SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9383

Length: 2300 nt

UniGene Fasta

>sp_v3.0_unigene9383
TATGGGGACGTTTCAGTGAAATAGTCGGTTGGGGGCTAGGTTGATGCTCTTTATTGCTTTAACCATCACGGAGGGAGGCATCCATTCTGAGGAGGGCACATTTTCTAAGCACCTGCGTTGAAAACTTTTGAAAAGACTTCGTAGAACAAACCCTCAAAATTTTCCGCGAATTTCCTCACTGGATTGGGCCGAACGCAGTGACCTAGGGTTTAACTCCAAATTAAACAAAAACTAACAATGGCGCTGCGTGTGTTAAACCCCAATGCCGAGGTTCTGAACAAATCAGCAGCATTATATATGAATATCAATGCCGCCAAGGGCTTACAAGACGTTCTCAAGACAAATCTTGGACCCAAGGGCACTATCAAAATGCTTGTTGGAGGCTCTGGAGACATTAAGCTCACTAAAGATGGGAACACCCTTTTGAAAGAAATGCAAATTCAAAATCCTACAGCTATCATGATAGCAAGGACAGCTGTTGCTCAGGATGATATAAGTGGAGATGGCACAACCTCTACTGTTCTTTTCATTGGGGAGCTCATGAAACAATCAGAGCGTTACATAAGTGAAGGAATGCACCCACGTGTGCTAGTGGATGGATTTGATATTGCAAAAAGAGCTACATTGGATTTTCTTGAGAAATTCAAAACCTCAGTTCTTATGGAGGAAGCCCCTGACAAGGAGATGTTGAAAATGGTAGCAAGGACAACTCTTAGGACAAAGCTCTATGAATCTCTTGCAGATCAATTAACTGAGATTGTTGTGAATGCGGTGCTTTGTATCCAAAAGCCAGAGGAATCCATTGATCTATTTATGGTGGAGATTATGCATATGAGGCATAAGTTTGACATAGATACTCATCTGGTTGAAGGCTTGGTCCTTGATCATGGAGCCCGACATCCGGACATGAAGAAAAGAGTGGAGAATTGTTACATATTGACTTGCAATGTATCTCTAGAATATGAAAAGAGTGAAGTAAATGCAGGTTTCTTTTACTCAAATGCAGAGCAGAGGGAGAAAATGGTTTTAGCAGAAAGAAGACAAGTAGATGAGAAAATTCAAAAGATCATTAACCTCAAGAAGAAAGTTTGTGATGGCACTGACAACAATTTTGTTGTGATCAATCAAAAGGGAATAGATCCTATGTCACTCGATCTTCTTGCAAGAGAAGGGATTGTAGCTTTGAGGAGAGCAAAGAGGCGCAATATGGAGAGATTGGTTTTAGCTTGTGGTGGGGATGCTGTCAATTCTGTTGATGATCTGACTCCTAATGTTCTTGGATGGGCTGGGCTTGTATATGAGCATGTCCTAGGGGAAGAAAAGTACACTTTTGTGGAAAATGTTAGGAATCCTCACTCATGTACAATTCTAATAAAAGGACCTAATGATCATACTATTGCTCAAATTAAGGATGCTGTACGTGATGGTCTCAGAGCTGTTAAAAACACACTTGAAGATAGATCTGTTGTCTTGGGGGCTGGAGCTTTTGAAGTTGCTGCAAGCCAGCATCTCAAACACAATGTCAAAAAGACTGTTCAGGGGCGTGCACAACTAGGAGTTGAAGCCTTCGCTGATGCCCTTTTGGTTGTGCCCAAGACTCTGGCAGAAAATTCTGGACTAGATACTCAGGATGTCTTGGTTGGACTACAGGTGGAGCATGACAAAGGCAACATTGTTGGTTTAAATCATCATACAGGAGAACCGATGGACCCATACTTGGAGGGAATTTTCGACAACTACTCTGTCAAGCGCCAGATTATAAATTCTGGCCCTGTAATTGCATCGCAGCTGCTACTTGTGGATGAGGTCATCCGTGCTGGACGGAATATGCGAAAAGGCTGAAGCTTGCACATTAGCTTTAATAAGCTTATATGGTGTTATGCATCAACACTATGCTGAGGTGGGATAGCAGTTTTGTAGAGTCCAGGACAGTGTGTTTAGTAATGAATGAGCATGTAATATGAGTTGGCATGAGATTGGTTCGTTGAAGAGTTATGTATCGCAAACATTGCCTACTATTGGCAATTTGGGATTTGGATCAGTGGTGTGCTCGGTGCTTTTGTTTTTGCGTACAAAGCGCCTCGAGTGTCCTGACATTTTGCATTCTTGCATCGATTGAAAAGTGCTTGCTTTGCTTTAGCTTTAGTGTCTGGGATATTCATACGTGCTTGGCTCTTTTATTTTTCAATGTATGATAAATCGATGAACCCTTGTACATGCTTGACCTTATCAGAGACAATACATAAAAACATAAAAGAGAAATATGTATGGTTGGCAGTTCCCTGATTTTTGGTATATGA

Ace file of the UniGene sp_v3.0_unigene9383

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chaperonin protein n=6 Tax=Poaceae RepID=Q6ASR1_ORYSJ	-	-	0.0	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Putative chaperonin	-	-	1.639e-07	-

Source	Gene names
Sma3	At3g02530; At3g02530/F16B3.16; At5g16070; CCT6; CHLREDRAFT_129972; F16B3.16; F1N13_210; GSVIVT00038194001; MICPUCDRAFT_34990; MICPUN_94492; OSJNBa0077J22.11; OSTLU_19801; OSTLU_29714; Os05g0147400; OsI_18449; OsJ_17110; Ot13g02350; PHATRDRAFT_22666; PHYPA

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-
Sma3	T-complex protein 1, zeta subunit	IPR012722	-	-
Sma3	Chaperone, tailless complex polypeptide 1	IPR017998	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G02530.1	TCP-1/cpn60 chaperonin family protein chr3:528806-532457 REVERSE LENGTH=535	86%
RefSeq	Arabidopsis thaliana	NP_186902.1	TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana]	86%
RefSeq	Populus trichocarpa	XP_002329328.1	predicted protein [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7V5

Fln msg: your sequence is longer than subject: 535 - 342

Fln protein: MALRVLNPNAEVLNKSAALYMNINAAKGLQDVLKTNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVLFIGELMKQSERYISEGMHPRVLVDGFDIAKRATLDFLEKFKTSVLMEEAPDKEMLKMVARTTLRTKLYESLADQLTEIVVNAVLCIQKPEESIDLFMVEIMHMRHKFDIDTHLVEGLVLDHGARHPDMKKRVENCYILTCNVSLEYEKSEVNAGFFYSNAEQREKMVLAERRQVDEKIQKIINLKKKVCDGTDNNFVVINQKGIDPMSLDLLAREGIVALRRAKRRNMERLVLACGGDAVNSVDDLTPNVLGWAGLVYEHVLGEEKYTFVENVRNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTLEDRSVVLGAGAFEVAASQHLKHNVKKTVQGRAQLGVEAFADALLVVPKTLAENSGLDTQDVLVGLQVEHDKGNIVGLNHHTGEPMDPYLEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRKG*

Protein Length: 536

Fln nts: TATGGGGACGTTTCAGTGAAATAGTCGGTTGGGGGCTAGGTTGATGCTCTTTATTGCTTTAACCATCACGGAGGGAGGCATCCATTCTGAGGAGGGCACATTTTCTAAGCACCTGCGTTGAAAACTTTTGAAAAGACTTCGTAGAACAAACCCTCAAAATTTTCCGCGAATTTCCTCACTGGATTGGGCCGAACGCAGTGACCTAGGGTTTAACTCCAAATTAAACAAAAACTAACA_-_ATGGCGCTGCGTGTGTTAAACCCCAATGCCGAGGTTCTGAACAAATCAGCAGCATTATATATGAATATCAATGCCGCCAAGGGCTTACAAGACGTTCTCAAGACAAATCTTGGACCCAAGGGCACTATCAAAATGCTTGTTGGAGGCTCTGGAGACATTAAGCTCACTAAAGATGGGAACACCCTTTTGAAAGAAATGCAAATTCAAAATCCTACAGCTATCATGATAGCAAGGACAGCTGTTGCTCAGGATGATATAAGTGGAGATGGCACAACCTCTACTGTTCTTTTCATTGGGGAGCTCATGAAACAATCAGAGCGTTACATAAGTGAAGGAATGCACCCACGTGTGCTAGTGGATGGATTTGATATTGCAAAAAGAGCTACATTGGATTTTCTTGAGAAATTCAAAACCTCAGTTCTTATGGAGGAAGCCCCTGACAAGGAGATGTTGAAAATGGTAGCAAGGACAACTCTTAGGACAAAGCTCTATGAATCTCTTGCAGATCAATTAACTGAGATTGTTGTGAATGCGGTGCTTTGTATCCAAAAGCCAGAGGAATCCATTGATCTATTTATGGTGGAGATTATGCATATGAGGCATAAGTTTGACATAGATACTCATCTGGTTGAAGGCTTGGTCCTTGATCATGGAGCCCGACATCCGGACATGAAGAAAAGAGTGGAGAATTGTTACATATTGACTTGCAATGTATCTCTAGAATATGAAAAGAGTGAAGTAAATGCAGGTTTCTTTTACTCAAATGCAGAGCAGAGGGAGAAAATGGTTTTAGCAGAAAGAAGACAAGTAGATGAGAAAATTCAAAAGATCATTAACCTCAAGAAGAAAGTTTGTGATGGCACTGACAACAATTTTGTTGTGATCAATCAAAAGGGAATAGATCCTATGTCACTCGATCTTCTTGCAAGAGAAGGGATTGTAGCTTTGAGGAGAGCAAAGAGGCGCAATATGGAGAGATTGGTTTTAGCTTGTGGTGGGGATGCTGTCAATTCTGTTGATGATCTGACTCCTAATGTTCTTGGATGGGCTGGGCTTGTATATGAGCATGTCCTAGGGGAAGAAAAGTACACTTTTGTGGAAAATGTTAGGAATCCTCACTCATGTACAATTCTAATAAAAGGACCTAATGATCATACTATTGCTCAAATTAAGGATGCTGTACGTGATGGTCTCAGAGCTGTTAAAAACACACTTGAAGATAGATCTGTTGTCTTGGGGGCTGGAGCTTTTGAAGTTGCTGCAAGCCAGCATCTCAAACACAATGTCAAAAAGACTGTTCAGGGGCGTGCACAACTAGGAGTTGAAGCCTTCGCTGATGCCCTTTTGGTTGTGCCCAAGACTCTGGCAGAAAATTCTGGACTAGATACTCAGGATGTCTTGGTTGGACTACAGGTGGAGCATGACAAAGGCAACATTGTTGGTTTAAATCATCATACAGGAGAACCGATGGACCCATACTTGGAGGGAATTTTCGACAACTACTCTGTCAAGCGCCAGATTATAAATTCTGGCCCTGTAATTGCATCGCAGCTGCTACTTGTGGATGAGGTCATCCGTGCTGGACGGAATATGCGAAAAGGCTGA___AGCTTGCACATTAGCTTTAATAAGCTTATATGGTGTTATGCATCAACACTATGCTGAGGTGGGATAGCAGTTTTGTAGAGTCCAGGACAGTGTGTTTAGTAATGAATGAGCATGTAATATGAGTTGGCATGAGATTGGTTCGTTGAAGAGTTATGTATCGCAAACATTGCCTACTATTGGCAATTTGGGATTTGGATCAGTGGTGTGCTCGGTGCTTTTGTTTTTGCGTACAAAGCGCCTCGAGTGTCCTGACATTTTGCATTCTTGCATCGATTGAAAAGTGCTTGCTTTGCTTTAGCTTTAGTGTCTGGGATATTCATACGTGCTTGGCTCTTTTATTTTTCAATGTATGATAAATCGATGAACCCTTGTACATGCTTGACCTTATCAGAGACAATACATAAAAACATAAAAGAGAAATATGTATGGTTGGCAGTTCCCTGATTTTTGGTATATGA

Fln Alignment:

Contig9383___MVEIMHMRHKFDIDTHLVEGLVLDHGARHPDMKKRVENCYILTCNVSLEYEKSEVNAGFFYSNAEQREKMVLAERRQVDEKIQKIINLKKKVCDGTDNNFVVINQKGIDPMSLDLLAREGIVALRRAKRRNMERLVLACGGDAVNSVDDLTPNVLGWAGLVYEHVLGEEKYTFVENVRNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTLEDRSVVLGAGAFEVAASQHLKHNVKKTVQGRAQLGVEAFADALLVVPKTLAENSGLDTQDVLVGLQVEHDKGNIVGLNHHTGEPMDPYLEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRK
D5A7V5______________MVEIMHMRHKFDIDTHLVEGLVLDHGARHPDMKKRVENCYIFTCNISLEYEKSEVNAGFFYSNAEQREKMVLAERRQVDEKIQKIINLKKKVCDGTDNNFVVINQKGVDPMSLDRLAREGIVALRRAKRRNMERLVLACGGEAVNSVDDLTPDVLGWAGLVYEHVLGEEKYTFVENVRNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTLEDRAVVLGAGAFEVAASQHLKNTVKKTVQGRAQLGVEAFADALLVVPKTLAENSGLDTQDVLVGLQMEHDKGNIVGLNQHTGEPMDPYLEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRK

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
67		50	50		1.0
74	25		75		0.996473
474	88			11	0.999937
1851		97		2	0.953846
2063	3			89	0.998304

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain