SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8639

Length: 1253 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene8639 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative ubiquitin-conjugating enzyme E2 23 [Arabidopsis thaliana] sp\|Q9ZVX1.1\|UBC23_ARATH RecName: Full=Probable ubiquitin-conjugating enzyme E2 23; AltName: Full=Ubiquitin carrier protein 23 gb\|AAC64223.1\| putative ubiquitin-conjugating enzyme [Arabidop	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Sma3	Ubiquitin-conjugating enzyme-like	-	-	2.01e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ubiquitin--protein ligase.	EC:6.3.2.19	-	7.628e-17	-

Source	Gene names
Sma3	AT2G33770; At1g53020; At2g16920; At2g33770; At3g15355; F12A24.10; F14G24.30; F14G24.31; F8L10.11; F8L10.22; GSVIVT00010190001; GSVIVT00018588001; GSVIVT00027675001; GSVIVT00033153001; GSVIVT00036139001; LOC_Os03g47580; MICPUCDRAFT_48363; MICPUCDRAFT_6556;

Source	GOs	Term	Type	Identity
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	small conjugating protein ligase activity	GO:0019787	Molecular Function	-
Sma3	phosphate ion transport	GO:0006817	Biological Process	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	cellular response to phosphate starvation	GO:0016036	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-
Sma3	post-translational protein modification	GO:0043687	Biological Process	-
Sma3	regulation of protein metabolic process	GO:0051246	Biological Process	-
Sma3	phosphate ion homeostasis	GO:0055062	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	-
Sma3	VHS	IPR002014	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G16920.1	UBC23, PFU2 ubiquitin-conjugating enzyme 23 chr2:7334559-7338827 REVERSE LENGTH=1102	58%
RefSeq	Arabidopsis thaliana	NP_179284.1	putative ubiquitin-conjugating enzyme E2 23 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002305526.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2M6

Fln msg: your sequence is longer than subject: 314 - 108

Fln protein: MEQANEENTALDIIDMEQTNEENTVHSLSSSSCHEPGQFKHFDSISDAMDHFYRNETIQPINKRKWMKKIQHEWNNLGKHLPDTIFVRIYEDRMDLLRAVIVGAAGTPYQDGLFFFDIHFPSEYPDIPPLAYYHSGGLRLNPNLYKNGKVCLSLLNTWTGKGNEVWNPLSSNVLQLLVSIQGLVLNDNPYFNEPGFEKQIGSAIGEKNSLAYKENSFLLSCKSMLYVLRKPPKHFEMFVKEHFQKRGHCILRACDAYIKGAPVGSLSEDCTIVGEESENPGATSAGFKLILLKIVPKLIAAFTEIGVDCQEFQ*

Protein Length: 315

Fln nts: CGCTACACATTGAT_-_ATGGAGCAGGCAAATGAGGAAAATACAGCGCTAGACATTATTGATATGGAGCAGACAAATGAGGAAAATACAGTGCATAGCTTGTCTAGCAGTAGTTGTCATGAGCCAGGTCAATTTAAACATTTTGATAGTATAAGTGACGCTATGGATCACTTTTATCGGAATGAAACAATACAGCCTATCAATAAGCGGAAATGGATGAAGAAAATTCAACATGAATGGAACAATCTTGGAAAACACTTACCAGATACAATTTTTGTTAGAATATACGAGGATAGGATGGATTTGCTGAGAGCTGTGATTGTTGGAGCAGCCGGGACTCCGTATCAAGATGGACTTTTCTTCTTTGACATTCATTTTCCATCGGAATATCCCGATATACCACCTTTAGCTTACTACCATTCTGGTGGGTTACGGTTGAATCCAAATCTATATAAGAATGGAAAAGTCTGTCTGAGTCTTTTAAACACATGGACAGGCAAAGGGAATGAAGTGTGGAACCCGTTGTCATCAAATGTTTTACAACTGCTTGTCTCTATTCAAGGATTGGTACTAAATGATAATCCTTATTTTAATGAACCTGGATTTGAGAAACAGATTGGTTCAGCGATAGGGGAGAAGAACTCGTTAGCCTACAAAGAAAACTCTTTTCTCCTATCGTGCAAGTCAATGTTGTACGTATTGCGAAAGCCTCCAAAGCATTTTGAGATGTTTGTTAAAGAGCATTTTCAAAAACGCGGTCACTGTATTCTTCGTGCGTGTGATGCTTATATCAAAGGGGCTCCAGTTGGATCACTATCAGAGGATTGTACAATTGTTGGAGAAGAGTCTGAAAATCCGGGTGCTACTTCTGCTGGCTTCAAGCTTATATTACTTAAAATTGTTCCTAAACTTATTGCAGCATTCACTGAAATTGGAGTAGATTGCCAAGAATTTCAGTAG___TCATAACGTATGCATTAAAGTCACAAATTCCATCAACGATTGGATTCTTACTTGGCAAATACAAGTGTGGTTATTTCTTTCAAAGGCTTGATGTGGAATTCAAGAGCTATGTACTGTAGCAGAAGTTGTGGTTGCCGCCGCCAACCTAGTGCAATGTTCTTAGATTATCTAATATATGTGATTGCATCCATCCAAATAGTGAGCCATGCTAATTTTTGTATTATTTTATAAATTCAATTTAATTTGTATTACGGAAAATTGTTTTAGATGTTGGTGATACTTATTCTTGTACTATTT

Fln Alignment:

Contig8639___PKHFEMFVKEHFQKRGHCILRACDAYIKGAPVGSLSEDCTI-VGEESENPGATSAGFXXXXXXXXXXXIAAFTEIGVDCQEF
A9P2M6______________PKHFESFVREHFHQRGHYILGACNAYMMGAQVGCLSGEAMMGVHGRADTQSTSSIGFKIMLAKLIPKLVLAFKEVGADCEEF

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
408		66	33		0.997452
420		75		25	0.996473
472	80		20		0.995493
510			83	16	0.994512
712		75		25	1.0
724	75		25		1.0
763	20			80	0.999996
804		25		75	1.0
1068	14			85	0.993533
1070			42	57	1.0
1093		57	42		1.0
1111	85		14		0.993533
1145		66	33		1.0
1206		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain