SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9276

Length: 1475 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9276

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase family protein [Arabidopsis thaliana] gb\|AAK43919.1\|AF370600_1 putative protein kinase [Arabidopsis thaliana] gb\|AAB80675.1\| putative protein kinase [Arabidopsis thaliana] gb\|ACI49790.1\| At2g33580 [Arabidopsis thaliana] gb\|AEC08855.1\| prote	-	-	0.0	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%

Source	ECs	Term	Type	e value	Identity
Sma3	Receptor protein-tyrosine kinase.	EC:2.7.10.1	-	5.427e-08	-

Source	Gene names
Sma3	At2g23770; At2g33580; At2g33580/F4P9.35; CERK1; GSVIVT00002969001; GSVIVT00014691001; GSVIVT00015961001; GSVIVT00020114001; GSVIVT00025016001; GSVIVT00025017001; LYK4; LYK7; LYK8; OSJNBa0029G06.34; OSJNBa0029G06.37; OSJNBa0072A21.3; OSJNBa0072A21.6; Os02g

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Immunoglobulin-like	IPR007110	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G33580.1	Protein kinase superfamily protein chr2:14219848-14221842 REVERSE LENGTH=664	51%
RefSeq	Arabidopsis thaliana	NP_180916.1	protein kinase family protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002307830.1	predicted protein, partial [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ73

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 395 - 536

Fln protein: RGFELALVSESPPPWRW*RR*QLAVFIQKKENSPAPPGAVEL*ADETRIRRGKGGAKALHDDLVVGIQELGQTLPQYKLEELEAATANFNPANRIAGSVYRGVIDETPVAVKQIQGDVSQQIGILQKLKHFNVVHLSGFCVTESRSYLVFEYADNGSLADCLQSNSVLGLNWRQRLEIDLDVANGLAYLHNFAVPAYVHKDIKSSNVLLDRNFRAKIANFGLAKSAGEGFAVTRHVVGTKGYMAPEYVGQGLVTPKLDVFAFGVVMLELLSGKPAVIRGNGDVHTEVMLWTTIGALVEGSNPKEKLKGFMDPALKDEYPLDVAFAMAELARACVNEDLNRRASINEIQMSLSAWLSDSSHSRDLESADSYSNSSSFKVIQRAFSKSEQSHGNST*

Protein Length: 396

Fln nts: CCAGGGGCTTCGAGTTGGCCTTGGTGTCGGAATCGCCGCCGCCGTGGCGGTGGTAACGGCGGTGACAGTTGGCTGTATTTATTCAGAAGAAAGAGAACTCACCGGCGCCGCCCGGAGCAGTCGAGCTCTGAGCCGATGAAACCAGAATTCGCCGCGGAAAAGGCGGGGCAAAGGCGTTGCACGACGATCTGGTTGTCGGAATTCAAGAACTGGGGCAAACCTTACCTCAGTACAAATTGGAGGAACTGGAAGCAGCCACGGCGAATTTCAACCCGGCGAACAGAATCGCCGGTTCTGTCTACCGCGGCGTCATCGACGAAACGCCGGTGGCCGTGAAGCAGATTCAGGGTGACGTCTCTCAGCAAATTGGGATTCTTCAAAAGCTGAAGCATTTCAATGTGGTGCACCTCTCGGGGTTCTGTGTGACGGAAAGCCGTTCATATCTGGTATTCGAGTATGCCGACAATGGCTCACTCGCCGACTGTTTACAGAGCAATTCGGTGCTTGGTCTGAACTGGCGGCAGAGACTGGAAATCGATCTGGATGTGGCAAATGGGCTCGCTTATCTTCACAATTTTGCCGTTCCGGCTTACGTCCACAAGGACATAAAGAGCAGCAATGTTTTGCTCGACAGGAATTTCCGCGCCAAGATTGCCAATTTCGGTCTGGCGAAATCCGCAGGCGAGGGTTTTGCCGTGACCAGACATGTGGTGGGCACGAAAGGATACATGGCGCCGGAATATGTTGGGCAGGGTCTCGTCACGCCGAAGCTCGACGTCTTCGCCTTTGGTGTGGTCATGCTGGAGCTTCTCTCTGGCAAACCCGCGGTTATCCGCGGAAATGGAGATGTGCACACGGAAGTTATGCTGTGGACTACAATTGGGGCTTTGGTCGAGGGTTCGAATCCCAAGGAGAAGCTCAAGGGTTTCATGGATCCGGCACTGAAGGATGAGTATCCGTTGGATGTGGCGTTCGCCATGGCAGAGCTGGCCAGGGCGTGCGTTAATGAGGATTTGAATCGCCGGGCAAGCATTAACGAGATTCAGATGAGTCTGTCCGCATGGCTATCTGATTCTTCTCATTCACGCGATCTGGAATCTGCAGATTCATATTCGAACAGCAGCAGCTTTAAGGTAATTCAAAGGGCTTTCTCTAAAAGCGAGCAAAGCCACGGGAATTCCACATAG___GTCACATTTTCTTGGTAACCTCCATTGATGGAATCTACCGTCTCAGATCTGATGAGGTTATTAAAAGGACATGAATTCTAAATGATTGACGTCTATGAATTTCTGCAATGGTTAAAGAAAATGATTCTGATGCTCGGCTCAAGTTGGCTTTCTCTGTTACTTTTCAAGAGGATGTGATTTTGGTTATCTGGTTTGAGTTTTGCAGATTAATGAACTCATGAATTTTGTACTGTGGGCATTTATAAATCTATAAGACAGGAATAAGAGGTGTTTATGAATTTTGTATAG

Fln Alignment:

Contig9276___LVVGIQELGQTLPQYKLEELEAATANFNPANRIAGSVYRGVIDETPVAVKQIQGDVSQQIGILQKLKHFNVVHLSGFCVT-ESRSYLVFEYADNGSL------ADCLQSNSVLG-----LNWRQRLEIDLDVANGLAYLHNFAVPAYVHKDIKSSNVLLDRNFRAKIANFGLAKSAGEGFAVTRHVVGTKGYMAPEYVGQGLVTPKLDVFAFGVVMLELLSGKPAVIRGNGD--VHTEVMLWTTIGALVEGSNPKEKLKGFMDPALKDEYPLDVAFAMAELARACVNEDLNRRASINEI
B8LQ73______________LMTGISDCVENPFMYSIEDLDKATQNFSPLCNIEGSVYKGTLDGRDYAIKLMKGDISQELKILQKVNHTNLVKLEGVCISSEGQSYLVYEYIENSSLNTWLHDPESVENMSPIGWSSSSLPWKTRLQVALDVANGLQYIHEHTTPSVVHKDIKSSNILLDGNFRAKIANFGMAKSGIN--ALTKHIMGTQGYMAPEYLADGFVSPKLDVFAFGVVLLEMISGKEAIVRERGVPLAGKAGLLWTQIRPLLEGEDIEGKLRKWVDRNLQNAYTMDSILGVATIARACVEEDPVARPTLPEI

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
228	20	80			0.995493
229	80		20		0.995493
323	16	16	66		0.988813
350		16		83	0.994512
384		83	16		0.994512
410		83	16		0.994512
425			83	16	0.994512
428	16		83		0.994512
457	60			40	1.0
473	60		40		1.0
484	33		66		0.997452
490	66			33	0.997452
496	66	33			0.997452
498			33	66	0.997452
776		80		20	0.995493
1112			40	60	1.0
1127	20	80			0.995493
1135		25		75	0.996473
1243	40		60		1.0
1291		80		20	1.0
1349		23		76	1.0
1358			85	15	1.0
1420	9		90		0.999872

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain