SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9313

Length: 1700 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9313

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	lanatoside 15'-O-acetylesterase [Digitalis lanata]	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	Esterase, putative	-	-	1.888e-17	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on ester bonds, Carboxylic ester hydrolases.	EC:3.1.1.-	-	8.761e-09	-

Source	KEGGs	Term	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053	8.761e-09	%
Sma3	Bisphenol degradation	00363	8.761e-09	%
Sma3	Glycerophospholipid metabolism	00564	8.761e-09	%
Sma3	Toluene degradation	00623	8.761e-09	%
Sma3	Aminobenzoate degradation	00627	8.761e-09	%
Sma3	Retinol metabolism	00830	8.761e-09	%
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	8.761e-09	%

Source	Gene names
Sma3	At1g67830; At3g26430; At4g01130; At5g14450; ENOD8; Enod8.1; Enod8.2; F12A21.4; F18O22.240; F20C19.19; F2N1.17; FXG1; GSVIVT00015390001; GSVIVT00015391001; GSVIVT00020633001; GSVIVT00020634001; GSVIVT00022552001; GSVIVT00022829001; GSVIVT00022875001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	alpha-L-fucosidase activity	GO:0004560	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	-
Sma3	IgE binding	GO:0019863	Molecular Function	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Histone H2A	IPR002119	-	-
Sma3	Lipase, GDSL, active site	IPR008265	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G01130.1	GDSL-like Lipase/Acylhydrolase superfamily protein chr4:485868-488007 FORWARD LENGTH=382	52%
RefSeq	Arabidopsis thaliana	NP_192022.1	GDSL esterase/lipase [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002320844.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0U3

Fln msg: your sequence is longer than subject: 397 - 326

Fln protein: MWAMASTAIERKVFHLEKWIVCGAAVVGLMIFCQVESSQGKCAFPAIFNFGDSNSDTGGFYAAFPAENPPYGMTFFHKPVGRASDGRLVIDFIAQAFGLPFLSPYLQSLGSDFRHGANYASDAGTVLQPNTSQYVTGISPFYLGVQYREMLDFKVRVLDLLSEGKKLEYLPNPEVFSQGLYTLDIGQNDFTSKLGEIGIQGVKQFLPQVASQIGETVKALYKEGARTIFVANLAPIGCFPSFLTELPHNQSDLDSYGCMISYNNAVVDYNNLLREQLEEVRKVLQDASVIYVDSHAIKLEIFTNPTKHGFKYGTKACCGTGGDYNFSPEVFCSQSKTLNGIVVTASACSDPSGYVSWDGIHNTDAANIYIANEILSGKYFQPPFPLSKLCDLQPIG*

Protein Length: 398

Fln nts: CGTCGTGACCTTGGCGTCACGCGGAAATTTGAGAGTTTTTCATTCTTATGCTGCGGTAAGCTTACAGGAAA_-_ATGTGGGCAATGGCTAGCACGGCCATCGAAAGAAAAGTATTCCATCTAGAGAAATGGATTGTTTGTGGTGCAGCAGTTGTGGGGCTGATGATATTCTGTCAAGTAGAAAGCAGCCAAGGGAAATGTGCATTTCCTGCAATTTTCAATTTCGGAGACTCGAATTCAGATACAGGTGGCTTCTATGCTGCTTTCCCTGCAGAAAATCCTCCCTATGGAATGACTTTCTTCCATAAGCCTGTAGGTCGTGCTTCTGATGGACGCCTTGTGATTGATTTCATAGCTCAAGCTTTCGGCCTGCCTTTTCTTAGTCCATATCTGCAGTCATTAGGCTCTGATTTTCGTCATGGGGCCAACTATGCCTCGGATGCTGGTACTGTTCTTCAACCAAATACTTCACAATATGTTACCGGAATCAGCCCTTTCTACTTGGGAGTTCAGTACAGGGAGATGCTGGATTTCAAGGTTCGAGTTCTTGATCTTCTTTCAGAAGGAAAAAAATTGGAGTATCTACCAAACCCTGAGGTATTCAGTCAAGGTCTCTACACACTTGATATTGGGCAGAATGATTTCACCTCAAAACTTGGTGAAATAGGAATTCAAGGAGTGAAGCAGTTTCTTCCCCAGGTAGCTTCACAGATTGGTGAAACTGTTAAGGCATTGTATAAAGAAGGGGCAAGGACAATATTTGTGGCAAATCTTGCACCAATCGGTTGCTTTCCTTCATTTCTGACTGAACTTCCTCATAATCAATCTGATCTGGACAGTTATGGATGTATGATATCATACAACAATGCAGTGGTGGACTATAATAACCTACTTAGGGAGCAGCTTGAAGAAGTTCGAAAGGTCTTACAGGATGCATCTGTTATATATGTTGATTCACATGCGATCAAGTTGGAGATTTTTACAAATCCAACGAAACATGGGTTCAAGTATGGAACAAAGGCCTGCTGTGGCACTGGAGGTGACTACAATTTTAGTCCAGAGGTTTTCTGCAGCCAAAGCAAGACATTAAATGGTATTGTTGTCACAGCTTCAGCATGTTCTGATCCATCAGGTTACGTGTCCTGGGATGGAATTCATAACACTGATGCTGCAAATATATATATAGCCAATGAAATTCTCAGTGGTAAATACTTTCAGCCACCATTTCCACTCAGCAAACTTTGTGATCTCCAACCTATTGGGTGA___ACTTGAGGACGAAAAGAAGCTCCATATGCTATGGAAAAAATGTATTCAATAAAGCCTTCACTTCCAAGGCCTCTCAATTCAATAGAGTTACTGATAAGCAGCATGGGCTTTGTCAATTATTAAGCCATCATGAGTTTTGGCTCTTTTTCAATTAGTCGTATTCTCTCACTCACATAATATTAATGTGCTTGGGTCATGTTTAATTCACCCTTATGGTGACCATTTGATCAATATTAAAAAATCAATTGTATCCAAGGAGGATGGGAACAAATGTTTTCAGATTGAATCAATGTCAGTGCTGTTGGGTATGATTCTTGTTGCTCATTTGGGTAGGCAGATTCAGTTGAACTTCTAAAACAAATCTGAGATAACTTGCATTTGTAAACTCTTCCAAATATTTTTATAAATGAAATTTTGTGAGATATTGTTGATTCCAAA

Fln Alignment:

Contig9313___MWAMASTAIERKVFHLEKWIVCGAAVVGLMIFCQVESSQGKCAFPAIFNFGDSNSDTGGFYAAFPAENPPYGMTFFHKPVGRASDGRLVIDFIAQA--FGLPFLSPYLQSLGSDFRHGANYASDAGTVLQPNTSQYVTGISPFYLGVQYREMLDFKVRVLDLLSEGKKLEYLPNPEVFSQGLYTLDIGQNDFTSKLGEIGIQGVKQFLPQVASQIGETVKALYKEGARTIFVANLAPIGCFPSFLTELPHNQSDLDSYGCMISYNNAVVDYNNLLREQLEEVRKVLQDASVIYVDSHAIKLEIFTNPTKHGFKYGTKACCGTGGDYNFSPEVFCSQSKTLNGIVVTASACSDPSGYVSWDGIHNTDAANIYIANEILSGKYFQPPFPLSKLCDLQPIG
A9P0U3______________MWVIESMTIERKIFHVEKWIVCAAAVVGLMIFCQVESSQGKC--------------------AFPA--------IFNFGDSNSDTGGFYAAFPAESPPYGMTF-----------FNKPAGRASDG------------------------RLVVDFL---------GKNLEYLPTPEVFSQALYTLDIGQNDFTSRLGEIGIQGVKQFLPQVASQIGETVKALYGEGARTIFVANLAPIGCFPSFLTELPHNQSDLDSYGCMISYNSAVVDYNNLLREKLEEVRKVLPNASVIYVDSHAIKLEIFTNPTKHGFKYGTKACCGTGGDYNFSPQVFCSQSKKLNGTVVTASACSDPSSYVSWDGVHNTDAANIYIANEILSGKYFQPPFPLSTLCDLQPIG

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1301	84			15	0.999986
1466			12	87	0.992554
1468	12	87			0.992554
1477	11		88		0.923564
1478		11	88		0.923564
1480			88	11	0.923564
1635	12			87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain