SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8545

Length: 1818 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8545

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF659 multi-domain protein	-	-	0.0	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%

Source	Gene names
Sma3	GSVIVT00000858001; GSVIVT00001531001; GSVIVT00002235001; GSVIVT00002367001; GSVIVT00004224001; GSVIVT00005726001; GSVIVT00006112001; GSVIVT00010563001; GSVIVT00013610001; GSVIVT00014165001; GSVIVT00019208001; GSVIVT00019252001; GSVIVT00019718001; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pumilio RNA-binding repeat	IPR001313	-	-
Sma3	Glycoside hydrolase, family 1	IPR001360	-	-
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Polymorphic outer membrane protein repeat	IPR003368	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Histidine triad motif	IPR011151	-	-
Sma3		IPR011523	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3		IPR015706	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB70

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is longer than subject: 206 - 93

Fln protein: VASIDLINIVPLGQLTKKFIRVLPFWSVQPSDITVHPVCAHDALKSSNLWVQSRFSS*RIRPLKS**EGILYPGPTLATASIAGWKKGLFLAMLKGISLQRRNFAINLSACCFSVLFSIEPIVGCEPGVVRGTKNDDAAIGLTDAAVEPVPLGPLPSPDLLSCLLSSSLASLVFSNSSNAFMALWISSGVVFVQGPTSRPGICAR*

Protein Length: 207

Fln nts: TACCTGGCATTTTATCATCCTATCATTGACAGCCATCTCAAAGCCAAATGTGCCACCTGCCATCTTATATGTCTCAATTTGTTTAGAGATCTCTATACGTTGTTCTGGAGATCGCACCATCTTCTGGACACAGGATAAGAATCCATCCATGATCTCAGCATCAAAATCAAACCCACATGCATAAGAAAATGCAGGGTTCAGGAAAAGCCCAGCAGCATGAATGGGACGATGGAGTGTGTTGTTCCATCGCTCATCAATCACTCCCCATAGAAGGAGTTGTTTCTGAAACCCATCATCTCCCTTATCATCATAGTAGGCCCGAATGGCTTCTTTGGCCCTGTCCATGGCTTCATACAAATAGCCCATTGCGGGCTTCTCACCATCAACCAACCGAAGAACCTTTACCAAAGGTTCAGTAACGGCGCACACCTCCTGCACTCCCGCCCAGAAGTCTTCCTGGTATGAAACTAGTCTGCATACGGCCTCTCCTTCTGGTTTGCGGCTCATTGACGAAGCACGCCACTGCTCTGAAAGACATTCTCTTCAAATCCCACATAGAATTCAAAAGGGATTGAAGAGATATGAAACTCGTCGCAAACCGTGTAATGGCGGGGCGGACCAACTCTTTGTTGTTGGTGCATTTTCTCATCAAGCTAAGCACCGATGTATGATTGTATATAAATTTTGTGATGCTTTTTGAGGAGTCAACAATATCTTTGACAAAGTCAATTTTCCCTATGTCCTCTAACATCAAATCAATACAATGGGCAGCACAAGGTGTCCAAAATAAAGTAGGATGCCTGTCCATAAGCATTCTACCAGCAGCAACATAATTTGCAGCATTGTCCGTTATGACTTGGACAACATTTTCTGCACCCACCTCCAAAATAAACACATCCAGCAAATCACATAAAGTTCTTGCATCTTTGATTTG_-_ATGAGTTGCATCAATAGATTTGATAAACATAGTCCCCTTGGGACAACTAACCAAGAAGTTTATAAGGGTTCTGCCCTTTTGGTCAGTCCAACCATCTGACATAACAGTGCATCCTGTTTGTGCCCATGATGCCCTAAAATCCTCCAATCTTTGGGTGCAGTCACGCTTTTCCTCTTGAAGAATCCGGCCTCTGAAATCATGATAAGAAGGGATTTTGTACCCCGGGCCAACACTGGCAACAGCATCCATAGCAGGTTGGAAAAAAGGATTATTCCTTGCAATGCTGAAAGGAATATCACTCCAGAGGAGAAATTTTGCCATCAACCTATCAGCTTGTTGTTTTTCAGTTCTTTTTAGCATTGAACCGATAGTTGGTTGTGAACCAGGTGTGGTTCGAGGAACAAAAAATGATGATGCAGCTATCGGATTGACTGACGCTGCCGTAGAACCAGTGCCACTTGGCCCACTTCCTTCACCTGACCTTCTTAGTTGTCTTTTGAGTTCTTCTTTGGCCTCTCTAGTGTTCTCTAATTCTTCCAATGCTTTCATGGCCCTTTGGATAAGTTCAGGAGTTGTATTCGTACAGGGCCCCACATCACGTCCAGGGATCTGTGCAAGGTGATACTTCAACCTGTACACCCCCCCGGATATCTGCTTTCCACACAACTTGCAATGCAAGTTTTGTCTATCATTCGGAGAAAAAGGTTCACCATATTCCCAGAAAGGATCCAATTTCCTTGGCATTTTTGTTTCTGAATTTTGAATTTGCAAACCTATGGAAAAATAAGGATTAGGAAATAGGAATTTAGGATTACAAATTGAAATTACAATTTAGCATTTAGCCATTTACAAAATTACAAGTTACAAATTTCCAAAATCCCAAT

Fln Alignment:

Contig8545___VLASLI**VASIDLINIVPLGQLTKKFIRVLPFWSVQPSDITVHPVCAHDALKSSNLWVQSRFSS*RIRPLKS**EGILYPGPTLATASIAGW
D5AB70______________MFASLTLSDASTDLKNMVPCGQETRKFMIVRFFPSLHPSDMMVHPVLAHDTLKSIKYSSMDSTSFCKRDPLKSCILGPLKPLPQAIMESHIGW

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
253	33	66			0.997452
256		66		33	0.997452
264		33		66	0.997452
275			33	66	0.997452
319	75	25			0.996473
394	25		75		0.996473
426	12	87			0.992554
434		85		14	0.993533
443		85		14	0.993533
476	16		83		0.994512
483	16		83		0.994512
490		83		16	0.994512
495	16		83		0.994512
511	83		16		0.994512
513	16		83		0.994512
529		60		40	1.0
576	75			25	0.996473
578	25			75	0.996473
621	25		75		0.996473
827	16		83		0.994512
878			50	50	1.0
908	87		12		0.992554
927		87		12	0.992554
970	57		42		1.0
971	14		85		0.993533
983	16	83			0.994512
1012		14	85		0.993533
1046	10		90		0.90298
1070			77	22	0.999999
1091		12		87	0.992554
1123		90	10		0.90298
1124		90	10		0.90298
1185	20	80			0.995493
1189	80			20	0.995493
1224		25		75	0.996473
1350	90		10		0.90298
1351			10	90	0.90298
1364	20		80		0.999996
1369	10		90		0.90298
1448	11			88	0.923564
1501	88		11		0.923564
1502	77		22		0.999999
1561	87		12		0.992554
1727			85	14	0.993533
1730			14	85	0.993533
1731			14	85	0.993533
1743	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain