SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9532

Length: 1392 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9532

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein plastid transcriptionally active 16 n=3 Tax=Arabidopsis RepID=Q9STF2_ARATH	-	-	0.0	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%

Source	Gene names
Sma3	At3g46780; GSVIVT00024265001; Os05g0291700; OsI_19308; OsJ_17919; PHYPADRAFT_145629; POPTRDRAFT_549130; POPTRDRAFT_723209; RCOM_0733140; T6H20.190;

Source	GOs	Term	Type	Identity
Sma3	plastid chromosome	GO:0009508	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G46780.1	PTAC16 plastid transcriptionally active 16 chr3:17228766-17231021 FORWARD LENGTH=510	53%
RefSeq	Arabidopsis thaliana	NP_566886.2	protein plastid transcriptionally active 16 [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002299849.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM72

Fln msg: Separated hits, possible frame ERROR between 639 and 674, your sequence is shorter than subject: 425 - 520

Fln protein: NVNVFNPLSLGKSRQQDPSTVFVAGATGQFGARISQKLLRQGFSVRAAVSDLSFAQELAQFATQYKIIAAEDAKRLNAVEFSFEDIESTAKAIGNASKAVVSIGPTEDGPSSKVTTTDALNVIEAAKLANVNHIVVVYESDGASSNVLDEISSFFSNLFGKSEISLSELTERIVEMGLSYTILKASSTDDFISEKDCNLVLKAEGSADVNNKxxxxxxxxxxxxxKVSKTQVASVVAEVFANTSISENKTIDVAASPSAPSLPVYELLSAIPTDGRKEAFAEAQAKAKAEEEERIAAENARKKQELAEQLEAEAKRLAEKEAEATELAAQVKADGANASFDYFASKAKAFGVDIFGGSKGTQIITSSNSQSRKSLETPVVTVKGEEKYATSQPKKGFSSVFKLPAIKKKTGGVFKQETIYVDDD*

Protein Length: 426

Fln nts: AATGTTAATGTATTTAACCCTCTTTCCCTGGGTAAGTCGCGCCAGCAGGATCCCTCTACAGTGTTTGTAGCAGGAGCCACGGGCCAGTTTGGTGCCAGGATTTCACAGAAGCTGTTACGCCAAGGTTTTTCGGTTAGAGCGGCAGTTTCAGACCTCTCATTTGCGCAGGAATTAGCACAGTTTGCAACCCAATATAAGATAATTGCTGCAGAGGATGCCAAGCGTCTTAATGCAGTGGAATTCAGTTTTGAGGATATTGAATCCACAGCTAAAGCCATAGGAAATGCCAGTAAAGCAGTGGTATCAATAGGACCCACAGAGGATGGACCTAGTTCCAAAGTTACTACAACTGATGCTTTGAACGTTATTGAAGCAGCCAAGCTAGCAAATGTGAATCATATTGTTGTTGTTTACGAATCTGATGGAGCGTCTTCAAATGTTCTTGATGAAATCTCTTCATTTTTCAGCAACTTGTTTGGAAAATCAGAAATATCATTATCAGAGCTTACTGAAAGAATTGTGGAAATGGGATTAAGTTACACTATCCTGAAGGCCAGTTCCACGGATGATTTTATTTCAGAGAAAGACTGCAACCTTGTTCTTAAGGCGGAAGGAAGTGCAGACGTAAACAACAAAGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTAAGGTTTCAAAGACACAAGTTGCATCTGTTGTAGCTGAGGTTTTCGCAAACACTTCCATCTCAGAGAACAAGACTATTGATGTTGCAGCCAGCCCTTCTGCACCTTCTCTGCCAGTTTATGAGCTTTTAAGTGCCATTCCAACAGATGGAAGAAAGGAAGCTTTCGCCGAGGCCCAAGCGAAAGCCAAAGCTGAAGAAGAAGAGCGCATAGCTGCAGAAAATGCACGCAAAAAACAGGAGCTTGCTGAACAACTTGAAGCAGAAGCAAAAAGGCTTGCAGAAAAAGAAGCTGAAGCCACTGAACTCGCTGCCCAAGTTAAGGCAGATGGTGCAAATGCTTCATTCGATTATTTTGCAAGCAAGGCTAAAGCATTCGGTGTAGATATTTTTGGGGGAAGCAAAGGAACTCAAATCATAACATCCTCTAATTCTCAGTCTCGAAAGAGTCTAGAAACTCCAGTTGTTACTGTGAAAGGAGAAGAAAAATATGCAACTTCACAGCCAAAGAAAGGTTTTAGCAGTGTATTCAAACTACCAGCAATAAAGAAGAAAACAGGAGGCGTGTTTAAGCAAGAAACCATCTATGTAGATGATGATTAATTAATTTGATTATTTCCATACTACTTCTCATGGAATCTTTCTGTTACATTTACTTGTAGAACGGGCAATTTCAATAAATTACTCTGTGCAAGATTAGGTGACAAGAATGTTATCACATT

Fln Alignment:

Contig9532___NVFNPLSLGKSRQQDPSTVFVAGATGQFGARISQKLLRQGFSVRAAVSDLSFAQELAQFATQYKIIAAEDAKRLNAVEFSFEDIESTAKAIGNASKAVVSIGPTEDGPSSKVTTTDALNVIEAAKLANVNHIVVVYESDGASSNVLDEISSFFSNLFGKSEISLSELTERIVEMGLSYTILKASSTDDFISEKDCNLVLKAEGSADVNNKVxxxxxxxxxxxxKVSKTQVASVVAEVFANTSISENKTIDVAASPSAPSLPVYELLSAIPTDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKADGANASFDYFASKAKAFGVDIFGGSKGTQIITSSNSQSRKSLETPVVTVKGEEKYATSQPKKGFSSVFKLPAIKKKTGGVFKQETIYVDDD
B8LM72______________NQFNPLSLGRTRQQDPSTVFVAGATGQFGARISQKLLRQGFVVRAAVSDLSLAQELAQFATQYKIIAAEDAKRLNAVEFNFEDIESTAKAIGNASKAVVSIGPTEDGPSSKVTTADALNVIEAAKLANVNHIVVVYESDGASSNVLDGISSFFSNLFGKSEMSLAELIERIVEMGLSYTILKASSTDDFISEKDCNLVLKAEGSADVNNKVxxxxxxxxxxxxKVSKTQVASVVAEVFANTSISENKTIEVAASPSAPSLPVYELLSAIPTDGRKEAFAEAQAKAKAEEEARMAVENARNKKELADQLEAEAKKLAEKEAEATELAAQVKAGAANASFDFFASKAKAFGVDIFGENKETQIIASSNSQPGKNLETPVVTVKGEEKYATLQPKKGSNSVFKLPPINKIMGGLFNKETIYVDDD

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
35	66	33			0.997452
40		66		33	0.997452
42	33	66			0.997452
45		33	66		0.997452
46		66		33	0.997452
47	66			33	0.997452
50	66	33			0.997452
52		66	33		0.997452
53		66		33	0.997452
55	33			66	0.997452
168	25		75		0.996473
190		50	50		1.0
245	20		80		0.995493
428		66	33		1.0
437	33		66		1.0
449	66		33		1.0
1210		83		16	0.994512
1233	66		33		1.0
1235	33		66		1.0
1301	66		33		1.0
1329	20			80	0.995493
1330		20		80	0.995493
1331	80		20		0.995493
1338	25		75		0.996473
1339	75	25			0.996473
1341		75		25	0.996473
1342			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain