SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9223

Length: 1291 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene9223 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNAJ heat shock N-terminal domain-containing protein-like [Oryza sativa Japonica Group] gb\|EEC74039.1\| hypothetical protein OsI_09017 [Oryza sativa Indica Group]	-	-	3.0e-37	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	Identity
Sma3	heat shock protein binding	GO:0031072	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G16650.1	Chaperone DnaJ-domain superfamily protein chr5:5463446-5465075 REVERSE LENGTH=128	1.0e-39	67%
RefSeq	Arabidopsis thaliana	NP_197168.1	chaperone DnaJ-domain containing protein [Arabidopsis thaliana]	1.0e-39	67%
RefSeq	Populus trichocarpa	XP_002302333.1	predicted protein [Populus trichocarpa]	0.0	66%

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
312		12		87	0.992554
379		37		62	1.0
424			12	87	0.992554
425	87			12	0.992554
427	62		37		1.0
793	90		10		0.90298
804		10	90		0.90298
807	10	90			0.90298
1011	87		12		0.992554
1158	13		86		0.999973
1162		6		80	0.999961
1229		11	88		0.923564
1230		11		88	0.923564
1231	88	11			0.923564
1232	88	11			0.923564
1243		12	87		0.992554
1244		12	87		0.992554
1248		87		12	0.992554
1272	71	28			1.0
1273	40	60			1.0
1274	60	40			1.0
1275	40	40		20	1.0
1276	80			20	0.995493
1277			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain