SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8498

Length: 2993 nt

UniGene Fasta

>sp_v3.0_unigene8498
ATGGGGGAAAACACACTCTGCTCTCTCGCTATCATTCATTTCTCTACCAAATCCGGCATTTAGTTTTTGCTGAATCCTTGCAATTCGTTCGCGCTGCGTATTTATTGCAGGTTGCGGGTTCGAATCTCCTCCGGAAGTGGATATGGAGAACACAATGCGGGTCTGATGTCTCTCCGCGGGTTTGAAGCCTGACGAGGCTGCTCCGTAGGGTTGAGTTGGAGGTTGCTGAGGGAGCGGGAGCGGGAGGCGGGGGCGAGGCTGATCATGAGATCTGGATTGTGAATCCGCGTGGATCCGTGGATGATTTAACGGGGCGAAAGATCGAGTCTCGTCCCCGAGGGCTAAGCAGGCGGTTGAAATAAAGAGGTGAAGTTATTTTGAGCGGAGTCATGCAGCAGCCGTATGTTGTACTGGCCCTGTTGTGGATGCTGCTGCTGCATCACCCGCTCTGGCGAGTTTTTGCTAATACAGAAGGTGATGCTTTACATAGCCTTCGGTCGAACTTAATGGACCCAAACAATGTGCTTCAGAGTTGGGATCCAACCCTCGTCAATCCATGTACATGGTTTCATGTTACATGCAACAATGATAACAGTGTGATAAGAGTGGACTTGGGAAACGCACAACTTTCTGGTTCATTGGTTCCCCAGCTTGGCCAACTGAACAATCTGCAGTACTTGGAGCTTTATAGCAACAATATAAGTGGTCCCATCCCCAGTGATTTAGGCAACTTGACCAATCTTGTTAGCCTGGATTTATACCTGAACAATTTCACTGGTCAAATCCCGGAGTCACTGGGCAAACTGTCCAGGTTACGCTTCCTTCGGCTTAATAACAACAGTCTTGTAGGACGGATCCCAATGTCTCTCACAACCATTACTGCTCTTCAAGTCCTTGATCTGTCAAACAATAATCTCACAGGCGAGGTTCCAGCAAATGGTTCATTCTCTCTATTTACTCCTATCAGTTTCGGTGGCAATCAATACCTGTGTGGTCCAGTGGCACAAAAGCCATGTCCGGGATCTCCTCCTTTTTCTCCTCCTCCTCCGTTTGTACCACCCCCGCCAGTAACTGGAAGCAATGGAGCAAGGATGCAGAGCTCTTCCAGCACAGGAGCCATTGCTGGGGGAGTAGCTGCAGGTGCTGCCCTCTTATTTGCAGCTCCTGCAATTGGGTTCGCCTGGTGGCGTCGCAGAAAGCCACAGGAGCACTTCTTTGATGTACCTGCTGAGGAAGATCCAGAGGTTCACTTAGGCCAACTTAAGAGGTTCTCATTACGGGAATTACAGGTTGCAACTGATGGTTTTAGCAATAGAAACATTCTTGGCAGAGGTGGTTTTGGAAAGGTGTACAAAGGGCGCCTTGCAGATGGTTCCTTGGTGGCTGTAAAACGTCTGAAGGAAGAGCGTACACCAGGTGGAGAGTTGCAGTTTCAAACAGAAGTGGAGATGATAAGCATGGCAGTACATAGGAATCTCCTTCGACTACGTGGATTCTGCATGACACCCACTGAACGGCTGCTTGTTTATCCTTACATGGCCAATGGAAGTGTTGCTTCATGCCTACGAGAGAGGGCACCGAATGACCCACCCTTAGATTGGCCAACTCGCAAGCGCATAGCATTGGGTTCTGCAAGAGGTCTCTCCTACTTGCATGATCATTGTGATCCTAAGATTATTCACCGGGATGTCAAGGCTGCTAACATCTTACTGGATGAAGAATACGAGGCAGTGGTGGGGGATTTTGGCTTGGCAAAACTTATGGATTATAAGGACACACATGTTACGACGGCTGTTCGTGGAACCATTGGCCACATAGCACCTGAGTACCTTTCTACTGGAAAGTCTTCGGAAAAGACAGACGTATTTGGTTATGGAATCATGTTGCTGGAACTTATTACAGGACAACGGGCATTTGACCTTGCACGTTTAGCAAATGATGATGATGTCATGTTGCTTGACTGGGTTAAAGGCCTATTAAAAGAGAGAAGGCTTGATATGCTAGTTGATCCTGATCTTAAGAACAATTATGTTGAAGCAGAGGTGGAACAACTTATTCAAGTTGCATTACTTTGTACACAAGGGTCACCAATGGATAGACCAAAGATGTCTGAAGTGGTACGGATGTTGGAAGGGGATGGCTTAGCCGAGAGATGGGAGGAATGGCAAAAGGTGGAAGTCGTACGGAGCCAAGAAGTTGAACTTGTTCCTCATAGAAATTCAGAATGGATTGTCGACTCAACAGATAATCTTCATGCAGTTGAATTGTCTGGTCCAAGATGATAAGAGTTGAATTGTTTATTCAATCTTTGCAAAGCCAAAATTTTATTGAGTCCAAATTACAATGTCAATATGTATCGAGGTTGAATCGATGTATCATTTTCAAGCATATTTTAGTAGATGCGTCAATGTGCGAATGTAGAGAATATTCGTTGCAAGTCCTTAGATGGCTATGCTGGGTTTTGTCCCATGAGAATTTCTGTCGGGTTGCAGTCAAACCCGAAAGTTAGAAGGATTTCTTATGGTGCATCCCATCCAGGCAAAGATCTGGGCTCCTGTATTATGAATGGTTTGCTCTAGGAATCGAAGCTCCATTTCTGCTATTGAAGACTTCCTTTTTCAGTGCTAATATGTATTTAAACAGTCTGTCCACTTGACATATGCAACTACTTTTCCTGCCGAGAGTGTACTTTGATAAGACCACAATCTTTTGAGACTAGTACTAAATTTGGTCTCAGTTTCAAATCCAGAGTGGAAAATGAAGGAAAACAAATTTCATGAGTACCAAGCTTCTCCTAAATCCCATGAGCTGGGCTCTTAAATTCTCGATAATCCTCCGGAGTTTGAGAAAGATGTATGTTGTCAAAGGTAGATCTCAAGCTAGTGGATTCCTTAGTTTCACGGAATTGTTTTCTTAGAGCCAGACACATGCTCCTGAGTTACATTAAATTTACTTTTTATGGTGTTCAAATTGAAATACAGAAACTATGACTG

Ace file of the UniGene sp_v3.0_unigene8498

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Somatic embryogenesis receptor-like kinase 1 n=2 Tax=Coniferales RepID=D1MEH6_9CONI	-	-	86%
FL-Next	tr=Somatic embryogenesis receptor-like kinase 1; Pinus massoniana.	-	-	98%
Sma3	Predicted protein	-	-	-

Source	Gene names
Sma3	POPTRDRAFT_913861;

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G34210.1	SERK2, ATSERK2 somatic embryogenesis receptor-like kinase 2 chr1:12459078-12462752 FORWARD LENGTH=628	86%
RefSeq	Arabidopsis thaliana	NP_174683.1	somatic embryogenesis receptor kinase 2 [Arabidopsis thaliana]	86%
RefSeq	Populus trichocarpa	XP_002326014.1	predicted protein [Populus trichocarpa]	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5FY57

Fln msg:

Fln protein: MQQPYVVLALLWMLLLHHPLWRVFANTEGDALHSLRSNLMDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAQLSGSLVPQLGQLNNLQYLELYSNNISGPIPSDLGNLTNLVSLDLYLNNFTGQIPESLGKLSRLRFLRLNNNSLVGRIPMSLTTITALQVLDLSNNNLTGEVPANGSFSLFTPISFGGNQYLCGPVAQKPCPGSPPFSPPPPFVPPPPVTGSNGARMQSSSSTGAIAGGVAAGAALLFAAPAIGFAWWRRRKPQEHFFDVPAEEDPEVHLGQLKRFSLRELQVATDGFSNRNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERAPNDPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKERRLDMLVDPDLKNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWEEWQKVEVVRSQEVELVPHRNSEWIVDSTDNLHAVELSGPR*

Protein Length: 632

Fln nts: ATGGGGGAAAACACACTCTGCTCTCTCGCTATCATTCATTTCTCTACCAAATCCGGCATTTAGTTTTTGCTGAATCCTTGCAATTCGTTCGCGCTGCGTATTTATTGCAGGTTGCGGGTTCGAATCTCCTCCGGAAGTGGATATGGAGAACACAATGCGGGTCTGATGTCTCTCCGCGGGTTTGAAGCCTGACGAGGCTGCTCCGTAGGGTTGAGTTGGAGGTTGCTGAGGGAGCGGGAGCGGGAGGCGGGGGCGAGGCTGATCATGAGATCTGGATTGTGAATCCGCGTGGATCCGTGGATGATTTAACGGGGCGAAAGATCGAGTCTCGTCCCCGAGGGCTAAGCAGGCGGTTGAAATAAAGAGGTGAAGTTATTTTGAGCGGAGTC_-_ATGCAGCAGCCGTATGTTGTACTGGCCCTGTTGTGGATGCTGCTGCTGCATCACCCGCTCTGGCGAGTTTTTGCTAATACAGAAGGTGATGCTTTACATAGCCTTCGGTCGAACTTAATGGACCCAAACAATGTGCTTCAGAGTTGGGATCCAACCCTCGTCAATCCATGTACATGGTTTCATGTTACATGCAACAATGATAACAGTGTGATAAGAGTGGACTTGGGAAACGCACAACTTTCTGGTTCATTGGTTCCCCAGCTTGGCCAACTGAACAATCTGCAGTACTTGGAGCTTTATAGCAACAATATAAGTGGTCCCATCCCCAGTGATTTAGGCAACTTGACCAATCTTGTTAGCCTGGATTTATACCTGAACAATTTCACTGGTCAAATCCCGGAGTCACTGGGCAAACTGTCCAGGTTACGCTTCCTTCGGCTTAATAACAACAGTCTTGTAGGACGGATCCCAATGTCTCTCACAACCATTACTGCTCTTCAAGTCCTTGATCTGTCAAACAATAATCTCACAGGCGAGGTTCCAGCAAATGGTTCATTCTCTCTATTTACTCCTATCAGTTTCGGTGGCAATCAATACCTGTGTGGTCCAGTGGCACAAAAGCCATGTCCGGGATCTCCTCCTTTTTCTCCTCCTCCTCCGTTTGTACCACCCCCGCCAGTAACTGGAAGCAATGGAGCAAGGATGCAGAGCTCTTCCAGCACAGGAGCCATTGCTGGGGGAGTAGCTGCAGGTGCTGCCCTCTTATTTGCAGCTCCTGCAATTGGGTTCGCCTGGTGGCGTCGCAGAAAGCCACAGGAGCACTTCTTTGATGTACCTGCTGAGGAAGATCCAGAGGTTCACTTAGGCCAACTTAAGAGGTTCTCATTACGGGAATTACAGGTTGCAACTGATGGTTTTAGCAATAGAAACATTCTTGGCAGAGGTGGTTTTGGAAAGGTGTACAAAGGGCGCCTTGCAGATGGTTCCTTGGTGGCTGTAAAACGTCTGAAGGAAGAGCGTACACCAGGTGGAGAGTTGCAGTTTCAAACAGAAGTGGAGATGATAAGCATGGCAGTACATAGGAATCTCCTTCGACTACGTGGATTCTGCATGACACCCACTGAACGGCTGCTTGTTTATCCTTACATGGCCAATGGAAGTGTTGCTTCATGCCTACGAGAGAGGGCACCGAATGACCCACCCTTAGATTGGCCAACTCGCAAGCGCATAGCATTGGGTTCTGCAAGAGGTCTCTCCTACTTGCATGATCATTGTGATCCTAAGATTATTCACCGGGATGTCAAGGCTGCTAACATCTTACTGGATGAAGAATACGAGGCAGTGGTGGGGGATTTTGGCTTGGCAAAACTTATGGATTATAAGGACACACATGTTACGACGGCTGTTCGTGGAACCATTGGCCACATAGCACCTGAGTACCTTTCTACTGGAAAGTCTTCGGAAAAGACAGACGTATTTGGTTATGGAATCATGTTGCTGGAACTTATTACAGGACAACGGGCATTTGACCTTGCACGTTTAGCAAATGATGATGATGTCATGTTGCTTGACTGGGTTAAAGGCCTATTAAAAGAGAGAAGGCTTGATATGCTAGTTGATCCTGATCTTAAGAACAATTATGTTGAAGCAGAGGTGGAACAACTTATTCAAGTTGCATTACTTTGTACACAAGGGTCACCAATGGATAGACCAAAGATGTCTGAAGTGGTACGGATGTTGGAAGGGGATGGCTTAGCCGAGAGATGGGAGGAATGGCAAAAGGTGGAAGTCGTACGGAGCCAAGAAGTTGAACTTGTTCCTCATAGAAATTCAGAATGGATTGTCGACTCAACAGATAATCTTCATGCAGTTGAATTGTCTGGTCCAAGATGA___TAAGAGTTGAATTGTTTATTCAATCTTTGCAAAGCCAAAATTTTATTGAGTCCAAATTACAATGTCAATATGTATCGAGGTTGAATCGATGTATCATTTTCAAGCATATTTTAGTAGATGCGTCAATGTGCGAATGTAGAGAATATTCGTTGCAAGTCCTTAGATGGCTATGCTGGGTTTTGTCCCATGAGAATTTCTGTCGGGTTGCAGTCAAACCCGAAAGTTAGAAGGATTTCTTATGGTGCATCCCATCCAGGCAAAGATCTGGGCTCCTGTATTATGAATGGTTTGCTCTAGGAATCGAAGCTCCATTTCTGCTATTGAAGACTTCCTTTTTCAGTGCTAATATGTATTTAAACAGTCTGTCCACTTGACATATGCAACTACTTTTCCTGCCGAGAGTGTACTTTGATAAGACCACAATCTTTTGAGACTAGTACTAAATTTGGTCTCAGTTTCAAATCCAGAGTGGAAAATGAAGGAAAACAAATTTCATGAGTACCAAGCTTCTCCTAAATCCCATGAGCTGGGCTCTTAAATTCTCGATAATCCTCCGGAGTTTGAGAAAGATGTATGTTGTCAAAGGTAGATCTCAAGCTAGTGGATTCCTTAGTTTCACGGAATTGTTTTCTTAGAGCCAGACACATGCTCCTGAGTTACATTAAATTTACTTTTTATGGTGTTCAAATTGAAATACAGAAACTATGACTG

Fln Alignment:

Contig8498___RVFANTEGDALHSLRSNLMDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAQLSGSLVPQLGQLNNLQYLELYSNNISGPIPSDLGNLTNLVSLDLYLNNFTGQIPESLGKXXXXXXXXXXXXXXVGRIPMSLTTITALQVLDLSNNNLTGEVPANGSFSLFTPISFGGNQYLCGPVAQKXXXXXXXXXXXXXXXXXXXXTGSNGARMQSSSSTXXXXXXXXXXXXXXXXXXXXXXXWWRRRKPQEHFFDVPAEEDPEVHLGQLKRFSLRELQVATDGFSNRNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERAPNDPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKERRLDMLVDPDLKNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWEEWQKVEVVRSQEVELVPHRNSEWIVDSTDNLHAVELSGPR
D5FY57______________RVFANTEGDALHSLRSNLLVPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAQLSGSLVPQLGQLNNLQYLELYSNNISGPIPSDLGNLTNLVSLDLYLNNFTGLIPESLGKLSRLRFLRLNNNSLVGRIPMSLTTITALQVLDLSNNNLTGEVPANGSFSLFTPISFGGNQYLCGPVAQKPCPGSPPFSPPPPFVPPPPVAGSNGARVQSSSSTGAIAGGVAAGAALLFAAPAIGFAWWRRRKPQEHFFDVPAEEDPEVHLGQLKRFSLRELQVATDGFSNRNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERAQNDPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLIDWVKGLLKERRLDMLVDPDLKNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWEEWQKVEVVRSQEVELVPHRNSEWIVDSTDNLHAVELSGPR

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
1131			20	80	0.995493
1132			80	20	0.995493
1166	10	90			0.90298
1168			90	10	0.90298
1169		90	10		0.90298
1232		88		11	0.923564
1296		12	87		0.992554
1297	12		87		0.992554
1308	10			90	0.90298
1309			90	10	0.90298
1382		88		11	0.923564
1431	10		90		0.90298
1447	11		88		0.923564
1448	88	11			0.923564
1450			88	11	0.923564
1518		12		87	0.992554
1875	10			90	0.90298
1876		10	90		0.90298
1877	10		90		0.90298
2686		55		44	1.0
2699		10		89	1.0
2705			89	10	1.0

SSRs (tot: 3)

Start position	End position	Sequence	Length
427	438	TGC TGC TGC TGC	12
1036	1048	CTC CTC CTC CTC C	13
1936	1947	ATG ATG ATG ATG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain