SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8759

Length: 2316 nt

UniGene Fasta

>sp_v3.0_unigene8759
CGGGTAAAATTTGCAGAGATACTCCTATCGAGTGCTTAAAGCCGCGACCGGGTCGTTCGCCGAGGGGCAAAAGCTGGGCCAGGGCGGGTTTGGGGCGGTTTACAAGGGGAAATTGCGTAACGGAACGGAAATTGCCGTCAAGGTGCTGGATACCAATTCCGTGCAGGGCGAGCGCGAGTTTCAGAATGAGGTTTCCGTTATAGGAAAGGTCAGCTCGCCGCACATAGTGGGCCTCCTGGGTTTCTGCGCGGATCGGAAAAGAAAGCTTCTGGTTTATGAATTTATGCGGAATCGGAGCCTTCAAGATGCTCTGTTTGGTGATAAATATTCTGTGCAGCTCGACTGGAAGAAAAGATTCGGGATTATGATGGATGCCGCCAAGGGCTTGGCTTTCTTGCATACCAAATGCGAGCCTGCAATAATTCATGGCGACATTAAGCCTAGCAATATTCTACTGGATGGCGGGTTCTCTGCTAGAATTGCCGATTTTGGCCTCGCCAGGCTGAAGGTAGAGAATCTGGAACAGCAGAAAGAGGATCTCGAGGGGCAGAAAGCCGAAGGAAAGAGGGATGAAGCGGCGCCGGTCGATGTGATCGCCGAAGATGATAAGTCGGTGAGGGAAGAAACGGAGAGCGTGATGACTGCGGAATTGGGATTCTCTGCTGTTGATGGAGATCCGGGGTGTCTGGGGAATATGCAGTCGCCGGAAACTTATGGTAGCAGTTCGGTATCGCCGGAGCAGAATCCGGGCTTTCTTTCGAGCAGTGCTTCTCCCGAGGGTTTGAATGATGAAACAGAAACGGTGGTGACCGAGACTCATGACGAAAGAACCCCCTCCGAGATTGTCGATTTGGAGAAAAACATGGGAATGTCGAGCAATGGGATCGTAGCCAAGACTGGATCTGTGGACTGCAGGAGCACCGATTTTTCAAGGGATGATGATGATAAAATGAGCATCGATAGTGGGAGAAAAAAGACTCCAACAAAGGATTGGTGGTGGAGGCAGCAGGACAGCAGTGGGGAATTCAGCGTTAAGGACTATGTTATGGAGTGGATTGGTACTGAAATTAAAAAGGAGAGGCCCAGCGGCAGCGAACGGGATTTGAACCCGGTTGGGAGGAGGAAGAAGCCAGAGAAGAGGCCGAGGAGGGAAAAAAGCTTCGAATGGTGGGTGACTCTTGCAGAGGAGGACGAGAGTGAAGAGCCCAAGAAGAAGGAGAAATCGAAGAACAGAGAGCGCAGGGAATGGTGGAGGGAAGAATTTTGCGAAGAATTGAGCCAGAAGAGCAACCGTAGCAGTAGACGAGTTAATAGCCGAAGCAGAAGCAGAGACTGGTTTCGCGATGAACCTCTTCCCCTCCACCACCATAGTAGGGATTGGGGTAGCGGAGATGTGATGAGAAGCGGAGTGAGCAGCACACCGAGCATGCGAGGCACCGTTTGCTACGTTGCTCCCGAGTATGGCGGTGGCGGTGCGCTCTCAGAGAGGGGCGATGTTTACAGTTTTGGGGTTCTTCTGTTGGTAATTATCTCCGGCCGGAGGCCTCTGCAGGTTATGGCGTCTCCGATGACACATTTCGAGAGAGCGAATCTCATATCGTGGGCCAGACACTTGGCTCGTTCGGGCAACGTCTTGGACCTCGTGGACGCCACGCTTGGTGAGGACTACGATAAAAGCCAGGCTCTGCTTTGCATCACCGTTGCTCTTCTCTGCCTGCAGAGATCGCCAGCAGCGAGACCCGCCATGACTGAGGTGGTCAAGATACTGTCAGGGGAAGTGGAGGCCCCGTCGCTTCCTTTCGAATTTTCTCCTTCGCCACCATATGGGTTTCCCTTTAGGTCGCGCAGGAAGGCCTCTTGCAGGGCTTCCCCTGCAATTCATGCATAAATGAGGCCTTCCCCTGCAATTCATGCATAAATTTTGTAGTGCCTCTTGCAGGGCTTCCCCTGCAATTCATGCATAAATTTTGTAGTGCTTATGTTTTTTTGGTGACTGCATCCATAAATTATTCCCATTCCCATTCCCATTCCCATTGTAAATTTTTTTTGCTCTACAGGGCATGTACAATACATCTATTGGCAATACCCTCAGTCCGACTCCGAGCTGACTTTGTTCGAATGCCCAGATGGATTTTCAAAACTTTCATAGGAGTTACTGTAGAGACCGTGGGGTCTGGACTGCAAGCTTAGCTTTCATATTAATTTCACTTACAGATCTAATGTCCTTGAGCCGTAATAATGAATATATTCGTCCTTCTCATCGAAGCAATGTATATATATTTATTTTTAGCAGTATTGTCATAAAGGCATCGTACA

Ace file of the UniGene sp_v3.0_unigene8759

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase-like protein [Arabidopsis thaliana] sp\|O64639.1\|Y2559_ARATH RecName: Full=Receptor-like serine/threonine-protein kinase At2g45590 gb\|AAC06160.1\| putative protein kinase [Arabidopsis thaliana] gb\|AAO22616.1\| putative protein kinase [Arabidop	-	-	0.0	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	S-receptor kinase, putative	-	-	3.021e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	1.404e-09	-
Sma3	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	1.238e-19	-

Source	Gene names
Sma3	AT3G24550; AT4g25390; AT4g32710; At1g49270; At1g61380; At1g61490; At1g61550; At2g18470; At2g45590; At4g11470; At4g11480; At4g11490; At4g23130; At4g23140; At4g23160; At4g23180; At4g23190; At4g23200; At4g23230; At4g23290; At4g25390; At4g32300; At4g34440; At

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to plasma membrane	GO:0005887	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	defense response to bacterium, incompatible interaction	GO:0009816	Biological Process	-
Sma3	recognition of pollen	GO:0048544	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F0 complex, subunit C	IPR000454	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002301309.1	predicted protein [Populus trichocarpa]	0.0	46%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 629 - 656

Fln protein: G*NLQRYSYRVLKAATGSFAEGQKLGQGGFGAVYKGKLRNGTEIAVKVLDTNSVQGEREFQNEVSVIGKVSSPHIVGLLGFCADRKRKLLVYEFMRNRSLQDALFGDKYSVQLDWKKRFGIMMDAAKGLAFLHTKCEPAIIHGDIKPSNILLDGGFSARIADFGLARLKVENLEQQKEDLEGQKAEGKRDEAAPVDVIAEDDKSVREETESVMTAELGFSAVDGDPGCLGNMQSPETYGSSSVSPEQNPGFLSSSASPEGLNDETETVVTETHDERTPSEIVDLEKNMGMSSNGIVAKTGSVDCRSTDFSRDDDDKMSIDSGRKKTPTKDWWWRQQDSSGEFSVKDYVMEWIGTEIKKERPSGSERDLNPVGRRKKPEKRPRREKSFEWWVTLAEEDESEEPKKKEKSKNRERREWWREEFCEELSQKSNRSSRRVNSRSRSRDWFRDEPLPLHHHSRDWGSGDVMRSGVSSTPSMRGTVCYVAPEYGGGGALSERGDVYSFGVLLLVIISGRRPLQVMASPMTHFERANLISWARHLARSGNVLDLVDATLGEDYDKSQALLCITVALLCLQRSPAARPAMTEVVKILSGEVEAPSLPFEFSPSPPYGFPFRSRRKASCRASPAIHA*

Protein Length: 630

Fln nts: CGGGTAAAATTTGCAGAGATACTCCTATCGAGTGCTTAAAGCCGCGACCGGGTCGTTCGCCGAGGGGCAAAAGCTGGGCCAGGGCGGGTTTGGGGCGGTTTACAAGGGGAAATTGCGTAACGGAACGGAAATTGCCGTCAAGGTGCTGGATACCAATTCCGTGCAGGGCGAGCGCGAGTTTCAGAATGAGGTTTCCGTTATAGGAAAGGTCAGCTCGCCGCACATAGTGGGCCTCCTGGGTTTCTGCGCGGATCGGAAAAGAAAGCTTCTGGTTTATGAATTTATGCGGAATCGGAGCCTTCAAGATGCTCTGTTTGGTGATAAATATTCTGTGCAGCTCGACTGGAAGAAAAGATTCGGGATTATGATGGATGCCGCCAAGGGCTTGGCTTTCTTGCATACCAAATGCGAGCCTGCAATAATTCATGGCGACATTAAGCCTAGCAATATTCTACTGGATGGCGGGTTCTCTGCTAGAATTGCCGATTTTGGCCTCGCCAGGCTGAAGGTAGAGAATCTGGAACAGCAGAAAGAGGATCTCGAGGGGCAGAAAGCCGAAGGAAAGAGGGATGAAGCGGCGCCGGTCGATGTGATCGCCGAAGATGATAAGTCGGTGAGGGAAGAAACGGAGAGCGTGATGACTGCGGAATTGGGATTCTCTGCTGTTGATGGAGATCCGGGGTGTCTGGGGAATATGCAGTCGCCGGAAACTTATGGTAGCAGTTCGGTATCGCCGGAGCAGAATCCGGGCTTTCTTTCGAGCAGTGCTTCTCCCGAGGGTTTGAATGATGAAACAGAAACGGTGGTGACCGAGACTCATGACGAAAGAACCCCCTCCGAGATTGTCGATTTGGAGAAAAACATGGGAATGTCGAGCAATGGGATCGTAGCCAAGACTGGATCTGTGGACTGCAGGAGCACCGATTTTTCAAGGGATGATGATGATAAAATGAGCATCGATAGTGGGAGAAAAAAGACTCCAACAAAGGATTGGTGGTGGAGGCAGCAGGACAGCAGTGGGGAATTCAGCGTTAAGGACTATGTTATGGAGTGGATTGGTACTGAAATTAAAAAGGAGAGGCCCAGCGGCAGCGAACGGGATTTGAACCCGGTTGGGAGGAGGAAGAAGCCAGAGAAGAGGCCGAGGAGGGAAAAAAGCTTCGAATGGTGGGTGACTCTTGCAGAGGAGGACGAGAGTGAAGAGCCCAAGAAGAAGGAGAAATCGAAGAACAGAGAGCGCAGGGAATGGTGGAGGGAAGAATTTTGCGAAGAATTGAGCCAGAAGAGCAACCGTAGCAGTAGACGAGTTAATAGCCGAAGCAGAAGCAGAGACTGGTTTCGCGATGAACCTCTTCCCCTCCACCACCATAGTAGGGATTGGGGTAGCGGAGATGTGATGAGAAGCGGAGTGAGCAGCACACCGAGCATGCGAGGCACCGTTTGCTACGTTGCTCCCGAGTATGGCGGTGGCGGTGCGCTCTCAGAGAGGGGCGATGTTTACAGTTTTGGGGTTCTTCTGTTGGTAATTATCTCCGGCCGGAGGCCTCTGCAGGTTATGGCGTCTCCGATGACACATTTCGAGAGAGCGAATCTCATATCGTGGGCCAGACACTTGGCTCGTTCGGGCAACGTCTTGGACCTCGTGGACGCCACGCTTGGTGAGGACTACGATAAAAGCCAGGCTCTGCTTTGCATCACCGTTGCTCTTCTCTGCCTGCAGAGATCGCCAGCAGCGAGACCCGCCATGACTGAGGTGGTCAAGATACTGTCAGGGGAAGTGGAGGCCCCGTCGCTTCCTTTCGAATTTTCTCCTTCGCCACCATATGGGTTTCCCTTTAGGTCGCGCAGGAAGGCCTCTTGCAGGGCTTCCCCTGCAATTCATGCATAA___ATGAGGCCTTCCCCTGCAATTCATGCATAAATTTTGTAGTGCCTCTTGCAGGGCTTCCCCTGCAATTCATGCATAAATTTTGTAGTGCTTATGTTTTTTTGGTGACTGCATCCATAAATTATTCCCATTCCCATTCCCATTCCCATTGTAAATTTTTTTTGCTCTACAGGGCATGTACAATACATCTATTGGCAATACCCTCAGTCCGACTCCGAGCTGACTTTGTTCGAATGCCCAGATGGATTTTCAAAACTTTCATAGGAGTTACTGTAGAGACCGTGGGGTCTGGACTGCAAGCTTAGCTTTCATATTAATTTCACTTACAGATCTAATGTCCTTGAGCCGTAATAATGAATATATTCGTCCTTCTCATCGAAGCAATGTATATATATTTATTTTTAGCAGTATTGTCATAAAGGCATCGTACA

Fln Alignment:

Contig8759___YSYRVLKAATGSFAEGQKLGQGGFGAVYKGKLRNGTEIAVKVLDTNSVQGEREFQNEVSVIGKVSSPHIVGLLGFCADRKRKLLVYEFMRNRSLQDALFGDKYSVQLDWKKRFGIMMDAAKGLAFLHTKCEPAIIHGDIKPSNILLDGGFSARIADFGLARLKVEN
C0PRI9______________FTYEDLEAATNGFSRTNLLGQGGFGYVYKGILPGSKTIAVKQLKVGGSQGEREFQAEVEIISRVHHRHLVSLVGYCIAGSQRLLVYEFVPNDTLEHHLHG-KGQPNMEWPTRLKIAIGAARGLAYLHEDCYPKIIHRDIKASNILLDSNFEAKVADFGLAKLASED

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1230	83		16		0.994512
1231	83		16		0.994512
1234	83		16		0.994512
1375	12		87		0.992554
1377	87		12		0.992554
1534	87		12		0.992554
1704	21	78			1.0
1782	88	11			0.999952
1788			87	12	0.999964
1793		86		13	0.999973
1833		11	88		0.923564
1835			11	88	0.923564
1906		88		11	0.923564
2095		20	80		0.995493
2176	20		80		0.995493

SSRs (tot: 2)

Start position	End position	Sequence	Length
935	946	GAT GAT GAT GAT	12
2009	2035	ATTCCC ATTCCC ATTCCC ATTCCC ATT	27

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain