SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9389

Length: 2853 nt

UniGene Fasta

>sp_v3.0_unigene9389
AAATATAAACCCTTCCAACATTTTACGATCTTGAATTCACAACTATTTCAACATTTCAACGTTTCGTTTTGCCTAGAAAGGGGTAACGAATTCCCAGCATTTTCCGCGCTTGGATTCTCAACTATTCCAATCCGAAGCTGTAACTGCAACGGCTTCTACATCCCCCGCTGCAGCTGTTGGATATTGGGTCCCGAATTTAGATATCGGAAAAAGACAAAATCACTTCCAGGACCCCTCTGGTATGGATCTTGCTCTCGCTCACCAACAGCATCTCACCCTGGATATGGATTTCGATCATGGGGTCAGAATCAACGGTCTGACCGTTATCATTATACAATTTTGGATATGGATTTCGATCATGGGGTCAGAATCAACAGTTTGACCGTAATCATTATACAATTTTGGGTGCACAGTCGATGTAAATCAGGAATCAGGATGCTATCTTTTTTTAATTAAATTGCACTGGAAGGAATAGGAATTACAAGTTTATGATTTCTTTTAATTAAATTGCACTGGAAAGGAATAGGAATTACAAGCTTATTTCCAAAGAACAGTACAATTAGAAAACATAGAACGTGACAGAATTTAACGAAACACATTTTTAGTAGTAGAAATTAAGGACACCTCTGATTTATATTAGAGGTTACATTAACAAGTTTACATACCACTCAAATATTTTGCTCACTAGAGCCACGATCAAAAACAAGACATTTGTTTACACCAAACCACGATCACGATCCCCACCGACAACTATAATAAGCACAGTCCCTCGCCAACAACAGAACAATTAGAGCCACGGAAAATATAAGAACCAAAGAAAATCAAGCCCTAAACACCATGCTTATCTCCTCCAAGAACCATCAGAGCCACCACCACCGCCGTAGCCACCAGCGCCACCACCATAGCCTCCAACCCCCGCCACCACCGTAGCGTGATCCACCTCCGCCACCATAACTTCCCCTGCCACCATAAGACCCGCCGCCGCCACCGCGGCCGCCTCCATAACCCCTGTCTGGACGGTCACGGCCACCTCCGTAACCACCACCGCCGCCGCCACGGTAGCCACGGCCACCGCCACCGCCACCACCTCCGTTGCCTCTGGACTGGGCCGGATTAACAGTGATATTCCTGCCGTCGAGCACCTTGCCATTCATGGCATCGATGGCATCCCTCATTGACTGTTCGTCGCTGAAGGTCACGAAGCCGAATCCCCGGGATCTGCCAGTTTCCCGGTCGCTTATAATCTTCGACTCCAAAATTTCCCCGAAGGGACTGAAAGCGTCCTGCAAGCTTCTATCGTCGGTGGCCCAAGCAAGACCCCCGACGAAGCAACGGTATTCGACCTCGGCTGAAGCCATCATCTTGAAATCAAAAGCACCGGAGCCTCGACAAATCAAGAAGCCACGAACCCAGACCCAGACCAAGAAACAAACGGAACCGAACCGAACCAGAGTACGCGGGGTTTATGGGGCGGTCTGTCCCTGGTTCGTATCGGTTCTGTTCGTTTTCGGTTCTGTTCCTGGATCTGGTCCTGTGTTAGTGGTTTCTTGCTCTCTCTTGTTCTGTCAAGTTTTCTTAAACTTCAGTCTGAGAAGATGGCTTCAGCAGATGTTGAGTTCCGATGCTTCGTTGGAGGTCTTGCATGGTCTACTGACGACAGAAGCCTGCAGGAGGCTTTCAGCCCCTACGGCGAAGTCGTGGAATCCAAGATTATAAGTGATCGGGAAACCGGTAGATCCCGTGGATTCGGCTTCGTGACCTTCAACGATGAGCAATCGATGAGGGACGCCATCGACGCAATGAATGGAAAGATGCTTGACGGGAGGAGCATCACCGTTAATCCAGCCCAGTCCAGAGGAAACGGGGGCGGTGGTGGAGGCGGTGGCTCTCGTGGCTACCGTGGGGGCGGTGGTGGTGGGGGTTATGGTGGAAGCCGTGATCGTGGCGAACGTGGTTATGGCGGTAGTGGCGGCTATGGTGGTGGTGGTGGTGGTTATGGTGGTGGCGGTGGCGGCTATGGTGGCGGCGGCGGTTCTCGCTATGGTGGTGGTGGTGGTTCCGATGGTGGTAGCTGGAGGAGATAGTTAATATGATGCTGCGCTAAGGTTTTTTTGTCTGCAAGTGGTCTTATGTTTTGGTTCTGTAATAATCCTGTTGGTGGTAGAGCTATATGCTGGTAACTGTCCCTGGTCTTGGTATTTCGATGTTCTGTAAACTCTGTCTGGTTTTTGATCTGGATCTCTGTTGCTCTCGATGAGCTGTATCGAAGCGGAAAATCTGGTTCTAATACGTCTGTAATTGCAATCTGAATATGCACTATACGGTTTTACTATCTCATGGTTATGGTTTCTTCCAAAGTTGCGAATTTTTAGTGTTTTTAAAAATGACCAAAATATGCAGTTTTTCTGATGTCACATATAGACGCTTTATTTTTGGTTGAAGTATTCTTTAATGGTCATCGGGATGGGGTGTTTTGATGGCGGGGTTCGTTTTCTAACTCCTTATTGTTGTAAATTGTGTAATGGGTAATGGGTTTCTGCGCACTGTTTCAATATAGAGATACGTAATGTAACATTGGGCTGGTTCGGGTATTGTCTTAGCACTAGTAAGTGCCTTCACACAGTATTGGCATGTCAATGCTCTGTAGGCGAGTATTGTCTTAGCACTAGTAAGTGCCTTCACACAGTATTGGCATGTCAATGCTCTGTAGGCTTGTTTTTTGCCAAACAGTAGATAGATCGATGGGTTTGTGCATGCTGTTTCAATATTATTCTTCTGTAACATTGTGCTGGTTATGCTATTTGCTGAGCACTATTAAGTGCCTTCACACAAAGCGCTATTTGAATCGGCATG

Ace file of the UniGene sp_v3.0_unigene9389

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL	-	-	9.99995e-41	100%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	e value	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR015465	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G21660.1	ATGRP7, CCR2, GR-RBP7, GRP7 cold, circadian rhythm, and rna binding 2 chr2:9265477-9266316 REVERSE LENGTH=176	5.0e-37	75%
RefSeq	Arabidopsis thaliana	NP_850017.1	glycine-rich RNA-binding protein 7 [Arabidopsis thaliana]	4.0e-37	75%
RefSeq	Populus trichocarpa	XP_002305429.1	predicted protein [Populus trichocarpa]	3.0e-37	79%

Full-Lengther Next Prediction

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
164		66	33		0.997452
166		66		33	0.997452
169	33			66	0.997452
172	66			33	0.997452
315	50		50		1.0
326	50			50	1.0
332		50		50	1.0
334		50		50	1.0
384	20	80			0.995493
416		50	50		1.0
420	50		50		1.0
511		33	66		0.997452
546		33	66		1.0
578		16		83	0.994512
579			83	16	0.994512
580	83			16	0.994512
596	16	83			0.994512
613	85		4		0.999793
848		4		95	0.99692
898	81		6	12	0.999961
899	6	81		12	0.999961
901	71	7	14	7	0.999985
908		90	10		0.991528
911	20	40			1.0
913	33	66			0.99834
915		66		33	0.99834
1382	12		87		0.999964
1500		75		25	0.996473
1511		75		25	0.996473
1519			60	40	1.0
1524	40		60		1.0
1927			9	90	0.99541
1978		22		77	1.0
1985	14		14		0.995236
1989	25		75		0.997389
1991	25		25	50	0.998462
2363	33		66		0.997452
2368		66		33	0.997452
2396	66			33	0.997452
2397	66		33		0.997452
2464	80		20		0.995493
2468			80	20	0.995493
2471		20		80	0.995493
2472		20	80		0.995493
2473			80	20	0.995493
2474			80	20	0.995493
2478		20		80	0.995493
2480	20			80	0.995493
2482		20	80		0.995493
2484		33		66	0.997452
2485			66	33	0.997452
2488	33		66		0.997452
2671	33	66			0.997452

SSRs (tot: 4)

Start position	End position	Sequence	Length
1068	1085	GCCACC GCCACC GCCACC	18
1435	1449	GAACC GAACC GAACC	15
1976	1994	TGG TGG TGG TGG TGG TGG T	19
2042	2057	TGG TGG TGG TGG TGG T	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain