SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8957

Length: 2473 nt

UniGene Fasta

>sp_v3.0_unigene8957
ATGGGAGAAAAAGAAACCAGTGAAGAAATCAAATGGGAAAATGAATGAATTGACCAGAAGGTGCATTATTATCGAATGACGACTCCACCAAGTGGAGTTCTGAGAGCCATGAGGGAACCGTAAATAGATTGATTTGAAAGTCAACACTGACCCACATCAGAGTTGGTGTTGAACATGATTTGCAGAGCAGAAATGGGAGGGAAATGCAGAGTGGAGGTTCACATCTTCTACCATTCATTGACCCAACAGAGCACGGAGGCCAAGAGAAGTTGGAATACAGGAGGACGTGGAGAACGAGAGATAGGAGTATTGGGTTTTGATCTATTTCCTGTCCATCGGGCCTCTGGGTAGCAAGCATACCAGAGATTTGACGAAGAGGGATGGTTTGGGCATGGATAAGAAGGGATCTTGTTTCAGTGCCTTGAAATGGGCATTTTGTGCTAAACAACAATCCCATACAAAAAAGCAAGGGAAGAAGAAAGGGGGATGTTGTTTTGGAAGCTTCAGAAATCATGAACCTGCCACGCCAAAGGAAGATACCAGGGTAAACAAAACATTGGAGGAAGGCCAACAGATACAAAATAAACATGAGAAACCATTGGTTGAAGTCAAAGAGGAACAAAGTAGTCATTCATCTGCAGTGGCAGTTGCAACAGCTGCTGCTGCAGAGGCAGCGGCTGCAGCTGCTCATGCTGTTGCCAAGGTTGTGCGTCTTACAGAGTCCTATTACTCTTCCAATTCCCCTGAAGAATGTGCAGCCATCAAAATTCAGACTGCATTTCGGGGTTATCTGGTTAGGAGAAACTTCCACACTCTCAGGGGTCTCATGAGACTGCAAACACTGGTGCAGGGCCAGAGTGTGCGGCGTCAAGCAACAAATACCATGCGCTGCATGCAAGCGCTTGTTAGAGTGCATTCACAAATCTGCTCCAGGAGAATTCGCATGTTTGAGGAAAATCAAGCTCTTCAACACCACCTTCAGCAGAAACGTGAAAAAGAACTCGAGAACAGGACATCTAATTCTGATGCTGATCATCAACAAGATTGGGACAACAGCATGCTAACCAAGGAAGAAATTGAGGCTAGACTGCAAAGCAAAATAGAGGCTGCTATTAAGCGAGAGAGGGCATTGGCCTATGCATTTTCTCATCATTTATGGAAGAATCCTCCAAAATCAGTCCAGACCATGTTGATGGAGATTGATCTCGAGAAGCCTCATTGGGGATGGAGCTGGTTAGATCGTTGGATGGCAACTAGGCCATGGGACAACCACAGGATGACCATGAAGGAAAATTCTAACAGGAAGCTTCAAACTATAGGTGAGATTGGACAAAAAACTTCACATATAGAGTTAAAGCAGCATAATGCAGAATTAACCAACATTGGTACCATAAAATCTGATCCATTTACTCCCCTTTCAAAATCCTCCTTACCAAACAAGATGCCATCGATGAGGACAGAAACAAAGAGCGATGACAATGTTTTGAGGTCAGAAAGAACAAGATACAGCTTTCGTAACGGTGTAGCAGGTACATCTTCTATGAGAGACGATGAAAGCCTTATGAGCTCTCCTAGAATTCCTAACTACATGGCATCTACAGAGTCTGCCAAAGCAAAGGTCAGATCACTGAGTACTCCAAAACAGAGGCCCGGGACTCCTGACACAGAGTCTATTTCAAATAGAAGGAAAAGGCTATCTTTTCCTTTGTCAGAGGCCAGTTCAGGCCCATATAAGTCCACTAAAGGCTCCATGTTTCCTCACACAAGTCCCAATTTGAAAGGGCTTTCAGGACCATCGAAATCAAAGAAGTCTGTCAGTTCTTTGAAAGATCTTAGTATTGAATCAGACAATTCCTCTCTGACCTGGGGTAACAGAAGACCTTTTAGATAAGTATTTGTCTAGGTACATGCCTCAACTACTATAATCTGGATTGACGTTGCTGGCATGGTAGAGGAGATATATTTTTTACAGAATTATAAAAGGTTGCTCAGGTGGGATGAGCTTGGAAGTTGGGTGTACTAGCCTCTTCTGGATTCCAGTGATATATATTTCTATTTGATATTTTAGCTAAAGTGATCTGCTTGCAATAAGAGATTTACAGACACCTGGGAAAATCTCATTTCATTGAGACTGCATGCTGGGCATTGTCACGATTTGGGAGGGCTACAAAGCCATAGAAGGGTATCTTACTGGTTTCCAAGTATGTTATCATAGGTTTGGCAAGGGTTCAGAGTGGATTCACAAAGAGATAAAATTAACGTTGTTAGTAATTTGTACTTAGAAGACTGTATTAAGGATTGTTATAAATTCAGGAGAAATATTTAATTTAAAGGGATTCAGTCATTGCATGAGGTCGGATGCCTAAATTGTGAAGGCATTTCTTCCTGTCATTGGCTGAAAACTGTCGAGTGCTTTGACTTTGTGTTGGATTTTAACATCAACGATTAATCACATTGTGCACCTTTTGAAACC

Ace file of the UniGene sp_v3.0_unigene8957

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002315283.1	predicted protein, partial [Populus trichocarpa]	0.0	49%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV67

Fln msg:

Fln protein: MDKKGSCFSALKWAFCAKQQSHTKKQGKKKGGCCFGSFRNHEPATPKEDTRVNKTLEEGQQIQNKHEKPLVEVKEEQSSHSSAVAVATAAAAEAAAAAAHAVAKVVRLTESYYSSNSPEECAAIKIQTAFRGYLVRRNFHTLRGLMRLQTLVQGQSVRRQATNTMRCMQALVRVHSQICSRRIRMFEENQALQHHLQQKREKELENRTSNSDADHQQDWDNSMLTKEEIEARLQSKIEAAIKRERALAYAFSHHLWKNPPKSVQTMLMEIDLEKPHWGWSWLDRWMATRPWDNHRMTMKENSNRKLQTIGEIGQKTSHIELKQHNAELTNIGTIKSDPFTPLSKSSLPNKMPSMRTETKSDDNVLRSERTRYSFRNGVAGTSSMRDDESLMSSPRIPNYMASTESAKAKVRSLSTPKQRPGTPDTESISNRRKRLSFPLSEASSGPYKSTKGSMFPHTSPNLKGLSGPSKSKKSVSSLKDLSIESDNSSLTWGNRRPFR*

Protein Length: 501

Fln nts: ATGGGAGAAAAAGAAACCAGTGAAGAAATCAAATGGGAAAATGAATGAATTGACCAGAAGGTGCATTATTATCGAATGACGACTCCACCAAGTGGAGTTCTGAGAGCCATGAGGGAACCGTAAATAGATTGATTTGAAAGTCAACACTGACCCACATCAGAGTTGGTGTTGAACATGATTTGCAGAGCAGAAATGGGAGGGAAATGCAGAGTGGAGGTTCACATCTTCTACCATTCATTGACCCAACAGAGCACGGAGGCCAAGAGAAGTTGGAATACAGGAGGACGTGGAGAACGAGAGATAGGAGTATTGGGTTTTGATCTATTTCCTGTCCATCGGGCCTCTGGGTAGCAAGCATACCAGAGATTTGACGAAGAGGGATGGTTTGGGC_-_ATGGATAAGAAGGGATCTTGTTTCAGTGCCTTGAAATGGGCATTTTGTGCTAAACAACAATCCCATACAAAAAAGCAAGGGAAGAAGAAAGGGGGATGTTGTTTTGGAAGCTTCAGAAATCATGAACCTGCCACGCCAAAGGAAGATACCAGGGTAAACAAAACATTGGAGGAAGGCCAACAGATACAAAATAAACATGAGAAACCATTGGTTGAAGTCAAAGAGGAACAAAGTAGTCATTCATCTGCAGTGGCAGTTGCAACAGCTGCTGCTGCAGAGGCAGCGGCTGCAGCTGCTCATGCTGTTGCCAAGGTTGTGCGTCTTACAGAGTCCTATTACTCTTCCAATTCCCCTGAAGAATGTGCAGCCATCAAAATTCAGACTGCATTTCGGGGTTATCTGGTTAGGAGAAACTTCCACACTCTCAGGGGTCTCATGAGACTGCAAACACTGGTGCAGGGCCAGAGTGTGCGGCGTCAAGCAACAAATACCATGCGCTGCATGCAAGCGCTTGTTAGAGTGCATTCACAAATCTGCTCCAGGAGAATTCGCATGTTTGAGGAAAATCAAGCTCTTCAACACCACCTTCAGCAGAAACGTGAAAAAGAACTCGAGAACAGGACATCTAATTCTGATGCTGATCATCAACAAGATTGGGACAACAGCATGCTAACCAAGGAAGAAATTGAGGCTAGACTGCAAAGCAAAATAGAGGCTGCTATTAAGCGAGAGAGGGCATTGGCCTATGCATTTTCTCATCATTTATGGAAGAATCCTCCAAAATCAGTCCAGACCATGTTGATGGAGATTGATCTCGAGAAGCCTCATTGGGGATGGAGCTGGTTAGATCGTTGGATGGCAACTAGGCCATGGGACAACCACAGGATGACCATGAAGGAAAATTCTAACAGGAAGCTTCAAACTATAGGTGAGATTGGACAAAAAACTTCACATATAGAGTTAAAGCAGCATAATGCAGAATTAACCAACATTGGTACCATAAAATCTGATCCATTTACTCCCCTTTCAAAATCCTCCTTACCAAACAAGATGCCATCGATGAGGACAGAAACAAAGAGCGATGACAATGTTTTGAGGTCAGAAAGAACAAGATACAGCTTTCGTAACGGTGTAGCAGGTACATCTTCTATGAGAGACGATGAAAGCCTTATGAGCTCTCCTAGAATTCCTAACTACATGGCATCTACAGAGTCTGCCAAAGCAAAGGTCAGATCACTGAGTACTCCAAAACAGAGGCCCGGGACTCCTGACACAGAGTCTATTTCAAATAGAAGGAAAAGGCTATCTTTTCCTTTGTCAGAGGCCAGTTCAGGCCCATATAAGTCCACTAAAGGCTCCATGTTTCCTCACACAAGTCCCAATTTGAAAGGGCTTTCAGGACCATCGAAATCAAAGAAGTCTGTCAGTTCTTTGAAAGATCTTAGTATTGAATCAGACAATTCCTCTCTGACCTGGGGTAACAGAAGACCTTTTAGATAA___GTATTTGTCTAGGTACATGCCTCAACTACTATAATCTGGATTGACGTTGCTGGCATGGTAGAGGAGATATATTTTTTACAGAATTATAAAAGGTTGCTCAGGTGGGATGAGCTTGGAAGTTGGGTGTACTAGCCTCTTCTGGATTCCAGTGATATATATTTCTATTTGATATTTTAGCTAAAGTGATCTGCTTGCAATAAGAGATTTACAGACACCTGGGAAAATCTCATTTCATTGAGACTGCATGCTGGGCATTGTCACGATTTGGGAGGGCTACAAAGCCATAGAAGGGTATCTTACTGGTTTCCAAGTATGTTATCATAGGTTTGGCAAGGGTTCAGAGTGGATTCACAAAGAGATAAAATTAACGTTGTTAGTAATTTGTACTTAGAAGACTGTATTAAGGATTGTTATAAATTCAGGAGAAATATTTAATTTAAAGGGATTCAGTCATTGCATGAGGTCGGATGCCTAAATTGTGAAGGCATTTCTTCCTGTCATTGGCTGAAAACTGTCGAGTGCTTTGACTTTGTGTTGGATTTTAACATCAACGATTAATCACATTGTGCACCTTTTGAAACC

Fln Alignment:

Contig8957___MDKKGSCFSALKWAFCAXXXXXXXXXXXXXXXCCFGSFRNHEPATPKEDTRVNKTLEEGQQIQNKHEKPLVEVKEEQSSHSSXXXXXXXXXXXXXXXXXXXXXXXXRLTESYYSSNSPEECAAIKIQTAFRGYLVRRNFHTLRGLMRLQTLVQGQSVRRQATNTMRCMQALVRVHSQICSRRIRMFEENQALQHHLQQKREKELENRTSNSDADHQQDWDNSMLTKEEIEARLQSKIEAAIKRERALAYAFSHHLWKNPPKSVQTMLMEIDLEKPHWGWSWLDRWMATRPWDNHRMTMKENSNRKLQTIGEIGQKTSHIELKQHNAELTNIGTIKSDPFTPLSKSSLPNKMPSMRTETKSDDNVLRSERTRYSFRNGVAGTSSMRDDESLMSSPRIPNYMASTESAKAKVRSLSTPKQRPGTPDTESISNRRKRLSFPLSEASSGPYKSTKGSMFPHTSPNXXXXXXXXXXXXXXXXXXXXXIESDNSSLTWGN
A9NV67______________MDKKGSCFSVLKWAFCAKQKSHATKQGKKKGGCCFGSFRHHEPAAPKEDTRVKKTLGEGQEIRNEHEKPLVEVKEEQNSHASAVAVATAAAAEAAAAAAHAVAKVVRLTESYYSTNSPEECAAIKIQTAFRGYLVRRNFHTLRGLMRLQALVQGQSVRRQATNTMRCMQALVRVHSQICSRRIRMFEENQALQHHLQQKYEKELENRTSNSEADHQQDWESSLLTKEEIEARLQSKIEAAIKRERALAYAFSHHLWKNPPKSVQTMLMEIDPDKPHWGWSWLERWMATRPWDNHRMTMKENSTRKLQTIGEIGQKTSHIGLKQHNAEVTNIGTIKSDPFTPLSKPSIPNKMPLTGTDIKSDVNVLRSERPRYSSRYGVAGTSSLRDDESLMSSPRIPNYMASTESAKAKVRSQSTPKQRPGTPDTEPTSYRRKRLSFPLSEASSGPYRSTKGSMFPHTSPSLKGISGTSKSKKSVSSLRDLSIESDNSSLNWGH

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
1353	12			87	0.992554
1354		12		87	0.992554
1356	87			12	0.992554
1357	87			12	0.992554
1371	14		85		0.993533
1372	85	14			0.993533
1593	10		90		0.90298
1839	20		80		0.995493
1929		16		83	0.994512
1931			83	16	0.994512
1932	83	16			0.994512
1933			16	83	0.994512
1938		20	80		0.995493
1945			80	20	0.995493
1949		20	80		0.995493
1950	20		80		0.995493
1993			87	12	0.992554
1995			12	87	0.992554
2068	62			37	1.0
2260	87			12	0.992554
2320	80		20		0.995493
2387		90		10	0.90298
2389			90	10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain