SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9651

Length: 536 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene9651
GAATTTCTGTCAGTCAGACTCGGAGGCGATCTTCACAGCGTCCGCCAGAACTGATTAGGTTTTTAATATTATTGTTCTCTTTGTTCGTTGGAAATTTGACATGGGATTATCTGCATTTAGTGTTCATGGCACCGTGACTTGAATTTGACAGGCATCCAATCGATGAAGGAGCGGCAACAGTGCAAGTCTGAACAGGATTCTCCACTAAATGCCTGCGTGAATCAATACGAGCGACGAGAATGGAACCATGTATCGCAGAGAATTATAAATAAAGGCCTGGACAGAGATCCCAAGTCCTGTGCAGAGAGCTGGAAGAACTACTTGAAGCCTGGAATTAAGAGAGGCTCCTTATCCGAAGACGAGCAGCAACTCGTGGTAAATCTTCAGGGAAAATACGGTAACAGGTGGAAGAAAATTGCGGGCCAAGTGCCCGGAACAACGGCCAAGAGGTTGGGCAAATGGTGGGAGGTTTACAGAGACAAACAAGACAAGCCCAAAGACACGGAAGAAAGAAGCAACACAGATTCTCCTAATCA

Ace file of the UniGene sp_v3.0_unigene9651 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phantastica-like MYB protein [Eschscholzia californica subsp. californica]	-	-	4.0e-38	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%
Sma3	Asymmetric leaves1 and rough sheath, putative	-	-	7.026e-12	-

Source	Gene names
Sma3	ARP1; AS1; At2g37630; F13M22.13; GSVIVT00021322001; GSVIVT00038174001; LOC_Os12g38400; MAPHAN1; MYB091; MYB110; MYB154; MYB223; MYB224; MYB91; Os12g0572000; OsI_37943; OsI_38817; OsJ_36593; PHAN; PHAN1; PHANa; PHANb; POPTRDRAFT_556142; POPTRDRAFT_580774;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	asymmetric cell division	GO:0008356	Biological Process	-
Sma3	response to virus	GO:0009615	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	polarity specification of adaxial/abaxial axis	GO:0009944	Biological Process	-
Sma3	leaf formation	GO:0010338	Biological Process	-
Sma3		GO:0016481	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G37630.1	ATPHAN, AS1, ATMYB91, MYB91 myb-like HTH transcriptional regulator family protein chr2:15781798-15782901 REVERSE LENGTH=367	5.04467e-44	61%
RefSeq	Arabidopsis thaliana	NP_181299.1	transcription factor AS1 [Arabidopsis thaliana]	6.02558e-44	61%
RefSeq	Populus trichocarpa	XP_002309060.1	predicted protein [Populus trichocarpa]	1.4013e-45	60%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLG1

Fln msg: Distance to subject end: 255 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 138 - 400

Fln protein: CSWHRDLNLTGIQSMKERQQCKSEQDSPLNACVNQYERREWNHVSQRIINKGLDRDPKSCAESWKNYLKPGIKRGSLSEDEQQLVVNLQGKYGNRWKKIAGQVPGTTAKRLGKWWEVYRDKQDKPKDTEERSNTDSPN

Protein Length: 139

Fln nts: GAATTTCTGTCAGTCAGACTCGGAGGCGATCTTCACAGCGTCCGCCAGAACTGATTAGGTTTTTAATATTATTGTTCTCTTTGTTCGTTGGAAATTTGACATGGGATTATCTGCATTTAGTGTTCATGGCACCGTGACTTGAATTTGACAGGCATCCAATCGATGAAGGAGCGGCAACAGTGCAAGTCTGAACAGGATTCTCCACTAAATGCCTGCGTGAATCAATACGAGCGACGAGAATGGAACCATGTATCGCAGAGAATTATAAATAAAGGCCTGGACAGAGATCCCAAGTCCTGTGCAGAGAGCTGGAAGAACTACTTGAAGCCTGGAATTAAGAGAGGCTCCTTATCCGAAGACGAGCAGCAACTCGTGGTAAATCTTCAGGGAAAATACGGTAACAGGTGGAAGAAAATTGCGGGCCAAGTGCCCGGAACAACGGCCAAGAGGTTGGGCAAATGGTGGGAGGTTTACAGAGACAAACAAGACAAGCCCAAAGACACGGAAGAAAGAAGCAACACAGATTCTCCTAATCA

Fln Alignment:

Contig9651___CSWHRDLNLTGIQSMKERQQCKSEQDSPLNACVNQYERREWNHVSQRIINKGLDRDPKSCAESWKNYLKPGIKRGSLSEDEQQLVVNLQGKYGNRWKKIAGQVPGTTAKRLGKWWEVYRDKQ------------DKPKDTEERSNTDS
B8LLG1______________CSKREELN---------RGAWTAEEDTRLSEYIQSHGESGWRSLPKKA---GLNRCGKSCRLRWLNYLRPDIKRGNISPDEEELIIRMHRLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLTMSSQNPKFPMQAPADPEQSASSDS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
242	85	14			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain