SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8677

Length: 1873 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8677

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GDP-Mannose transporter [Arabidopsis thaliana]	-	-	0.0	64%
FL-Next	sp=GDP-mannose transporter GONST1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	68%
Sma3	GDP-mannose transporter, putative	-	-	1.141e-08	-

Source	Gene names
Sma3	At1g07290; At2g13650; CHLREDRAFT_195551; CHLREDRAFT_97318; GMT1a\|GMT1b; GONST1; GSVIVT00024140001; GSVIVT00034804001; LOC_Os03g61100; OJ1111_B11.11; Os08g0107400; OsI_14146; OsI_27528; OsJ_13195; OsJ_25762; P0450B04.20-1; PHYPADRAFT_15539; POPTRDRAFT_2171

Source	GOs	Term	Type	Identity
Sma3	Golgi membrane	GO:0000139	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	-
Sma3	GDP-mannose transmembrane transporter activity	GO:0005458	Molecular Function	-
Sma3	carbohydrate transport	GO:0008643	Biological Process	-
Sma3	GDP-mannose transport	GO:0015784	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit	IPR019379	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G13650.1	GONST1 golgi nucleotide sugar transporter 1 chr2:5687584-5690303 REVERSE LENGTH=333	68%
RefSeq	Arabidopsis thaliana	NP_001189524.1	GDP-mannose transporter [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002306245.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q941R4

Fln msg:

Fln protein: MASKSRTSAGSRPISDDFDVEDGKVEKDVERTVREHGFIKVRNQALISGLAYCLSSCSMILLNKVVLSGYNLDAGISLMFYQSLVSVAVVYALTLFGIITTEPFTWNLVRVWIPVNIIFVGMLVTSNFSLKYINIAMLTILKNVTNIITALGEMYLFKKHQNNKVWAALIFMVISAISGGITDLSFHVVGYAWQIVNCFLTAAYSLTLRRVMDVAKQQTKSGNLNEFSMVLLNNLLSLPLGLSLIIVSNEWEYLYSSPVLRIPVFWVVATSSGLLGLAISFTSMWFLHQTGPTTYSLVGSLNKIPISLAGILLFKVPINVPNLFSILFGLFAGVFFAKAKNDEVN*

Protein Length: 347

Fln nts: CATTTCATATGTTAAATACCCATTTCAGTTTCAATAACAATGGGGAATCCTTGCCGTTTCACTGCAACATTACGGGCAGCCTGCTGCAGGAATTCGGCCTTTGTGCTGGTTTCAGGCATGGCAGTGAGGTCTTGGACAGCACATCTGAATTAAAGCTCAGAGACGGTC_-_ATGGCCTCAAAATCAAGAACATCCGCAGGATCACGACCAATATCTGATGATTTTGATGTAGAGGATGGTAAAGTGGAGAAAGACGTTGAAAGGACTGTCCGGGAACATGGGTTCATAAAAGTGCGGAACCAGGCCCTTATTTCTGGATTGGCATATTGTCTTTCTTCATGCAGCATGATCCTGCTTAATAAAGTTGTTCTCTCAGGTTATAATTTAGATGCAGGGATATCTCTAATGTTTTACCAGAGCCTTGTGTCTGTGGCAGTTGTGTATGCCCTCACCTTGTTTGGAATAATTACAACAGAACCATTCACTTGGAACCTTGTACGAGTATGGATTCCTGTGAATATCATCTTTGTTGGAATGCTTGTTACGAGTAATTTCAGTTTGAAATATATAAATATTGCAATGTTGACAATTTTGAAGAATGTTACAAATATCATAACAGCTCTAGGAGAGATGTATCTTTTCAAGAAGCATCAGAACAACAAAGTTTGGGCTGCTCTCATTTTCATGGTGATATCTGCTATTAGTGGAGGAATTACAGATCTCTCTTTTCATGTGGTGGGTTATGCTTGGCAAATTGTGAATTGTTTCCTGACAGCAGCATATTCGCTAACACTGCGCAGAGTTATGGATGTGGCAAAGCAACAAACAAAATCAGGAAATTTGAATGAATTCTCAATGGTGTTGCTGAACAATTTACTTTCACTACCTTTGGGACTTTCACTAATTATAGTTTCCAATGAATGGGAATACTTATATTCTTCGCCCGTACTTAGGATTCCAGTGTTTTGGGTTGTGGCAACTTCCAGTGGATTGCTGGGCCTTGCTATTAGTTTCACATCAATGTGGTTTTTGCATCAGACTGGACCTACAACATATAGTTTGGTGGGATCATTGAATAAGATTCCTATCTCACTCGCTGGGATATTGCTCTTTAAAGTTCCAATAAATGTTCCAAATTTATTCAGCATACTTTTCGGACTTTTCGCAGGAGTATTCTTTGCCAAGGCCAAAAATGACGAAGTAAATTGA___AGTGGCAGACAATATACTAAACTTAGAGTGTTGCATGTTGAAAAGGGCGGGGAATTTTAGAAATCCCATTCCCTGGTGCAGATCCTTTTTGTAGGATCTCTGATCTCTCAAATCGTCTTAATTATTGAATCACAGAAAGGTTTTCGGGCCTGTGAAAATTTCATTCATTGAATTGTTCACTTTGTGTGTGACTATTATCAATTAATCATGTGTCTTGAATGGGCTTCTGTGATAGTGCAATGTACAACAACCATTGGAAGCTTATCTTATGCTCTAATTGTAACTGAGCAATAAAGCAAATCTCTTTTACATAAGAAGGCATATCTATAGACAAAATACGTCCCAAATATGGACAGCAGAGAAATAGTATTGTCCTCCAGTGAAATTTTTATAATGAATCTCCCACTTAAATATGTCAAGCAGTCCTTGACTCTACTGCTGGAGATTAAAAAGATGTGGGAAGCAAAATAAATGGGCGTGGCATCTTTAACAGGTTGACAATTTTTTCGAGATGTCTCTACTTCCGAACTGGTGCAAGCCAGTTCTACTTTAATTATTTAATATTCATTTTCAATGCTAAATTTCGCATCTAGTGTCCTTATGGACAGACTCTTTGGATGCAACACACAAATCAAAGTCTTTTCAATGGCTCTGGTGTCGCAATCTC

Fln Alignment:

Contig8677___DDFDVEDGKV-----EKDVERTVREHGFIKVRNQALISGLAYCLSSCSMILLNKVVLSGYNLDAGISLMFYQSLVSVAVVYALTLFGIITTEPFTWNLVRVWIPVNIIFVGMLVTSNFSLKYINIAMLTILKNVTNIITALGEMYLFKKHQNNKVWAALIFMVISAISGGITDLSFHVVGYAWQIVNCFLTAAYSLTLRRVMDVAKQQTKSGNLNEFSMVXXXXXXXXXXXXXXIIVSNEWEYLYSSPVLRIPVFWVVATSSGLLGLAISFTSMWFLHQTGPTTYSLVGSLNKIPISLAGILLFKVPINVPNLFSILFGLFAGVFFAKAKNDE
Q941R4______________DGVDLEDGKTVKSGGDKPIPR--------KIHNRALLSGLAYCISSCSMILVNKFVLSSYNFNAGIFLMLYQNFVSVIIVVGLSLMGLITTEPLTLRLMKVWFPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNKQHDNRVWAALFLMIISAVSGGITDLSFNAVGYAWQIANCFLTASYSLTLRKTMDTAKQVTQSGNLNEFSMVLLNNTLSLPLGLLLSYFFNEMDYLYQTPLLRLPSFWMVMTLSGLLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSIAGIVLFNVPTSLQNSASILFGLVAGVVFARAKMRE

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
1034	75		25		0.996473
1037	75			25	0.996473
1042			75	25	0.996473
1045		75	25		0.996473
1048	75		25		0.996473
1049		75		25	0.996473
1050	75	25			0.996473
1056		25		75	0.996473
1256	12		87		0.992554
1257			87	12	0.992554
1258		75	12	12	0.975346
1540			90	10	0.90298
1552	11	88			0.923564
1557	88			11	0.923564
1566	12		87		0.992554
1569			87	12	0.992554
1570	87			12	0.992554
1602		33		66	0.997452
1604	66			33	0.997452
1694	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain