SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9635

Length: 952 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9635

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LOB domain-containing protein 15 [Arabidopsis thaliana] sp\|Q8L5T5.2\|LBD15_ARATH RecName: Full=LOB domain-containing protein 15; AltName: Full=ASYMMETRIC LEAVES 2-like protein 11; Short=AS2-like protein 11 gb\|AAL38034.1\|AF447889_1 LOB DOMAIN 15 [Arabidopsi	-	-	0.0	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	LOB domain-containing protein, putative	-	-	7.574e-39	-

Source	Gene names
Sma3	ARL1; AS2; ASL1; ASL10; ASL11; ASL12; ASL13; ASL14; ASL16; ASL18; ASL19; ASL2; ASL21; ASL22; ASL23; ASL3; ASL4; ASL5; ASL6; ASL7; ASL8; ASL9; At4g00210; B1164G01.6; CRL1; CRLL1; CRLL2; CRLL3; CRLL4; F6N15.25; GSVIVT00003846001; GSVIVT00007498001; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monolayer-surrounded lipid storage body outer lipid monolayer	GO:0034430	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	specification of symmetry	GO:0009799	Biological Process	-
Sma3	polarity specification of adaxial/abaxial axis	GO:0009944	Biological Process	-
Sma3	proximal/distal pattern formation	GO:0009954	Biological Process	-
Sma3	leaf morphogenesis	GO:0009965	Biological Process	-
Sma3	xylem development	GO:0010089	Biological Process	-
Sma3	organ boundary specification between lateral organs and the meristem	GO:0010199	Biological Process	-
Sma3	lateral root formation	GO:0010311	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	petal development	GO:0048441	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oleosin	IPR000136	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Lateral organ boundaries, LOB	IPR004883	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Uncharacterised conserved protein UCP038127, LOB	IPR017394	-	-
Sma3	Asymmetric leaves, AS2/LOB	IPR017414	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G40470.1	LBD15, ASL11 LOB domain-containing protein 15 chr2:16902430-16903546 REVERSE LENGTH=224	76%
RefSeq	Arabidopsis thaliana	NP_565933.1	LOB domain-containing protein 15 [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002328987.1	predicted protein, partial [Populus trichocarpa]	75%

Full-Lengther Next Prediction

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
137		60		40	1.0
139	60		40		1.0
141			40	60	1.0
145		60		40	1.0
146		28		71	1.0
148			28	71	1.0
150	14		14		0.984337
152		42	57		1.0
153	71			28	1.0
155	28			42	1.0
158			42	28	1.0
159		71	28		1.0
160	28		71		1.0
161	71	28			1.0
163			71	28	1.0
164	42			28	1.0
166		28		71	1.0
167	28			71	1.0
170		28	71		1.0
171	28		71		1.0
264	14	85			0.993533
332	11			88	0.923564
567		20		80	0.995493
571	20	80			0.995493
572		20		80	0.995493
574	80			20	0.995493
575	80			20	0.995493
577	60		20		0.99255
578	80	20			0.995493
595	75			25	0.996473
597			25	75	0.996473
598		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain