SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9876

Length: 3404 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene9876
TAAACAGGCCGACTTTCCCAGGTCCTCAATTCCTGAATCCGGTGATTCCACTAAATCTAATTTATTCAACGACCACAAATCGCCTCGTTTCATGCCATGCCGGGCCCGGTCTCTGTCAAAAATCCACCTCCGTAATACCACTCGGATTCGAGCCCCGCACCTTGTGGTAATGCCTTCTTAGAACCTGACAGTCTCTTTGTAAAATGAACAGCGTGTCTTGGACTGAAAGGGACCGTGGATCTCGCCTGTACTTCTTGGATCCGCTCGCAAGAAATATTAAAATTTGTCAAAGATAACGATTTATATGTACTCCCATGAATCGTGGCACGACTGCTGGGATCTTTACAGAGGATGGATATATGAATTTTCGCTCAGAGGACTTGGGATTGAAATCCGTATTTCGCAATTATTCAGACTACAGGATTGAAGATATTGGACTTCGTGTTGGAGCCCGCAATTGGCAATTATTCAGGTCGTTTTGGAAAATTTCCCTTTCAGAACCGCGGCTTGTTAGACTTGTATTAATCTCTGATTAAGATCAGCTTCAAGACGGGACTTGTAGACCAGCAGCATCTGAAGGCTTGCCAATGGAATTATTAAATACATCAAGGCATTAACTCAAGCATCTCTGAACTAAATACAAGCCGATTCATCACCCATTCTGTTCAAATTCAGAGCATACAAACTGACGAAAGTTCGGATATGATAGAAAGCCACACTGAATTGCTGAAAATTTCATATAATTCAGCGACGAGGATGGTTTTGCGAAGAATTTAATTTGGGTTAGACTGGCATAACCCACGAGGCCAATAGATGAAAAGCTCATGCTCACAGAGATATATGGCGTAATATGCCGACGCAATATAGTTCTGCAAGGTACAAGACCCGAGACATTGAAGGGGAAGGATTATTTTAATATCGCGAGTACAAATGGTTCGAACAGAAGATAAGGCCTGTTTTGATCAGTTGAGAGCGCAAAAGTTTCTGACCTAATACTACTCAGAGAGCTCGCGGTGAAGATTTGCTATGATTGAAGAGATTTCAGGGTCTTGCCCTGTTTGAGTTGGTCTACCTGTTCAGAGAAAACATTGCTTCAATTCTTTTTCAAGGTTGAAGAAATTAAAGTAGAGCACCAGCAAAATGAAAGGGGAATATAAAGGGATTATCATCGGAATTTCCATAGGTGTGGCTATTGGAGCAGTGCTAGCTACTTGGATCCTCCTATGCATGAGATTACGTAGGAAACACGCGAAAGTCCAAGTTACTGGCAATGAGCAGAGGGGCTTATCTCTTCCTATACGTTTTAACGCTGCAGATTCTAGCACAGTGCTATCAGATTCGACATTTGGGGGCCATGACTCAGTGGAAATAATTAAACGGAGTGGGTTTTTTTCATGGTTTGCAAGGTCAGAAAGGAACTTGCTTGCAACAGCTTCTGGAATTCCAAGATATCCCTTCAGGGATCTCCAGAAGGCTACACATAATTTTACAACGGTACTAGGTCAGGGTGCATTTGGTCCAGTTTACAAGGCTACAATGGCCACTGGTGAAACCGTAGCTGTGAAAGTTCTTGCAATGAATTCTAAGCAGGGGGAGAGGGAGTTCCAAACAGAGGTCATGCTGTTGGGAAGATTGCATCACAGAAATCTTGTAAATTTGGTAGGGTACTGTGCTGAGAAAGGCCATCGCATGTTGATTTATGAATTCATGAGTAATGGAAGTCTTGCGACACGTTTGTATGACGAGAGTTTGGAGCCATTAAATTGGGAACGAAGGGTTCGTATAGCACAAGATGTATCAAGAGGAATCGAATATCTCCATGACGGGGCAGTACCCTCAGTACTTCATCGAGACATAAAGTCTGCCAACATATTACTAGACCATTCTATGAGAGCCAGGGTTGCAGATTTTGGGCTTTCAAAGGAGGAAAACTTGGATGGACATGTGTCAGATATTAGAGGAACATATGGATATCTCGACCCTGAGTATATATCAACAAGAAATTTCACAAAGAAGAGTGATGTTTATAGCTTTGGTATCTTACTTTTTGAACTGATCACTGGGAGGAATCCTCAACAAGGGCTCATTGAATATATTGATCTTGCTGCAATCAGTGCAGAAGGAAAATCTGGGTGGGAGGAGATCATTGATTCACGGCTAATTGCGAAATGTAATATGGAAGAAGCTGGTGCGATGGCAGCTACTGCATACAAGTGTGTTCACAAGTCTGCAAGAAAGAGGCCAACTATGAGGGATGTATCTCAGGCTCTTTCCGAAATAGTAAGAAAGAAACGTACTGATAAGCCTGGGAAGTGCTTGAGTATTACAGTTGAGGTAAGCTCTGAAGTTGAGCAGAAGGAGCCTTCAAACGTTGAGTTCGACAATGAAGACGTTACAGCTGATGAAAACTCTGAAGCTGAGGAAATTGACTTTCCAATGGACGAGCTGAATGATGAACATAATGTCTAGTAACGAGAGAAAGGACGATTACTTTCGTTTGAACATCAGCGAGGACAGTTGTACCTGATGCTTTGATGCATTTGCCTCTTTTCGTGTACTTGCAACTCTCAATAAGTTCTGGTACCGGAACTTAACATTCAATTATACAGTTTGTATCTCAAGTAACCGATTCTTTCGTTTGTTGAGTGCTTCAACACAATATTAAGATATTAAGGAAGAGTTTTTGCTGCATCACTCTATAGGGTCATGCAGCATGCGGGATAAATCGTTTTTTAATCGGAACAAGTGGGCACATTTCGTATCATTTATTTTCTTCAGCCCAATTGTCAAATTTTTATTTTAACACGATGACAAATTGCCCAAAGACCTCAGATATTCATAAAACAGCCAAAGGAATTATTGTGAGGTTACTCAAGAATTTTTACTGGTTAGGAGATGTGTAAGCAAGATTGAAATTGTTTGTTTCAAAATTGAGAGAAATTGTTGTTGGCAAGCCATACCACAGGAGATTGACGATGGTAAGCCTTATGCTTCAACGTCAGTGGATTCTTCTTGAGCGGAAGTAAGACAGTACTTGTTATGCACCTGTGGCTGGCATAAATAAGTCAGTCACCTGGTTTATGTAAAAACTGTGCTTGTTTAAGATGTCCAAAAGGATTGTGTATTTGTAGAGATCTGTTTCCCATAAATCAGTTAACAAGAGCTCATGCAGTCACTGTACCTTAAGTGCCAAGATGATGCATGGGATCCAATCTGTAGTGTTGAAGAGAGTGTAGAGGTTTCAAAATTAGTATTTCTAGTGATCTTTTATTGAATGTTGGTGTCCATATTAGCATGCTTCTATGTTGAATCTGTATGACTGACAAACAATTAAGGGAACTCTTCAGCTTGAACAGCTCTTCGAGCTTGATTTGGACTCTCATGGTCAATGAAGCAAGATTTTT

Ace file of the UniGene sp_v3.0_unigene9876 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative serine/threonine-specific protein kinase [Oryza sativa Japonica Group] gb\|EAZ41462.1\| hypothetical protein OsJ_25984 [Oryza sativa Japonica Group] dbj\|BAH00920.1\| unnamed protein product [Oryza sativa Japonica Group]	-	-	0.0	60%
FL-Next	sp=Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%
Sma3	Serine/threonine-specific protein kinase-like protein	-	-	3.733e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	3.498e-06	-
Sma3		EC:2.7.11.3-	-	5.934e-10	-

Source	Gene names
Sma3	AT1G67720; AT1G79620; AT3G24550; AT4g39110; At1g49270; At1g49730; At1g52290; At1g70460; At1g79620; At1g79620/F20B17_5; At2g18470; At3g19300; At4g39110; At5g01950; At5g15730; At5g28680; At5g54590; B1148D12.10; CeRLK4; F13F21.28; F14F8_110; F14J22.6; F19H22

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to plasma membrane	GO:0005887	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Isopenicillin N synthase, conserved site	IPR002057	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G54590.2	CRLK1 Protein kinase superfamily protein chr5:22180480-22182698 FORWARD LENGTH=440	57%
RefSeq	Arabidopsis thaliana	NP_568809.2	protein kinase family protein [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002316964.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LFV3

Fln msg:

Fln protein: MKGEYKGIIIGISIGVAIGAVLATWILLCMRLRRKHAKVQVTGNEQRGLSLPIRFNAADSSTVLSDSTFGGHDSVEIIKRSGFFSWFARSERNLLATASGIPRYPFRDLQKATHNFTTVLGQGAFGPVYKATMATGETVAVKVLAMNSKQGEREFQTEVMLLGRLHHRNLVNLVGYCAEKGHRMLIYEFMSNGSLATRLYDESLEPLNWERRVRIAQDVSRGIEYLHDGAVPSVLHRDIKSANILLDHSMRARVADFGLSKEENLDGHVSDIRGTYGYLDPEYISTRNFTKKSDVYSFGILLFELITGRNPQQGLIEYIDLAAISAEGKSGWEEIIDSRLIAKCNMEEAGAMAATAYKCVHKSARKRPTMRDVSQALSEIVRKKRTDKPGKCLSITVEVSSEVEQKEPSNVEFDNEDVTADENSEAEEIDFPMDELNDEHNV*

Protein Length: 444

Fln nts: TAAACAGGCCGACTTTCCCAGGTCCTCAATTCCTGAATCCGGTGATTCCACTAAATCTAATTTATTCAACGACCACAAATCGCCTCGTTTCATGCCATGCCGGGCCCGGTCTCTGTCAAAAATCCACCTCCGTAATACCACTCGGATTCGAGCCCCGCACCTTGTGGTAATGCCTTCTTAGAACCTGACAGTCTCTTTGTAAAATGAACAGCGTGTCTTGGACTGAAAGGGACCGTGGATCTCGCCTGTACTTCTTGGATCCGCTCGCAAGAAATATTAAAATTTGTCAAAGATAACGATTTATATGTACTCCCATGAATCGTGGCACGACTGCTGGGATCTTTACAGAGGATGGATATATGAATTTTCGCTCAGAGGACTTGGGATTGAAATCCGTATTTCGCAATTATTCAGACTACAGGATTGAAGATATTGGACTTCGTGTTGGAGCCCGCAATTGGCAATTATTCAGGTCGTTTTGGAAAATTTCCCTTTCAGAACCGCGGCTTGTTAGACTTGTATTAATCTCTGATTAAGATCAGCTTCAAGACGGGACTTGTAGACCAGCAGCATCTGAAGGCTTGCCAATGGAATTATTAAATACATCAAGGCATTAACTCAAGCATCTCTGAACTAAATACAAGCCGATTCATCACCCATTCTGTTCAAATTCAGAGCATACAAACTGACGAAAGTTCGGATATGATAGAAAGCCACACTGAATTGCTGAAAATTTCATATAATTCAGCGACGAGGATGGTTTTGCGAAGAATTTAATTTGGGTTAGACTGGCATAACCCACGAGGCCAATAGATGAAAAGCTCATGCTCACAGAGATATATGGCGTAATATGCCGACGCAATATAGTTCTGCAAGGTACAAGACCCGAGACATTGAAGGGGAAGGATTATTTTAATATCGCGAGTACAAATGGTTCGAACAGAAGATAAGGCCTGTTTTGATCAGTTGAGAGCGCAAAAGTTTCTGACCTAATACTACTCAGAGAGCTCGCGGTGAAGATTTGCTATGATTGAAGAGATTTCAGGGTCTTGCCCTGTTTGAGTTGGTCTACCTGTTCAGAGAAAACATTGCTTCAATTCTTTTTCAAGGTTGAAGAAATTAAAGTAGAGCACCAGCAAA_-_ATGAAAGGGGAATATAAAGGGATTATCATCGGAATTTCCATAGGTGTGGCTATTGGAGCAGTGCTAGCTACTTGGATCCTCCTATGCATGAGATTACGTAGGAAACACGCGAAAGTCCAAGTTACTGGCAATGAGCAGAGGGGCTTATCTCTTCCTATACGTTTTAACGCTGCAGATTCTAGCACAGTGCTATCAGATTCGACATTTGGGGGCCATGACTCAGTGGAAATAATTAAACGGAGTGGGTTTTTTTCATGGTTTGCAAGGTCAGAAAGGAACTTGCTTGCAACAGCTTCTGGAATTCCAAGATATCCCTTCAGGGATCTCCAGAAGGCTACACATAATTTTACAACGGTACTAGGTCAGGGTGCATTTGGTCCAGTTTACAAGGCTACAATGGCCACTGGTGAAACCGTAGCTGTGAAAGTTCTTGCAATGAATTCTAAGCAGGGGGAGAGGGAGTTCCAAACAGAGGTCATGCTGTTGGGAAGATTGCATCACAGAAATCTTGTAAATTTGGTAGGGTACTGTGCTGAGAAAGGCCATCGCATGTTGATTTATGAATTCATGAGTAATGGAAGTCTTGCGACACGTTTGTATGACGAGAGTTTGGAGCCATTAAATTGGGAACGAAGGGTTCGTATAGCACAAGATGTATCAAGAGGAATCGAATATCTCCATGACGGGGCAGTACCCTCAGTACTTCATCGAGACATAAAGTCTGCCAACATATTACTAGACCATTCTATGAGAGCCAGGGTTGCAGATTTTGGGCTTTCAAAGGAGGAAAACTTGGATGGACATGTGTCAGATATTAGAGGAACATATGGATATCTCGACCCTGAGTATATATCAACAAGAAATTTCACAAAGAAGAGTGATGTTTATAGCTTTGGTATCTTACTTTTTGAACTGATCACTGGGAGGAATCCTCAACAAGGGCTCATTGAATATATTGATCTTGCTGCAATCAGTGCAGAAGGAAAATCTGGGTGGGAGGAGATCATTGATTCACGGCTAATTGCGAAATGTAATATGGAAGAAGCTGGTGCGATGGCAGCTACTGCATACAAGTGTGTTCACAAGTCTGCAAGAAAGAGGCCAACTATGAGGGATGTATCTCAGGCTCTTTCCGAAATAGTAAGAAAGAAACGTACTGATAAGCCTGGGAAGTGCTTGAGTATTACAGTTGAGGTAAGCTCTGAAGTTGAGCAGAAGGAGCCTTCAAACGTTGAGTTCGACAATGAAGACGTTACAGCTGATGAAAACTCTGAAGCTGAGGAAATTGACTTTCCAATGGACGAGCTGAATGATGAACATAATGTCTAG___TAACGAGAGAAAGGACGATTACTTTCGTTTGAACATCAGCGAGGACAGTTGTACCTGATGCTTTGATGCATTTGCCTCTTTTCGTGTACTTGCAACTCTCAATAAGTTCTGGTACCGGAACTTAACATTCAATTATACAGTTTGTATCTCAAGTAACCGATTCTTTCGTTTGTTGAGTGCTTCAACACAATATTAAGATATTAAGGAAGAGTTTTTGCTGCATCACTCTATAGGGTCATGCAGCATGCGGGATAAATCGTTTTTTAATCGGAACAAGTGGGCACATTTCGTATCATTTATTTTCTTCAGCCCAATTGTCAAATTTTTATTTTAACACGATGACAAATTGCCCAAAGACCTCAGATATTCATAAAACAGCCAAAGGAATTATTGTGAGGTTACTCAAGAATTTTTACTGGTTAGGAGATGTGTAAGCAAGATTGAAATTGTTTGTTTCAAAATTGAGAGAAATTGTTGTTGGCAAGCCATACCACAGGAGATTGACGATGGTAAGCCTTATGCTTCAACGTCAGTGGATTCTTCTTGAGCGGAAGTAAGACAGTACTTGTTATGCACCTGTGGCTGGCATAAATAAGTCAGTCACCTGGTTTATGTAAAAACTGTGCTTGTTTAAGATGTCCAAAAGGATTGTGTATTTGTAGAGATCTGTTTCCCATAAATCAGTTAACAAGAGCTCATGCAGTCACTGTACCTTAAGTGCCAAGATGATGCATGGGATCCAATCTGTAGTGTTGAAGAGAGTGTAGAGGTTTCAAAATTAGTATTTCTAGTGATCTTTTATTGAATGTTGGTGTCCATATTAGCATGCTTCTATGTTGAATCTGTATGACTGACAAACAATTAAGGGAACTCTTCAGCTTGAACAGCTCTTCGAGCTTGATTTGGACTCTCATGGTCAATGAAGCAAGATTTTT

Fln Alignment:

Contig9876___NEQRGLSLPIRFNAADSSTVLSDSTFGGHDSV--EIIKRSGFFSWFARSERNLLATASGIPRYPFRDLQKATHNFTTVLGQGAFGPVYKATMATGETVAVKVLAMNSKQGEREFQTEVMLLGRLHHRNLVNLVGYCAEKGHRMLIYEFMSNGSLATRLYD-ESLEPLNWERRVRIAQDVSRGIEYLHDGAVPSVLHRDIKSANILLDHSMRARVADFGLSKEENLDGHVSDIRGTYGYLDPEYISTRNFTKKSDVYSFGILLFELITGRNPQQGLIEYIDLAAISAEGKSGWEEIIDSRLIAKCNMEEAGAMAATAYKCVHKSARKRPTMRDVSQALSEIVRKKRTDKPGKCLSITVEVSSE
Q9LFV3______________NEQNSPTLPV--HTAKRGVVIPDDRANTESSQPPENGAPTQHQPWWNNHTKDLTVSASGIPRYNYKDIQKATQNFTTVLGQGSFGPVYKAVMPNGELAAAKVHGSNSSQGDREFQTEVSLLGRLHHRNLVNLTGYCVDKSHRMLIYEFMSNGSLENLLYGGEGMQVLNWEERLQIALDISHGIEYLHEGAVPPVIHRDLKSANILLDHSMRAKVADFGLSKEMVLDRMTSGLKGTHGYMDPTYISTNKYTMKSDIYSFGVIILELITAIHPQQNLMEYINLASMSPD---GIDEILDQKLVGNASIEEVRLLAKIANRCVHKTPRKRPSIGEVTQFILKIKQSRSRGRRQDTMSSSFGVGYE

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
722		87		12	0.992554
835			11	88	0.923564
837			11	88	0.923564
841		11	88		0.923564
846		11	88		0.923564
851			11	88	0.923564
852	88			11	0.923564
858	88	11			0.923564
859	88		11		0.923564
882		90	10		0.90298
885			90	10	0.90298
886			10	90	0.90298
890	90		10		0.90298
892		10		90	0.90298
893	10		90		0.90298
894	10			90	0.90298
895		90	10		0.90298
896		90	10		0.90298
899	10		90		0.90298
904		10		90	0.90298
1000	16			83	0.994512
1001	16			83	0.994512
1003			16	83	0.994512
1004		83		16	0.994512
1112		25		75	0.996473
1113	75	25			0.996473
1115	25		75		0.996473
1188	75	25			0.996473
1189	75	25			0.996473
1192		75		25	0.996473
1387	66		33		0.997452
1388		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain