SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8807

Length: 1516 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8807

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GATA transcription factor 21 [Arabidopsis thaliana] sp\|Q5HZ36.2\|GAT21_ARATH RecName: Full=GATA transcription factor 21 dbj\|BAA97205.1\| unnamed protein product [Arabidopsis thaliana] gb\|ABG25059.1\| At5g56860 [Arabidopsis thaliana] gb\|AED96815.1\| GATA trans	-	-	4.0e-11	45%
FL-Next	sp=GATA transcription factor 20; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	42%
Sma3	GATA transcription factor 19	-	-	3.279e-09	-

Source	Gene names
Sma3	At3g50870; At4g36620; NL1; OJ1126_B10.17; OSJNBa0006A22.6-1; OSJNBa0017N18.4; Os05g0578900; Os06g0571800; OsI_21119; OsI_23438; OsI_23440; OsJ_19663; OsJ_21757; P0610D01.14-1; POPTRDRAFT_653902; POPTRDRAFT_828052;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	0.0	-
Sma3	Zinc finger, NHR/GATA-type	IPR013088	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002330240.1	predicted protein [Populus trichocarpa]	1.0e-14	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9ZPX0

Fln msg: your sequence is longer than subject: 347 - 208

Fln protein: MESEDDPTAAAPPEGGVLLRNKPTYAVNCSPLELRGSCSPPSSSSVRMDGMKTVSENNNIKKKARCLSERSSQHKCELDYTLAIGVGVGMSGASSEENKDVVSDGFFDDKYHKFMEPVSNSTGLEDAQPFNHMNSNSPRAVTRVCTDCKTVKTPLWRNGPQGPKSLCNACGIRYKKLGKRPTGNLERPSSPPTPPISPTAKQIIKLTKRKREGEAGKTKQQPQDAAAAVSQHHPRKKIKTTSMMERWSGGRLDRAAMGPGSLSLSSPSRSQAEAPESPRLEQSEGEYYAEERNRNGSGRGEALRRWREVERIKRGLLRYGKIRSLAKDEEEGAVLLMALSCGVASC*

Protein Length: 348

Fln nts: AATGTATGTTGTTCTGATAGAACTGGTTGAGCACGCGTGGGATTTAGGGAAAAAATAACAGAGATAAACAAAGGTTAGCGATGTTTCAGGCGCCGCCGCTGCTGCTTATTATTCGACGCCCGTCTACGGGCACAGCCATTACAAGAAGTTCTGGCTCAAGAAA_-_ATGGAGTCGGAAGACGATCCGACCGCCGCAGCGCCTCCCGAGGGCGGTGTTTTGCTGCGGAACAAGCCAACGTATGCTGTGAATTGTTCGCCGCTGGAGCTGAGAGGGAGTTGTTCTCCTCCGTCTTCTTCTTCAGTCAGAATGGACGGCATGAAGACCGTCTCGGAGAATAATAATATCAAGAAGAAGGCGAGGTGCCTGTCTGAAAGAAGCTCGCAGCACAAATGCGAGCTCGATTACACGCTTGCAATAGGCGTGGGCGTGGGAATGAGCGGCGCGAGCTCAGAGGAGAACAAGGATGTTGTTTCGGACGGCTTCTTTGATGATAAATATCATAAATTCATGGAGCCTGTGAGTAATTCAACGGGGCTGGAAGATGCACAGCCGTTTAATCATATGAACAGCAACAGTCCCCGGGCTGTGACGAGAGTGTGCACTGATTGCAAGACCGTCAAGACTCCGCTATGGCGAAACGGGCCGCAGGGACCCAAGTCTCTGTGTAATGCTTGCGGAATACGGTACAAGAAGTTGGGGAAGCGCCCAACAGGCAACTTAGAACGCCCATCCTCACCACCAACGCCGCCAATTTCTCCCACGGCCAAGCAGATCATCAAACTTACCAAGCGCAAGAGGGAAGGCGAGGCGGGGAAGACGAAGCAGCAACCGCAGGATGCCGCCGCCGCCGTCTCACAGCATCACCCGCGCAAGAAAATTAAGACAACGTCGATGATGGAAAGATGGTCCGGTGGGCGGCTCGATCGGGCCGCCATGGGACCGGGCTCTCTATCTTTGTCCTCTCCTTCACGATCGCAGGCGGAGGCTCCCGAGTCTCCGCGGCTGGAACAGTCTGAAGGTGAATATTATGCCGAGGAGCGGAATCGAAACGGCAGCGGTCGGGGAGAGGCGCTGAGGCGGTGGCGCGAGGTGGAGAGAATAAAGAGAGGGCTTCTTAGGTACGGCAAGATTAGATCCTTGGCTAAAGACGAGGAAGAAGGGGCCGTTCTTCTCATGGCCCTGTCCTGTGGCGTTGCCTCCTGTTAA___AGGTTTTTGTGTAGATTACACAGCAGAATCAATGATTTAATTACAACAACCCTCAAGTATATACAGCAAAACATTAACATTTGATGTAAGAAGCAAAATATGCACTGTTGTAAACATAGACAGATCATGTTTTTTCCGGCTTTGTGCTCTGTGAAATTCATGTAAAAAGTGGAGTAGTTAAGTCTTTATTATTATTGTTCCTTCTGAAAGGTGTTTTGAATTTGTATCTCAGCAAATGTTATGAAAGATCTCCGTAATTAAAGCGCAAATGGTTGCAAATACTTCTCCGATTTGATTTTGTGCTAGATCTTT

Fln Alignment:

Contig8807___DKYHKFMEPVSNSTGLE------DAQPFNHMNSNSPRAVTRVCTDCKTVKTPLWRNGPQGPKSLCNACGIRYKKLGKRPT
Q9ZPX0______________DDHHRFSSANSNNISGDFYIHGGNAKTSSYKKGGVAHSLPRRCASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEERRAT

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1165		20		80	0.995493
1223	80			20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
836	848	GCC GCC GCC GCC G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain