SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9527

Length: 947 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9527

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF3444 domain containing protein	-	-	3.0e-28	44%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	55%
Sma3	Heat shock protein binding protein, putative	-	-	3.704e-06	-

Source	Gene names
Sma3	At2g05230; At2g05250; At2g05250/F5G3.15; GSVIVT00002795001; GSVIVT00006503001; GSVIVT00017963001; GSVIVT00017964001; GSVIVT00029128001; OSIGBa0096P03.4; OSJNBa0052M16.36; OSJNBa0053B21.9; Os02g0510000; Os04g0388800; OsI_07363; OsI_11948; OsI_15662; OsJ_06

Source	GOs	Term	Type	Identity
Sma3	heat shock protein binding	GO:0031072	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3	Nodulin-like	IPR010658	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G05230.1	DNAJ heat shock N-terminal domain-containing protein chr2:1899818-1901938 REVERSE LENGTH=706	1.0e-28	50%
RefSeq	Arabidopsis thaliana	NP_565322.1	DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]	2.0e-28	50%
RefSeq	Populus trichocarpa	XP_002322265.1	predicted protein [Populus trichocarpa]	9.0e-31	52%

Full-Lengther Next Prediction

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
386	33			66	1.0
388		66	33		0.997452
389		66		33	0.997452
392		33	66		1.0
395	66			33	0.997452
396	33		66		0.997452
475	25	75			0.996473
477			25	75	0.996473
478			25	75	0.996473
502		20		80	0.995493
503			20	80	0.995493
507	80		20		0.995493
508	80			20	0.995493
513		20		80	0.995493
518		20		60	0.99255
520			20	80	0.995493
525		25	75		0.996473
526	75			25	0.996473
527		25		75	0.996473
546		50		50	1.0
576	83	16			0.994512
578	83			16	0.994512
581			83	16	0.994512
582		83	16		0.994512
584		16	83		0.994512
585	83	16			0.994512
597		16	83		0.994512
598	16		83		0.994512
599	83	16			0.994512
601	83	16			0.994512
602	16	83			0.994512
728	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain