SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8515

Length: 1330 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8515

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Uncharacterized protein; Oryza glaberrima (African rice).	-	-	0.0	59%

Source	Gene names
Sma3	GSVIVT00000876001; OJ1212_A08.15; OJ1717_A09.2; Os02g0684600; OsI_08498; OsJ_07956; PHYPADRAFT_192867; POPTRDRAFT_580614; RCOM_1277060;

Source	InterPros	Term	Type	e value	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	0.0	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G53345.1	" unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D	55%
RefSeq	Arabidopsis thaliana	NP_564629.1	uncharacterized protein [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002329733.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: I1P366

Fln msg:

Fln protein: MGSCAVLYHYPCPDGAFAALAAHLYFSALRRPVSFYPNTVYNPIKVEDLPIEDYEVIYLLDFVGPNGFVSTLCSKDKRVVILDHHKTAMEMLQANEYDHKNCVKVIDMNRSGATIAYDYFTERLLSEKVGFAMVSMKENLPKSSSLVPEKDMQRVGLLYKYVEDADLWRWILPDSKAFSSGLKDMQIELSYKQNQRLFEQLLALDPRSVIEKGWDSLSHKQKLIDEALEQSYEISLGNGKFGNCLATEAGNISHLRSDIGNQLASKSLDLNLRPIGAVVYNVEELANNDIVKISLRSIGSEDTTEISQAYGGGGHRNASSFMINRKEFMKWKV*

Protein Length: 335

Fln nts: CGTCGTGACCTTGGCTGTCAGTTGAATACCAGCGTCATTGAGAACAGCGGGGGGAGAAAGTAGGCATTCCC_-_ATGGGCTCCTGTGCGGTTCTCTACCACTACCCATGTCCCGATGGAGCATTTGCAGCATTGGCTGCACATCTTTATTTCTCTGCACTGCGTCGCCCTGTGTCGTTCTACCCCAACACTGTTTACAACCCGATCAAAGTTGAAGACCTTCCCATAGAGGACTATGAAGTTATCTACCTTCTGGACTTTGTGGGTCCTAATGGTTTTGTCAGCACACTATGTTCGAAAGACAAAAGAGTGGTGATCCTAGATCATCATAAGACTGCGATGGAGATGCTCCAAGCAAATGAATATGATCATAAAAATTGTGTTAAGGTAATAGATATGAACCGGAGTGGAGCAACCATTGCATATGACTATTTTACTGAAAGGTTATTATCAGAAAAAGTAGGCTTTGCTATGGTCTCCATGAAAGAAAATTTGCCGAAAAGCTCATCGTTGGTACCAGAAAAAGATATGCAAAGAGTTGGCCTGCTTTACAAATATGTAGAAGATGCAGATCTTTGGAGGTGGATTCTTCCTGATAGCAAAGCCTTCAGCAGTGGATTGAAAGATATGCAAATTGAACTTAGTTACAAACAGAATCAAAGGCTATTTGAACAGTTATTAGCTCTTGATCCGAGAAGTGTAATTGAGAAAGGCTGGGATAGCTTATCACATAAGCAAAAGTTGATTGATGAAGCACTTGAACAATCATATGAGATTAGCCTTGGAAATGGAAAGTTCGGAAATTGCTTGGCTACAGAGGCTGGAAATATTTCTCATCTAAGGAGCGATATTGGAAATCAACTAGCTTCCAAGAGTCTTGATCTGAACCTAAGGCCTATTGGTGCTGTTGTCTATAATGTTGAAGAGCTAGCTAATAATGACATCGTTAAGATTAGTCTCCGCAGTATTGGTTCTGAAGACACAACTGAAATTTCTCAGGCATATGGAGGTGGAGGACATCGTAATGCGAGCTCATTTATGATAAATAGGAAAGAATTTATGAAATGGAAAGTATGA___GTTAACTTGAAAAAAAATGAAGGCTTTCAAATTACCTGGGAGAGAATTTTCCTTGTATCGAAACTAACAAATGTTTGCATTTTGTGTAATATGATAGCAATAGGTTCCTTGTGTTGAGGAGGGTTAAAGCTCAAATTGCTACGTTAGAGCTATTGAATTATTTCCAATCTTATGGTGAATCCCTTATAATAAAATGTCTCTATCCATCACAAGATATGAAATTCTGTGCATTTTTTCTAAAGGTTGAAATTTTTACC

Fln Alignment:

Contig8515___AVLYHYPCPDGAFAALAAHLYFSALRRPVSFYPNTVYNPIKVEDLPIEDYEVIYLLDFVGPNGFVSTLCSKDKRVVILDHHKTAMEMLQANEYDHKNCVKVIDMNRSGATIAYDYFTERLLSEKVGFAMVSMKE-NLPKSSSLVPEKDMQRVGLLYKYVEDADLWRWILPDSKAFSSGLKDMQIELSYKQNQRLFEQLLALDPRSVIEKGWDSLSHKQKLIDEALEQSYEISLGNGKFGNCLATEAGNISHLRSDIGNQLASKSLDLNLRPIGAVVYNVEELANNDIVKISLRSIGSEDTTEISQAYGGGGHRNASSFMINRKEFMKWKV
I1P366______________AVLYHYPCPDGAFAALAAHLYFSAAALPVCFFPNTVYDPIRSDALPFDEIKDVYLLDFVGPPGFVTDIAPKVESVTILDHHKTAFESLCGNPTLGENVNKVIDMQRSGATIAFDFFSNKLLT--IGSSLWNHRSGNSFNGVKYLPDNKLETVHKLFKFIEDGDLWRWTIPNSKAFSSGLKDLDIEFDVNINRKLFDQLLELDPEEVISRGQATLSHKQKLIDECLEKSYEIALGCGRFGNCLAVNADAISNLRSELGNQLADKSRNLNLRSIGAVVYKVPELNNDNMLKISLRSLNEEDTTSISKEYGGGGHRNASSFLLSVTEFDRWKV

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
82		12		87	0.992554
349		72	27		1.0
445		10		90	0.90298
471		15	84		0.999986
1014	93		6		0.999453
1131		25		75	0.996473
1135		25	75		0.996473
1280		90		10	0.90298
1284	90	10			0.90298
1290		11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain