SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8723

Length: 2080 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene8723
TGGTTCCTTCTGAATTACCATTACTATATATATTACAGCCTGATCCAGTTTCATTGGATATATTGAGGACTTCGAGCTTCTGCTTTATTTGTGGTGGTTCGTTCTGCCTTACCTTTCCTATCTATTTTATAGCCTTATCCATTTTCTTTTGTATTTGGGCTTCCCGCTGAATTTGCGTTTTCTGTGGCATTTAGGCTATTCGAGATGGTTAGAAGAGGCACTGCAAATACGGCATCTATAAATGCTTCTCTGGCATTTTGGCTATTCGAGATGGTTAGAAGAGGCACTGCAAATACGGCATCTATAAACAATGCATTTATTGGAGTACTAATTTTCATTACAATGGTATCGAGACCAATAGATGCCCACACACAGTTCCAATATCACAGGGCATCCGTGGCAACAAAGGAATTGTCAGATGTTAATTCCACCAAAGTAGTGCTTCAAGTAAACATCACTCTGCTGAACAATGCAGTGTCCAAAGGAGCCGTTTGTTTAGATGGAAGCCCTCCAGCTTACCATTTACACAGGGGATTTGGACCAGGTGCAAATAACTGGCTTGTTCACATGGAGGGTGGAGGATGGTGTTACGATACGCTGTCTTGTTCCCAACGCGCAAATTCTCCATTGGGTTCTTCTCTGTTCATGGCAGAAACAATAGAATTTCCAGGCATTTTAAGTGATGTTCCATCACAAAATCCAGATTTCTACAGTTGGAACCGCGTTATGGTTAGATACTGTGACGGGTCGTCATTCACTGGAGATGTGGAGGAGGTAGATCCGGCCAGCAACCTCTATTTCAGAGGGCAAAGGATTTGGCAAGCTGTAATGGAAGATCTTTTGGCACAGGGGATGGATAAAGCTCAACAGGCTCTGCTTACTGGATGCTCAGCCGGTGGTGTAACCACATTTATTCACTGTGATAGATTTAGTGATCTTCTGCCACGCAGGGCTAAAGTCAAGTGCATGCCAGATGCTGGATTTTTTATTGATTCGAATGACATATCAGGAGCAAACCAGCAGAGGTTTCTTGTAAATCAAATGATCACGCTTCATGGATCTTCAAAACACTTGCCTAAAGCTTGCACATCTCGAATCAGTCATGCAAGCCTGTGCTTTTTTCCACAATATCTCTTACATTGGATCAGAACGCCACTTCTTGTTGTAAATTCAGCATATGACCCACTGCAGATTAGATTCATTCTCGTACCTAGTGCAGCAGATCCCAATAATTATTGGCAAAATTGCAAGATGAATATCACAAAGTGTGCTCCATGGCAATTAAAAATAATGGAAGTATTCACAGATTATTTGATCAATGCATTAGCACCAGTGTACTACTCAAGAACTGGAGGGTTGTTTATCAATTCATGCTTCGCACACTGCCAGACAAATATACAAGCCCTGTGGCACTCACCTAATTCTCCCAGATTAAGTTCAAAGACCATTGCAGAAGCAGCAGGAGACTGGTTTTTTCATCGAGGTGTTGTCAAGTACATTGATTGTCCATATCCTTGTGATTCTACTTGTAATAACAATTTTGCCTGAAATCACACTTCCATAAGCCACTAAGAAATCTTAACAATGCAGAAGATTATCTTTCTCATTTCTTATTGTCAATACCAAATTGCTGTAATAGTTGATGCCCTATGCTTTTGTTATTCTACTTGTCATAGCAACTTTGTCTTCAGCTTTAAAATAAAAGCCTCCGAATCTACATCACCATCTATCCAAAATTTAGCCACATTCACATCTGAGCAACAATGGAAAATCATTCCATTTCTTTGTAAATTCTCTCCTTTCTTTTAATGCGTATTGGGGTTTTTAGCGGAATTTTGTGAAAGGTTGTCATTGTGAGTCTCAAGGTGTCAATTTGGAAGTTGTTGTTCCCTATATCTGAGTTGTAATTGTGTCATTTCCGGGTCATGGATCCACTTTCTTAGGACCTAGATTTGTCGAAGTCTGTATAGCCTATATATATAACTACTGTGATCAATAAAGTATTGAAGTGTGATTTGTGTGTGACATTGCTCCCTATCTCAATTTCTGACATTGTATCAGAACATGTTATGGCTTGATT

Ace file of the UniGene sp_v3.0_unigene8723 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative Pectinacetylesterase [Arabidopsis thaliana] gb\|AAT70429.1\| At4g19420 [Arabidopsis thaliana] gb\|AAU45212.1\| At4g19420 [Arabidopsis thaliana] gb\|AEE84180.1\| putative Pectinacetylesterase [Arabidopsis thaliana]	-	-	0.0	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Putative pectinacetylesterase	-	-	1.603e-40	-

Source	Gene names
Sma3	AP8_E07.1; AT4G19420; AT4g19410; AT4g19420; AT5G23870; AT5G26670; At2g46930; At3g05910; At3g09410; At3g09420; At3g62060; At4g19410; At4g19410/T5K18.190; At4g19420; At5g23870; At5g23870/MRO11.9; At5g26670; At5g45280; B0403H10-OSIGBa0105A11.19; B1078G07.20;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Pectinacetylesterase	IPR004963	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G19420.1	Pectinacetylesterase family protein chr4:10587504-10589807 REVERSE LENGTH=397	53%
RefSeq	Arabidopsis thaliana	NP_193677.2	putative Pectinacetylesterase [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002328835.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACV4

Fln msg: your sequence is longer than subject: 448 - 411

Fln protein: MVRRGTANTASINASLAFWLFEMVRRGTANTASINNAFIGVLIFITMVSRPIDAHTQFQYHRASVATKELSDVNSTKVVLQVNITLLNNAVSKGAVCLDGSPPAYHLHRGFGPGANNWLVHMEGGGWCYDTLSCSQRANSPLGSSLFMAETIEFPGILSDVPSQNPDFYSWNRVMVRYCDGSSFTGDVEEVDPASNLYFRGQRIWQAVMEDLLAQGMDKAQQALLTGCSAGGVTTFIHCDRFSDLLPRRAKVKCMPDAGFFIDSNDISGANQQRFLVNQMITLHGSSKHLPKACTSRISHASLCFFPQYLLHWIRTPLLVVNSAYDPLQIRFILVPSAADPNNYWQNCKMNITKCAPWQLKIMEVFTDYLINALAPVYYSRTGGLFINSCFAHCQTNIQALWHSPNSPRLSSKTIAEAAGDWFFHRGVVKYIDCPYPCDSTCNNNFA*

Protein Length: 449

Fln nts: TGGTTCCTTCTGAATTACCATTACTATATATATTACAGCCTGATCCAGTTTCATTGGATATATTGAGGACTTCGAGCTTCTGCTTTATTTGTGGTGGTTCGTTCTGCCTTACCTTTCCTATCTATTTTATAGCCTTATCCATTTTCTTTTGTATTTGGGCTTCCCGCTGAATTTGCGTTTTCTGTGGCATTTAGGCTATTCGAG_-_ATGGTTAGAAGAGGCACTGCAAATACGGCATCTATAAATGCTTCTCTGGCATTTTGGCTATTCGAGATGGTTAGAAGAGGCACTGCAAATACGGCATCTATAAACAATGCATTTATTGGAGTACTAATTTTCATTACAATGGTATCGAGACCAATAGATGCCCACACACAGTTCCAATATCACAGGGCATCCGTGGCAACAAAGGAATTGTCAGATGTTAATTCCACCAAAGTAGTGCTTCAAGTAAACATCACTCTGCTGAACAATGCAGTGTCCAAAGGAGCCGTTTGTTTAGATGGAAGCCCTCCAGCTTACCATTTACACAGGGGATTTGGACCAGGTGCAAATAACTGGCTTGTTCACATGGAGGGTGGAGGATGGTGTTACGATACGCTGTCTTGTTCCCAACGCGCAAATTCTCCATTGGGTTCTTCTCTGTTCATGGCAGAAACAATAGAATTTCCAGGCATTTTAAGTGATGTTCCATCACAAAATCCAGATTTCTACAGTTGGAACCGCGTTATGGTTAGATACTGTGACGGGTCGTCATTCACTGGAGATGTGGAGGAGGTAGATCCGGCCAGCAACCTCTATTTCAGAGGGCAAAGGATTTGGCAAGCTGTAATGGAAGATCTTTTGGCACAGGGGATGGATAAAGCTCAACAGGCTCTGCTTACTGGATGCTCAGCCGGTGGTGTAACCACATTTATTCACTGTGATAGATTTAGTGATCTTCTGCCACGCAGGGCTAAAGTCAAGTGCATGCCAGATGCTGGATTTTTTATTGATTCGAATGACATATCAGGAGCAAACCAGCAGAGGTTTCTTGTAAATCAAATGATCACGCTTCATGGATCTTCAAAACACTTGCCTAAAGCTTGCACATCTCGAATCAGTCATGCAAGCCTGTGCTTTTTTCCACAATATCTCTTACATTGGATCAGAACGCCACTTCTTGTTGTAAATTCAGCATATGACCCACTGCAGATTAGATTCATTCTCGTACCTAGTGCAGCAGATCCCAATAATTATTGGCAAAATTGCAAGATGAATATCACAAAGTGTGCTCCATGGCAATTAAAAATAATGGAAGTATTCACAGATTATTTGATCAATGCATTAGCACCAGTGTACTACTCAAGAACTGGAGGGTTGTTTATCAATTCATGCTTCGCACACTGCCAGACAAATATACAAGCCCTGTGGCACTCACCTAATTCTCCCAGATTAAGTTCAAAGACCATTGCAGAAGCAGCAGGAGACTGGTTTTTTCATCGAGGTGTTGTCAAGTACATTGATTGTCCATATCCTTGTGATTCTACTTGTAATAACAATTTTGCCTGA___AATCACACTTCCATAAGCCACTAAGAAATCTTAACAATGCAGAAGATTATCTTTCTCATTTCTTATTGTCAATACCAAATTGCTGTAATAGTTGATGCCCTATGCTTTTGTTATTCTACTTGTCATAGCAACTTTGTCTTCAGCTTTAAAATAAAAGCCTCCGAATCTACATCACCATCTATCCAAAATTTAGCCACATTCACATCTGAGCAACAATGGAAAATCATTCCATTTCTTTGTAAATTCTCTCCTTTCTTTTAATGCGTATTGGGGTTTTTAGCGGAATTTTGTGAAAGGTTGTCATTGTGAGTCTCAAGGTGTCAATTTGGAAGTTGTTGTTCCCTATATCTGAGTTGTAATTGTGTCATTTCCGGGTCATGGATCCACTTTCTTAGGACCTAGATTTGTCGAAGTCTGTATAGCCTATATATATAACTACTGTGATCAATAAAGTATTGAAGTGTGATTTGTGTGTGACATTGCTCCCTATCTCAATTTCTGACATTGTATCAGAACATGTTATGGCTTGATT

Fln Alignment:

Contig8723___AFIGVLIFITMVSRPIDAHTQFQYHRASVATKELSDVNSTKVVLQVNITLLNNAVSKGAVCLDGSPPAYHLHRGFGPGANNWLVHMEGGGWCYDTLSCSQRANSPLGSSLFMAETIEFPGILSDVPSQNPDFYSWNRVMVRYCDGSSFTGDVEEVDPASNLYFRGQRIWQAVMEDLLAQGMDKAQQALLTGCSAGGVTTFIHCDRFSDLLPRRAKVKCMPDAGFFIDSNDISGANQQRFLVNQMITLHGSSKHLPKACTSRISHASLCFFPQYLLHWIRTPLLVVNSAYDPLQIRFILVPSAADPNNYWQNCKMNITKCAPWQLKIMEVFTDYLINALAPVYYSRTGGLFINSCFAHCQTNIQALWHSPNSPRLSSKTIAEAAGDWFFHRGVVKYIDCPYPCDSTCNNNF
D5ACV4______________AFILILIFITVAPRTIYANTQFQYHGGSVAKKVLPDVNSTNAMLLVNITVLNNAVFKGAVCLDGSPPAYHLHRGFGSGANRWLVHMEGGGWCYDMLSCSGRAASPLGSSLYMGDTIAFTGILSDVRSQNPDFYSWNRVMVRYCDGSSFTGDVEEVDPITKVHFRGQRIWQAVMEDLLAKGMYKARQALLTGCSAGGVTTFIHCDRFNDLLPGSAKVKCMPDAGFFIDSNDISGGNQQRFLVDQMVTLHGSSKHLPVACTSEMIPSSLCFFPQYLLQWIRTPLLVVNSAYDPLQIRFILVPAAADPNNYWRNCKMNITRCAPWQLRVMEEFTDYMISALTPVSNSRTGGLFINSCYAHCQTNVQALWHSPSSPRLYSKTIAEAAGDWYFGRSVVKYIDCPYPCDSTCNNSF

SNPs (tot: 66)

Position	A %	C %	G %	T %	Probability
747		85	14		0.993533
749		85	14		0.993533
752		14	85		0.993533
753	14			85	0.993533
1095	71		14		0.984337
1150		88		11	0.923564
1158	88		11		0.923564
1888		25		75	0.996473
1898		75	25		0.996473
1902	25			75	0.996473
1905		75		25	0.996473
1907		75		25	0.996473
1908	75			25	0.996473
1909	25		75		0.996473
1916		75		25	0.996473
1917			25	75	0.996473
1918			75	25	0.996473
1920	75			25	0.996473
1923		25		75	0.996473
1925		25		75	0.996473
1926	25	75			0.996473
1930	75		25		0.996473
1932		25		75	0.996473
1933	50	25	25		0.995533
1935	50		50		1.0
1936	25			75	0.996473
1942	75	25			0.996473
1943	25	75			0.996473
1944	25			75	0.996473
1945	25		75		0.996473
1946			75	25	0.996473
1947	50		25		0.995533
1949	25	75			0.996473
1951		25	50	25	0.995533
1952			75	25	0.996473
1953	25	75			0.996473
1954		25		75	0.996473
1955	25		75		0.996473
1957	66		33		0.997452
1959	33			66	0.997452
1960	66		33		0.997452
1963			33	66	0.997452
1964	66			33	0.997452
1966	66		33		0.997452
1968			33	66	0.997452
1971	33			66	0.997452
1976	66			33	0.997452
1977			33	66	0.997452
1978			33	66	0.997452
1980	66	33			0.997452
1984		33	66		0.997452
1986	66			33	0.997452
1989		66		33	0.997452
1990	66			33	0.997452
1994		33		66	0.997452
1996	66		33		0.997452
1999	33		66		0.997452
2001	66	33			0.997452
2003		33		66	0.997452
2006	33	66			0.997452
2011		66	33		0.997452
2012			33	66	0.997452
2013	33			66	0.997452
2022	33	66			0.997452
2024	33		66		0.997452
2026	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain