SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9467

Length: 1504 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9467

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam02704, GASA, Gibberellin regulated protein	-	-	2.0e-31	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	Gibberellin-regulated protein 2	-	-	1.486e-24	-

Source	Gene names
Sma3	At1g22690; At1g22690/T22J18_14; At1g75750; At2g18420; At4g09610; F10A5.6; F10A5_16; GASA1; GASA2; GASR1; GSVIVT00016155001; GSVIVT00031825001; GSVIVT00031826001; LOC_Os03g55290; LtCor11; LtCor12; OJ1301_G07.4; OJ1378_A04.9; OSJNBb0048A17.7; Os03g0760800;

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Gibberellin regulated protein	IPR003854	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G09610.1	GASA2 GAST1 protein homolog 2 chr4:6074927-6075573 REVERSE LENGTH=99	2.0e-14	70%
RefSeq	Arabidopsis thaliana	NP_192699.1	gibberellin-regulated protein 2 [Arabidopsis thaliana]	3.0e-14	70%
RefSeq	Populus trichocarpa	XP_002327240.1	predicted protein [Populus trichocarpa]	4.0e-20	78%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN51

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 77 - 108

Fln protein: SSSSESLRIWIVLFNADCNAACERRCAKASRHKMCLRACGACCARCNCVPPGTSGNEDTCPCYATITTHGRRHKCP*

Protein Length: 78

Fln nts: TATGCAGCAGGCTTTCCCGTTTTCATCCTCTTGTGTCCGAACATAATACATATTGATTATTTTTCGATTCTACACATACTTCATTTGGGTAAGAGCAGCTTCCATGGCTTCCGCTAGCAGGCTGTTTGTCATATATTTTGTGACGATACTTCTTGTACAGAGCTATGTACAAATTGCTGAGAGTGGAGCTTCCACAGTAGTTGCGGTGAGTATATATGCAGCGCTGATTAAGTTATCACATTGATATTATTCATTCATAGGTGGAATTCTAATCATAGATTATTAATAGAAGTAGGTGGCCCAATTTTACATATACTGAACTAATCATATTGTCGTTTCCCTTTCCTCTGGTGCCAGTCGCAAGAAAGCGAGATTAACAGGAGGGTCCCAAAGACCATAGGTATAATATGTATAATATGTTCTAAATGCCATACGTTGCGTCGTCAATAATTGTTATTGCTGCTGCTGTCAATAATTGTTATTCTTATTTGTTATTGTCGTAATCTATTCATTTGAATTTTGGTTGTTACTCTACTGCTCCATCCTTTCTTAACATCAGTTCAACGTTCAGTTTGGACATCACTTGTTATTCTTAACATCAGTTAACCGTTCAATCTGGACATAATTTGTTATTGTTGGTCTCGATTCAATATTTTCTTGAACTGAATTCAAAGCTTATTTTAACATCAACGTTACTATTCTTGTCAGAGTGAACGTTACTATTCTTGTCAGAGTGGTTCTAGTATTAGATTTTTTTATCAAGTTATTGAAATATGATCATTTTTTCTATAAAAATTAGATAAAAGAATGGTATGTTTATAGGTTTCTACTCATCTAATGTGCTTATTCAAGATATGAATCACAGAAACCTGAATGGTAAAATCTATTCCATTTTTGATAATTTATGAATCTATTCAATTTTTGATAACTTTTTTCTAAAGTTGAAGCTCATCTTCAGAATCATTACGTATTTGGATTGTTTTGTTTAACGCAGATTGCAATGCAGCTTGTGAAAGAAGATGCGCAAAAGCATCCCGCCATAAAATGTGTTTAAGAGCTTGCGGTGCATGCTGTGCGAGGTGCAATTGTGTTCCTCCCGGTACATCTGGAAACGAGGATACATGCCCCTGCTATGCCACCATAACAACACATGGCCGGAGACACAAATGCCCTTGA___GAATATGATATATGCATGCATTATATTTATGCAGTGATATATACGTATGTTGTATTTGCGATTTGACCGTCAAACTTTCAGATATTAGTTGGTATTATAGGTATTTATACATGGAAATATATAAATGTATACAAATAAATGTATCCCATGCTTTGATGAGCGTGGCAGATGCATATTCAGTTTATCTTCGTCGGAAAATGTATGGTCAGTGTCACAGATATTGAATAAGATATATAATCATTGGATACATCTCTATACTCTTTTCTCCATGAATAACTGGTTATTATTTCAGGGATGGGTACTACAAATATGGGATAGGTGCTACAAA

Fln Alignment:

Contig9467___VLFNADCNAACERRCAKASRHKMXXXXXXXXXXXXXXVPPGTSGNEDTCPCYATITTHGRRHKCP
A9NN51______________LLQTIDCNAACGERCTKASRHNMCLRACGTCCARCNCVPPGTSGNQDLCPCYASLKTHGNRPKCP

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1238	95			4	1.0
1263		2		97	0.966038
1381		7	92		1.0
1394			7	90	1.0
1424	18		81		1.0
1431	20	20		60	0.999999
1432	88			11	0.923564
1433	25			75	1.0
1434	85	14			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain