SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8442

Length: 2666 nt

UniGene Fasta

>sp_v3.0_unigene8442
AGGTTTTCCAGCTCTCAGAGGAGCCAGTGTGTTCTTTTCATGGTCACCTTCTTGATGTATTTGATCTTTCATGGTCCCCATCACAGTATTTGCTTTCGTCTTCAATGGATAAAACAGTTCGACTATGGAAACTGGGACATGGAAGTTGTCTAAGGGTGTTCTCTCATAATGATATTGTGACCTGTATACAGTTCAATCCTGTTGATGAGAGATACTTCATAAGTGGTTCATTGGATGGAAAAGCCCGAATTTGGAGTATTCCAGACCGTCAGGTTGTTGACTGGAGTGATCTGCGCGAAATGGTCACTGCAGTATGTTACACTCCCGATGGACAGGGAGGACTAGTTGGATCTATCAAGGGAAGTTGCCGCTTCTATAATACATCAGGTAACAAGCTACAGTTAGAAAATCAACTGAATGTGTGTAGTAAGAAGAAAAAATCTTCTGGAAAGAAGATTACTGGTTTTCAGTTTGCACCAGGAGGAGATTCTCAGAAAGTATTGATAACGTCTGCAGATTCACGAGTTCGAGTTTATGATGGTTCTGAGCTTGTTTGCAAATATAAAGGTTTTCGGAACACCTGCAGTCAAATTTCTGCCTCATTTGCACCGAATGGGCAGCATTTTGTTTGTGCTAGTGAAGATTCACGTGTTTATATTTGGAATCATGAGAGCCCTCGTGGTTCTGGTTCAAGGCATGAAAAGTCCTCTTGGTCACATGAACACTTTCTATCACAGGGTGTTTCAGTTGCAATTCCTTGGTCTGGTATGAAGCTTCAGCCTCCAGTTTGGAATTCACCTGAATTTATGCTTGGTCAGAGGCACAATTTGCTTTCATTGCAGGGAGGTAAGGATGTTGGATATCAGAATGGTCTTCTTTCAAGAGAAGCTGGTGAGGGGCAGGAATCAGAGACTCCTTTGCATTATATTTCTCAAGTATCACATTCATGTGGTTCACAGAATATGGTAGATAGGGATGGCCAAGATGATCTTTCTAGATATTCAGCTTGTATCTCGGATTCACGTCTGTCATCTTTTATGGCTTTCCCTGAATCTCCTGGAAACCCAGATGATCTAAATTCGAAAGTTTTTTTCTCTGATAGCTCGTCTAAAGGCTCAGCAACATGGCCTGAGGAGAAGCTTCCTCCAACAAGAAAACAGAGCCGATCAAATAGTACTTCTTCTCACTATGACACTCTGAAGACTCATCTTGGTAATACCATCCAAGGCCAATCTGGAGCTTCTGCAGCTGTGGCATGGGGATTAGTAATAGTCACTGCTGGTCGTGGGGGAGAGATCAGATCATTTCAGAATTATGGCTTGCCTGTTCGTCTTTGAGAAGTCAAGTATTTATAGTTAAGTGAGAGAGCAAGGAAACTTTACCCTTTTAAATTGTCATTTCAGCATAAATACACATTTGTATTGAATGCTTTCCTCATCTCAAATTGTATTTAATCTGCGGGCAGTATGGGAAGATTGCCATTCTTTCAGAAAATGAAGGTGCATCTTGATGCTTCCAAGCGGTCCTTGCATTTTTTTAGAGTATTGTGGGCTTCCAACAATGTGGAGTTGGATAAAGTTTGACACTCGATCACAATTGTCCAATCTGTTCGTTATCATTTTCCTTCGCTACTCAAAAAAGTGTATGGCATCTGCTTGGGCCCTCTTATGACCTGCTGATCTGCTCTCCATTGAAGCAGAAAAAGTGGGGGAGGGATCAATCAATAGCTCGACTGTGCAATGAACCCTCTGCTCCATTCATCCAACCAGCTGAGAATGTGTGGTTATCAGTACCACCGACTATACACTTAAGTTATTCAGTTGATGCAGAGGTGCTCCTGAAGATTGTGTCGTCCCTATTGCAGCATGTTCAGCAAGGGACCGTTAGCCCTTGCCTTCCCCAAGTATATAATGTGTATGGCAAGATGACTTGTCCAACAGCCTTGAAGATGCAGTCAAGAGTGCAAGCGATTTCCACTTGTTTAGTTCCCTGAAGCTGGATTTCTTGAGCCAGAGGCACGTTTAACTAAATTTCGTTTAGTTCACCATGACTATTCGTTGAACTTAATGGGATTTAGTTTAACGTAGCCAGCCCGCTTCCGCATTATCTTAGAAACGGATGTATATTGGAACAGACCAGGTGCTTTAGGTGATTAAGTGCTGGACAAAACGAGGATCCCTTGAAATTCTTGAGAGAATTTTTTGTTGTTGTTGAGATGAACAATATTTGCGAGTTATCACAAATGACCATGCTCTTCGTGCCTGAGACTTTTCCCTGTAGTATAGACTTGAGTTGTCCACGTGGTAGTGATGGTTTTGCTTTAACCCAATGCTATGTCCATGTAAACAGATATTTTGGACATTTTTTGATCTTACTAGTACTGCTTAAGAATTTGTAAATGTAACTGCTGCCATGAAGATCGTTAGGGCTTTGACAGCAGCATTGTTGGTTAGCCAATTTAGGATTTTATGATTAAATGCTAGTGTTTTCCAAGTGGTTGTAGCATATCCACTGTTATAACATATTCAGGAGTTGAAAGATGAAATATGAAGGGTCCTACAGACGACCTAAGTTTCAATTCTTTTTTGGATTCGACAAAGGACGGTGGATACAATTGTTATCCTGCAAGAAATGAAATAAATGCGCACGAGTGCCTTTTTGTCGTG

Ace file of the UniGene sp_v3.0_unigene8442

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb\|AAK50098.1\|AF372960_1 AT3g15470/MJK13_13 [Arabidopsis thaliana] gb\|AAF35413.1\| unknown protein [Arabidopsis thaliana] dbj\|BAB02376.1\| WD-40 repeat protein-like [Arabidopsis thaliana] gb\|A	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	26%
Sma3	WD-repeat protein, putative	-	-	3.187e-14	-

Source	Gene names
Sma3	AT1G64610; At1g48870; At1g64610; At2g37670; At3g15470; At5g02430; At5g24320; At5g42010; At5g53500; At5g54200; F27K7.10; GSVIVT00006677001; GSVIVT00008646001; GSVIVT00021311001; GSVIVT00027633001; GSVIVT00034856001; GSVIVT00037226001; H0402C08.15; H0801D08

Source	GOs	Term	Type	Identity
Sma3	protein phosphatase type 2A complex	GO:0000159	Cellular Component	-
Sma3	protein phosphatase type 2A regulator activity	GO:0008601	Molecular Function	-
Sma3	signal transduction	GO:0007165	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2A, regulatory subunit PR55	IPR000009	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Dynamin, GTPase domain	IPR001401	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G15470.1	Transducin/WD40 repeat-like superfamily protein chr3:5216630-5219868 REVERSE LENGTH=883	50%
RefSeq	Arabidopsis thaliana	NP_566515.1	transducin/WD40 domain-containing protein [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002317512.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: your sequence is longer than subject: 445 - 314

Fln protein: VFQLSEEPVCSFHGHLLDVFDLSWSPSQYLLSSSMDKTVRLWKLGHGSCLRVFSHNDIVTCIQFNPVDERYFISGSLDGKARIWSIPDRQVVDWSDLREMVTAVCYTPDGQGGLVGSIKGSCRFYNTSGNKLQLENQLNVCSKKKKSSGKKITGFQFAPGGDSQKVLITSADSRVRVYDGSELVCKYKGFRNTCSQISASFAPNGQHFVCASEDSRVYIWNHESPRGSGSRHEKSSWSHEHFLSQGVSVAIPWSGMKLQPPVWNSPEFMLGQRHNLLSLQGGKDVGYQNGLLSREAGEGQESETPLHYISQVSHSCGSQNMVDRDGQDDLSRYSACISDSRLSSFMAFPESPGNPDDLNSKVFFSDSSSKGSATWPEEKLPPTRKQSRSNSTSSHYDTLKTHLGNTIQGQSGASAAVAWGLVIVTAGRGGEIRSFQNYGLPVRL*

Protein Length: 446

Fln nts: AGGTTTTCCAGCTCTCAGAGGAGCCAGTGTGTTCTTTTCATGGTCACCTTCTTGATGTATTTGATCTTTCATGGTCCCCATCACAGTATTTGCTTTCGTCTTCAATGGATAAAACAGTTCGACTATGGAAACTGGGACATGGAAGTTGTCTAAGGGTGTTCTCTCATAATGATATTGTGACCTGTATACAGTTCAATCCTGTTGATGAGAGATACTTCATAAGTGGTTCATTGGATGGAAAAGCCCGAATTTGGAGTATTCCAGACCGTCAGGTTGTTGACTGGAGTGATCTGCGCGAAATGGTCACTGCAGTATGTTACACTCCCGATGGACAGGGAGGACTAGTTGGATCTATCAAGGGAAGTTGCCGCTTCTATAATACATCAGGTAACAAGCTACAGTTAGAAAATCAACTGAATGTGTGTAGTAAGAAGAAAAAATCTTCTGGAAAGAAGATTACTGGTTTTCAGTTTGCACCAGGAGGAGATTCTCAGAAAGTATTGATAACGTCTGCAGATTCACGAGTTCGAGTTTATGATGGTTCTGAGCTTGTTTGCAAATATAAAGGTTTTCGGAACACCTGCAGTCAAATTTCTGCCTCATTTGCACCGAATGGGCAGCATTTTGTTTGTGCTAGTGAAGATTCACGTGTTTATATTTGGAATCATGAGAGCCCTCGTGGTTCTGGTTCAAGGCATGAAAAGTCCTCTTGGTCACATGAACACTTTCTATCACAGGGTGTTTCAGTTGCAATTCCTTGGTCTGGTATGAAGCTTCAGCCTCCAGTTTGGAATTCACCTGAATTTATGCTTGGTCAGAGGCACAATTTGCTTTCATTGCAGGGAGGTAAGGATGTTGGATATCAGAATGGTCTTCTTTCAAGAGAAGCTGGTGAGGGGCAGGAATCAGAGACTCCTTTGCATTATATTTCTCAAGTATCACATTCATGTGGTTCACAGAATATGGTAGATAGGGATGGCCAAGATGATCTTTCTAGATATTCAGCTTGTATCTCGGATTCACGTCTGTCATCTTTTATGGCTTTCCCTGAATCTCCTGGAAACCCAGATGATCTAAATTCGAAAGTTTTTTTCTCTGATAGCTCGTCTAAAGGCTCAGCAACATGGCCTGAGGAGAAGCTTCCTCCAACAAGAAAACAGAGCCGATCAAATAGTACTTCTTCTCACTATGACACTCTGAAGACTCATCTTGGTAATACCATCCAAGGCCAATCTGGAGCTTCTGCAGCTGTGGCATGGGGATTAGTAATAGTCACTGCTGGTCGTGGGGGAGAGATCAGATCATTTCAGAATTATGGCTTGCCTGTTCGTCTTTGA___GAAGTCAAGTATTTATAGTTAAGTGAGAGAGCAAGGAAACTTTACCCTTTTAAATTGTCATTTCAGCATAAATACACATTTGTATTGAATGCTTTCCTCATCTCAAATTGTATTTAATCTGCGGGCAGTATGGGAAGATTGCCATTCTTTCAGAAAATGAAGGTGCATCTTGATGCTTCCAAGCGGTCCTTGCATTTTTTTAGAGTATTGTGGGCTTCCAACAATGTGGAGTTGGATAAAGTTTGACACTCGATCACAATTGTCCAATCTGTTCGTTATCATTTTCCTTCGCTACTCAAAAAAGTGTATGGCATCTGCTTGGGCCCTCTTATGACCTGCTGATCTGCTCTCCATTGAAGCAGAAAAAGTGGGGGAGGGATCAATCAATAGCTCGACTGTGCAATGAACCCTCTGCTCCATTCATCCAACCAGCTGAGAATGTGTGGTTATCAGTACCACCGACTATACACTTAAGTTATTCAGTTGATGCAGAGGTGCTCCTGAAGATTGTGTCGTCCCTATTGCAGCATGTTCAGCAAGGGACCGTTAGCCCTTGCCTTCCCCAAGTATATAATGTGTATGGCAAGATGACTTGTCCAACAGCCTTGAAGATGCAGTCAAGAGTGCAAGCGATTTCCACTTGTTTAGTTCCCTGAAGCTGGATTTCTTGAGCCAGAGGCACGTTTAACTAAATTTCGTTTAGTTCACCATGACTATTCGTTGAACTTAATGGGATTTAGTTTAACGTAGCCAGCCCGCTTCCGCATTATCTTAGAAACGGATGTATATTGGAACAGACCAGGTGCTTTAGGTGATTAAGTGCTGGACAAAACGAGGATCCCTTGAAATTCTTGAGAGAATTTTTTGTTGTTGTTGAGATGAACAATATTTGCGAGTTATCACAAATGACCATGCTCTTCGTGCCTGAGACTTTTCCCTGTAGTATAGACTTGAGTTGTCCACGTGGTAGTGATGGTTTTGCTTTAACCCAATGCTATGTCCATGTAAACAGATATTTTGGACATTTTTTGATCTTACTAGTACTGCTTAAGAATTTGTAAATGTAACTGCTGCCATGAAGATCGTTAGGGCTTTGACAGCAGCATTGTTGGTTAGCCAATTTAGGATTTTATGATTAAATGCTAGTGTTTTCCAAGTGGTTGTAGCATATCCACTGTTATAACATATTCAGGAGTTGAAAGATGAAATATGAAGGGTCCTACAGACGACCTAAGTTTCAATTCTTTTTTGGATTCGACAAAGGACGGTGGATACAATTGTTATCCTGCAAGAAATGAAATAAATGCGCACGAGTGCCTTTTTGTCGTG

Fln Alignment:

Contig8442___DKTVRLWKLGHGSCLRVFS-HNDIVTCIQFNPVDERYFISGSLDGKARIWSIPDRQVVDWSDLR-EMVTAVCYTPDGQGGLVGSIKGSCRFYNTSGNKLQLENQLNVCXXXXXXXXXXITGFQFAPGGDSQKVLITSADSRVRVYDGS--ELVCKYKGFRNTCSQISASFA-PNGQHFVCASEDSRVYIWN
A9NPC1______________DKTLRIWDVHTGDCIKTLKGHTNYVFCVNFNP-QSNLIVSGSFDETVRIWDVRTGKCLKVLPAHSDPVTAVHFNRDGSLIVSSSYDGLCRIWDSATG--------HCLKTLIDDENPPVSFVNFSPNG--KFILAGTLDNTLRLWNFATGKFLKTYTGHVNSKYCISSTFSVTNGKYIVSGSEDNCVYLWD

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1346	14	85			0.993533
1347	85	14			0.993533
1349			85	14	0.993533
1825	87	12			0.992554
1834	85		14		0.993533
1898		14		85	0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
2202	2213	TTG TTG TTG TTG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain