SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8803

Length: 2143 nt

UniGene Fasta

>sp_v3.0_unigene8803
CGTCGTGACCTTGGCTGTCACTCAGTTGTTAGGTCAGTATGCATGGTATTTACTTTTTGATTTCTCTTATCTGGGCCTACAAATCCAACGTCGTGACCTTGGCTGTCACTCAAGTTTGCTTACACAATTTCCCTATGTGAGGCCACAAAATGGTTTTCTTTGGTGTCCAAGGGCTATCGGACAACGCAGTTCTTCAAATGGGCGAAAATTCTCTTACAAGATTTATGAATTGGGTGTCGGAGACTTGCCAATTTTCATGAATTGGGTGTCGGACACTCAGCAATTTTCATGAATTGGGTGTGGGAGATTTGCTGGTTTTAGGAACAGGGTGTGGGAGATTTCTTGAGTTTGTGAGTTGGGTACCGGGGTTTTGTAGATTTTGTGAATTGTAGTTTTGCTGAAGCTGTGGGAATTTGTAGGAATAGATCTTTGAAGATGTGAGAATTTAGGGATTGGGATGCATTGCATTGGTCCAGAGGTTTATCAGTGTCGTATATTTGTAAGAGTCTGAAGGGTGGAATACAATGTTTTCAGTCTCTTGGTGTATGCCAGTAGTATTACCTACGCCTGTTGTTCGCTCAGGTAGAAGAAAAGACCGTTCTTTGTCCTGCACAATATCCATTTCTCCTAACAGGCAAAAGATCTCAAGAAAGCGAATAAGAAAATATGCAATAATCCAATGCAACAATAATGCACCGGGCATTCAGAATTCAACACCACCTCAGGCTGATGCTGGAGGCTTGTCCGGCCTCTCATTTGACAGATTACAACCTACTGATCAGGATTGTAAGACCCGACATAAAAGGACATTTGGCAAATTTGTTGCCCGAGAAGCCATTCTGGATGAAGAGTATTGGACAGCAGCATGGTTGCGTGCAGAGAGCCATTGGGAGGACCAGCCATATGTTCGTTATGTTGATAGCCACAAGAGAAAATTTGCAGAGCAGGAGTTCAATGCTTTAAAGCGACGGTGCTTTGGAAGAGATGGCCACTCCCTCAAGTGTTTCTGCATTGTTGCAGTCAAGAAGGAAGATAGAAATATAAGGCGCACAGTTTTGAATAGTGTGGTTGGTACTCTTGATTTAAGCATTCGACAGCTATTACAAGGAGAAACTTTTCCTGGGGAACATGTGGGAGCCTCTGTGTACATGAGCAGTAGCAAATCAGGGCATTCTCACCGATATGGCTATGTTGCAAATGTATGTGTTGCAAAGTTTGCTCGTAGGCAAGGGATAGCAAGCAACATGTTGCAACTGGCTGTTGAAATTGCTAAATCCTCTGGAGTGAAGGACGTTTTTATTCATGTAAATACTAACAACAAGGTTGCTCAGCAGCTGTACAAAAATATTGGATTTGAGATGGTTGAAGCAGCAGCATCTCGTCCATTAATAGATAAAATACAACTCCTATGCTTGAACACAGATTCTACGTTGTGTGTTTGATCGTCTTAACCTTGTGTTTCTTTTGGGACTGTCTATCTTCAATTTATTTCGAAAGATTTTTTAATCTGCCACAGTATGAATAGTTGAATGAAGGACCCAGAGAAGTAAACATACAAAGGATTTTGACTGTTATAAGAGCTGCACCTGGAAGAATTGTATATTGTTGAGAGGCTTTAAGATTGACATGTTGGATATATGCTGCTATATTCTGTCCTCACATGTATTATATTTTATTCAGCTGACTGGATAATACTTGATTGTACTGCAGCACATAGGATAGGCACATGGGTTGGCTAGTCTCAGCTTAGAATGTGCATGTAAATGACCAGCGAGAGTGAAAATCAATTCGAGTGGCAGAGTCTTTGGTTTCCTTTTGCTGAATGCTGAGCCTCTTCATAGGCATACCTAAGGTGTAACATCACCATTTTTGGGTGCTGTACATAATTTGTATGAACATTGTTGATTTTTGGTCAACGATGGTTCTAATATGATATTTGGTGCGATAGACATGGAAAATAGAAATATAAAGAAATATATTACTCACTCTGACTTTGAATGCATGAAATTAAGATAATAGTTTGAGTCCAGTCAGCACACCATAATGCAATATCATTTTTTATCATTATTTATTGTGCACAGAGGTGCTTACAGCCAGTATGACAGATGTTGTCACCTATCTAAATGGGTAACACTGACATGTT

Ace file of the UniGene sp_v3.0_unigene8803

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	-	-	4.0e-11	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%

Source	Gene names
Sma3	At2g06025; F5K7.26; GSVIVT00016450001; GSVIVT00017334001; LOC_Os03g07990; Os03g0177000; OsI_10235; OsJ_09628; POPTRDRAFT_589283; VITISV_041246;

Source	GOs	Term	Type	e value	Identity
Sma3	N-acetyltransferase activity	GO:0008080	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	GNAT domain	IPR000182	-	0.0	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G06025.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein chr2:2350231-2351898 FORWARD LENGTH=288	55%
RefSeq	Arabidopsis thaliana	NP_671784.2	acyl-CoA N-acyltransferases-like protein [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002326283.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD79

Fln msg: your sequence is longer than subject: 306 - 55

Fln protein: MFSVSWCMPVVLPTPVVRSGRRKDRSLSCTISISPNRQKISRKRIRKYAIIQCNNNAPGIQNSTPPQADAGGLSGLSFDRLQPTDQDCKTRHKRTFGKFVAREAILDEEYWTAAWLRAESHWEDQPYVRYVDSHKRKFAEQEFNALKRRCFGRDGHSLKCFCIVAVKKEDRNIRRTVLNSVVGTLDLSIRQLLQGETFPGEHVGASVYMSSSKSGHSHRYGYVANVCVAKFARRQGIASNMLQLAVEIAKSSGVKDVFIHVNTNNKVAQQLYKNIGFEMVEAAASRPLIDKIQLLCLNTDSTLCV*

Protein Length: 307

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGTTAGGTCAGTATGCATGGTATTTACTTTTTGATTTCTCTTATCTGGGCCTACAAATCCAACGTCGTGACCTTGGCTGTCACTCAAGTTTGCTTACACAATTTCCCTATGTGAGGCCACAAAATGGTTTTCTTTGGTGTCCAAGGGCTATCGGACAACGCAGTTCTTCAAATGGGCGAAAATTCTCTTACAAGATTTATGAATTGGGTGTCGGAGACTTGCCAATTTTCATGAATTGGGTGTCGGACACTCAGCAATTTTCATGAATTGGGTGTGGGAGATTTGCTGGTTTTAGGAACAGGGTGTGGGAGATTTCTTGAGTTTGTGAGTTGGGTACCGGGGTTTTGTAGATTTTGTGAATTGTAGTTTTGCTGAAGCTGTGGGAATTTGTAGGAATAGATCTTTGAAGATGTGAGAATTTAGGGATTGGGATGCATTGCATTGGTCCAGAGGTTTATCAGTGTCGTATATTTGTAAGAGTCTGAAGGGTGGAATACA_-_ATGTTTTCAGTCTCTTGGTGTATGCCAGTAGTATTACCTACGCCTGTTGTTCGCTCAGGTAGAAGAAAAGACCGTTCTTTGTCCTGCACAATATCCATTTCTCCTAACAGGCAAAAGATCTCAAGAAAGCGAATAAGAAAATATGCAATAATCCAATGCAACAATAATGCACCGGGCATTCAGAATTCAACACCACCTCAGGCTGATGCTGGAGGCTTGTCCGGCCTCTCATTTGACAGATTACAACCTACTGATCAGGATTGTAAGACCCGACATAAAAGGACATTTGGCAAATTTGTTGCCCGAGAAGCCATTCTGGATGAAGAGTATTGGACAGCAGCATGGTTGCGTGCAGAGAGCCATTGGGAGGACCAGCCATATGTTCGTTATGTTGATAGCCACAAGAGAAAATTTGCAGAGCAGGAGTTCAATGCTTTAAAGCGACGGTGCTTTGGAAGAGATGGCCACTCCCTCAAGTGTTTCTGCATTGTTGCAGTCAAGAAGGAAGATAGAAATATAAGGCGCACAGTTTTGAATAGTGTGGTTGGTACTCTTGATTTAAGCATTCGACAGCTATTACAAGGAGAAACTTTTCCTGGGGAACATGTGGGAGCCTCTGTGTACATGAGCAGTAGCAAATCAGGGCATTCTCACCGATATGGCTATGTTGCAAATGTATGTGTTGCAAAGTTTGCTCGTAGGCAAGGGATAGCAAGCAACATGTTGCAACTGGCTGTTGAAATTGCTAAATCCTCTGGAGTGAAGGACGTTTTTATTCATGTAAATACTAACAACAAGGTTGCTCAGCAGCTGTACAAAAATATTGGATTTGAGATGGTTGAAGCAGCAGCATCTCGTCCATTAATAGATAAAATACAACTCCTATGCTTGAACACAGATTCTACGTTGTGTGTTTGA___TCGTCTTAACCTTGTGTTTCTTTTGGGACTGTCTATCTTCAATTTATTTCGAAAGATTTTTTAATCTGCCACAGTATGAATAGTTGAATGAAGGACCCAGAGAAGTAAACATACAAAGGATTTTGACTGTTATAAGAGCTGCACCTGGAAGAATTGTATATTGTTGAGAGGCTTTAAGATTGACATGTTGGATATATGCTGCTATATTCTGTCCTCACATGTATTATATTTTATTCAGCTGACTGGATAATACTTGATTGTACTGCAGCACATAGGATAGGCACATGGGTTGGCTAGTCTCAGCTTAGAATGTGCATGTAAATGACCAGCGAGAGTGAAAATCAATTCGAGTGGCAGAGTCTTTGGTTTCCTTTTGCTGAATGCTGAGCCTCTTCATAGGCATACCTAAGGTGTAACATCACCATTTTTGGGTGCTGTACATAATTTGTATGAACATTGTTGATTTTTGGTCAACGATGGTTCTAATATGATATTTGGTGCGATAGACATGGAAAATAGAAATATAAAGAAATATATTACTCACTCTGACTTTGAATGCATGAAATTAAGATAATAGTTTGAGTCCAGTCAGCACACCATAATGCAATATCATTTTTTATCATTATTTATTGTGCACAGAGGTGCTTACAGCCAGTATGACAGATGTTGTCACCTATCTAAATGGGTAACACTGACATGTT

Fln Alignment:

Contig8803___MSSSKSGHSHRYGYVANVCVAKFARRQGIASNMLQLAVEIAKSSGVKDVF
D5AD79______________MSSSKLGRSHRYGYVANVCVSKFARRQGIASNMLQLAVEVAKSSGVKDVF

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
940	18			81	0.999994
944			81	18	0.999994
945	81			18	0.999994
1051		75		25	0.996473
1052	75			25	0.996473
1054	75			25	0.996473
1055			75	25	0.996473
1057			25	75	0.996473
1058			25	75	0.996473
1060			75	25	0.996473
1062	75			25	0.996473
1303			33	66	0.997452
1304		66	33		0.997452
1305	66		33		0.997452
1321		75		25	0.996473
1322	75		25		0.996473
1323	75		25		0.996473
1674	10			90	0.90298
1676			10	90	0.90298
1677	90		10		0.90298
1678			10	90	0.90298
1832			88	11	0.923564
1833		88	11		0.923564
1834		88	11		0.923564
1835			11	88	0.923564
1985		14		85	0.993533
2096		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain