGAGGAATCCCAGAAGTTGACGGCTAATAAATCTGATGGTCAAGCAAAGAAATCCACAGATATTACATCTTACAAAGCACTGGGTTACCCCAATATGCATGCAAAAGTTCCCCGTCTTGATGCCAAGCCTATAGAGGTTCCAACTGTAGCAGATCCATACGAAGTGGCTGTCCTTTCATTGCCTACTTCTGTTACAGATCGTTTGCTCCGGATATTTCGCCAAGGTCTTGCTACTCGATATGATATTGACATTCAATGCCTTACAAGTTTGCGGGAGCTTCCTGAAGTGACAGCTGCAGCTATCCTTGAGCAGTTTGCAACAAACAACTTTGCAGATGGGCGCAACAAGAGTGCATACCTTGCTGGTTTGATTGCAAGGTATAAAGTGGACAGCTTAGCAAGTGGGAGAATCCCAATGCTACATCAAGGACAAAGTTCAAATCTGCCATCCAGAGATGCTGGGCTACTTGGGATAACCGGAACAAACAATCCCTCTTTACTAGATCCTCTAGTTGCATCTCATCCTCTCCCAGGATCAGCTTTACTTCGGCATGGTCCTTACGCTGCAGCTACATCATTGGGTGGCCTTTCACAAGTGCCACCACTATTGACTGGAGATTCTCTTTTGGAAAGGATGCCAACTAGGCTAGATCATAGTCTCTCATCTTATAGAGCTCCAGCAAGCACTGGTTCTAACCTGGGGTCTGGCCTACCAGAAGCAAGCGTTACAGAAAGGCGACCACCAGTAAAGTTTGATCCCTTCACTGGTCAACCTTACAAGTTTGATCCTTTCACTGGAGAGCCTATCCAGCAGCCAGGACCTGTATCTGTGCCGTCTTCCCATTTTACTGGGAAGTATTACTGA___AAAAATCAATGTTAGTGGAATAGATTTATGTTTCATTATATAAAGTGCCGATCGATTTGGTTCTTCACATCACTGCATCCCTTCTCGTGGAATCACTAATACATGTCCTATCATTTTCTATTTCGTAGAACATTATACTGTACTTGTTTGGATTGTCTCAGATCACATTTTCTTGCCTATTTGCTGTTTCTGAAGAATGCTGAGGTCTAGTATTTTATTATTTTGTATTAAAGTGGCATGTGGAGTTGTGGACAGTCATTTAACATTGAGATGGTGCAGTGGTTTCCTTTTCTGGCATCTGATTTTTTGGGAGTAAGTAACCCCTTCTGTTCTAATATTTGCTAAATTATGGTCCTCTAATCATGACGTGCAATGTAACCTTTCCTT

Fln Alignment:

Contig9893___MPTRLD--HSLSSYRAPASTGSNLGSGLPEASVTERRPPVKFDPFTGQPYKFDPFTGEPIQQPGPVSVPSSHFTGKYY
D5AAK1______________MPTRLDDVHSLSSYRAPASNGFNLGSGLPEASVTERRPPIKFDPFTGQPFKFDPFTGEPIQQPGPVSLPSSHFTGKYY

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
640		85	14		0.993533
857	85		14		0.993533
858		85	14		0.993533
860	85		14		0.993533
905			87	12	0.992554
908	87			12	0.992554
909			87	12	0.992554
910	87			12	0.992554
913		12		87	0.992554
915		87		12	0.992554
916	12		87		0.992554
917	87			12	0.992554
1119	90		10		0.90298
1510	12		87		0.992554
1711		15		84	0.999986
2044	15		84		1.0
2046			84	15	1.0
2221	28	71			1.0
2300		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain