SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8413

Length: 2582 nt

UniGene Fasta

>sp_v3.0_unigene8413
ATATTATACCATCTGGTTTTAGACAAACAGAAGGTTTGAACCCTACATTCAGGACAGTTGAATCAAATAACTGCGGAAGAAATTTGCAGAGCAGTCTCAGTGAATCCATTAGGGGTGAAGGCATTCTTAGAGCAGAGTTGTTTCAGCCAGGGACTCCTCATCTAAGTGTCTTGAAACAAACAGAAAGGCAGCTGTCTGGTCCAGGACTCCAGCATTTTGTGCAAACTAAGAACCCTTCAGCATTTTCAAGACCACCAGTGCAGAGTAACCTTGTAGTAGGAATAGACCAAAATAAGAAGCCTTTGGCTGAGGTGAATACTAACCATCTTCTTTACAAGGCTCCTACATTTTCTTCTGCTAACATGGAAGCTCCTGTTTCTGATTCTAGGCAGTGCACGGCATCCGGTGTTTCCTGGTCCAACACATCAGGGCAATTTGAGACTTTTTTAGAAACAGTAAGAAATGATCTTGTACCTTCTGAAGGGGTTGACTTCTCAATGTCTGCAGCACATGGAATAGAGCCTCAGCCCTGGGACAAAGAGACCTTGACAAAAGATATGTCTTCTTTGCTTTTTCAAGATACTATGGCTGAAAATCCATTATCATTGAGAGAAAGCTCTAAGGTTTCAGAGGCTGTCTTTGGTGAGCTTCTTCCTGTGACAGATGAATACGGTTATAATGGATTTGAGGACTTTGATAAGTACTTAAAATCTTTAATGAAAGGGCAGGATAATTCAAATAGCTCAATATCACTACCTGCTGTTGATGAAATATTTGATGCATTAGGACCTGTTTCTAGGAATGGACAAGATCATGTTATCTGGGATGATATGTTTATGCCATTGGGAGATGGAAGCAGTGCAAATTTTTCCTCTTATTCGTTTGGAGTTTCTGCTGGCACAGCAAACCCCTCTGATCCGTCCATAGATAGGAGCCTCCAGGGAGGGATTTTTCTGAGAGGAAGTCTGAACATCTTTTAGATGCTGTAGTAGCTAACATACGTGCACCACTAAATCAGAGCACAGATGACAATATGTCAACTGAGCATACGGTCTCAAAATTAAGCAGTGCACCTTCGCTATACAGTGCCTCAGTTAAGGCTGATTCTTGTTCAACTGGACCATTGATTGGTTGCGAGCAAAAGCAATCTGAGTTTGTAGGCCATTCCCAGACTGGAGATGATGCTGATATAAAAAAATTGCAAAACTCTTTAACTGATGAATACCAGCGAGAAAGAGCTGTAAAAAGATCACTGCATGATTGTTCTTTAAAGTTTCAGCCAAGTTCCTGGGCTGAAGATTGTCATAGTGCAAAGTGCGAAAATATGGGGCTTGCTCATACAAAGAAGTCAGATGAGCCAGTCAAAGTGAATAGGAAAAGAGCCAAACCTGGTGAGAGTACCAGACCAAGGCCTAAGGATAGACAGCAGATTCAAGATCGAGTTAGAGAGCTGAGAGAAATTGTACCAAATGGTACCAAGTGCAGTATTGATGCTTTATTGGACCGCACCATCAAGCATATGCTATTCTTGCAGAGTGTCACCAAGCATGCGGAGAAACTAAAGCATAGTGGCGAGCCAAAGGTGCTTGATAAGGATGGCAGTTTTCTTTCTAAAGGTAACCTGGAAAGTGGTGCAAGTTGGGCAGTAGAATTGGGTGGTCAAACCATGGGGTGCCCTATTATAGTGGAGAATATGAATCAGCCCCGACAATTGCTTATAGAGATGCTTTGTGATGAGCGGGGCCTCTTCCTTGAAATAGCTGACAGCATTCGAAGCTTGAGGCTTACGATTTTAAAGGGAGTCATGGAAGCTCGCACTGGCAAGATCTGGGCTCGTTTTGTTGTTGAGGCAGATACAGATGTTCAAAGATTGGATATTTTGTGGTCACTGATGCAAATATTGCAACAAAATACGAAGAACGGTGTGAGTCTAACTCACCAGCCTAGTGTAGTTGCACATCAAGGCATGTGGTTCCCAAGTGTTCAGTGTGTTTCAGCAACCTCTGATGCCTCTCACCTCTAGCATGGATATTGGATTATGTATATGTATTCTTGTCGAACATGTGATGCTCGTGGTTGCTGACTTGACTTGGATCGCTGCACTAAATTTTTAACCAAATGCATGATATTTTAATGTTATTTAACTCAACAGCTACAGGCTTTTGCAGGGGAAATGCAACAACCTTATCTACTTTCCTGGGTGGTAAATTTTTCAAAGGATTCGCAGTGGCATTTCTTTTGAACAATTTCCCACTTGGTTTCAAAGTTGTGTTATAGATAAAAGACTTGTATTCTAAAGGTCTTTCTTCCCATCCATCATGTTGGAATATTTCTCCCATTTTTAAGGTAATGGGCATCTGAATATTAACCAAATCATCCATTACTGTGATGAGCACTTGTCTTGTTATTGTGTATTCTATGAGCAAATATAAACGATGCTATGGATCTTGCTATGTAACCTTCGAAACTTTGGTTTTACCTTGTAAACGAGCCTGATAGCTTTTTTAACAATCGTCGAGGGATTGGTGTTACCTTTCGATTTTAACATGAATGATAAATTTCTGCTGCGTAGTTTGGATAGG

Ace file of the UniGene sp_v3.0_unigene8413

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Helix-loop-helix DNA-binding n=2 Tax=Medicago truncatula RepID=Q2HVX8_MEDTR	-	-	0.0	50%
FL-Next	sp=Transcription factor LHW; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	45%
Sma3	Putative uncharacterized protein At1g64625	-	-	7.399e-09	-

Source	Gene names
Sma3	AT2G27230; At1g06150; At1g64625; At2g27230; At2g31280; At2g31280/F16D14.12; F1N19; GSVIVT00000548001; GSVIVT00007504001; GSVIVT00017515001; GSVIVT00021373001; LOC_Os11g06010; LOC_Os12g06330; MtrDRAFT_AC148290g20v2; MtrDRAFT_AC151522g33v2; Os01g0865600; Os

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	maintenance of root meristem identity	GO:0010078	Biological Process	-
Sma3	stele development	GO:0010479	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3		IPR001092	-	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G27230.1	LHW transcription factor-related chr2:11650895-11653840 FORWARD LENGTH=650	45%
RefSeq	Arabidopsis thaliana	NP_001031430.1	transcription factor-related protein [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002298267.1	predicted protein [Populus trichocarpa]	47%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9XIN0

Fln msg: Unexpected stop codon in the beginning of your sequence,

Fln protein: YYTIWF*TNRRFEPYIQDS*IK*LRKKFAEQSQ*IH*G*RHS*SRVVSARDSSSKCLETNRKAAVWSRTPAFCAN*EPFSIFKTTSAE*PCSRNRPK*EAFG*GEY*PSSLQGSYIFFC*HGSSCF*F*AVHGIRCFLVQHIRAI*DFFRNSKK*SCTF*RG*LLNVCSTWNRASALGQRDLDKRYVFFAFSRYYG*KSIIIERKL*GFRGCLW*ASSCDR*IRL*WI*GL**VLKIFNERAG*FK*LNITTCC**NI*CIRTCF*EWTRSCYLG*YVYAIGRWKQCKFFLLFVWSFCWHSKPL*SVHR*EPPGRDFSERKSEHLLDAVVANIRAPLNQSTDDNMSTEHTVSKLSSAPSLYSASVKADSCSTGPLIGCEQKQSEFVGHSQTGDDADIKKLQNSLTDEYQRERAVKRSLHDCSLKFQPSSWAEDCHSAKCENMGLAHTKKSDEPVKVNRKRAKPGESTRPRPKDRQQIQDRVRELREIVPNGTKCSIDALLDRTIKHMLFLQSVTKHAEKLKHSGEPKVLDKDGSFLSKGNLESGASWAVELGGQTMGCPIIVENMNQPRQLLIEMLCDERGLFLEIADSIRSLRLTILKGVMEARTGKIWARFVVEADTDVQRLDILWSLMQILQQNTKNGVSLTHQPSVVAHQGMWFPSVQCVSATSDASHL*

Protein Length: 675

Fln nts: ATATTATACCATCTGGTTTTAGACAAACAGAAGGTTTGAACCCTACATTCAGGACAGTTGAATCAAATAACTGCGGAAGAAATTTGCAGAGCAGTCTCAGTGAATCCATTAGGGGTGAAGGCATTCTTAGAGCAGAGTTGTTTCAGCCAGGGACTCCTCATCTAAGTGTCTTGAAACAAACAGAAAGGCAGCTGTCTGGTCCAGGACTCCAGCATTTTGTGCAAACTAAGAACCCTTCAGCATTTTCAAGACCACCAGTGCAGAGTAACCTTGTAGTAGGAATAGACCAAAATAAGAAGCCTTTGGCTGAGGTGAATACTAACCATCTTCTTTACAAGGCTCCTACATTTTCTTCTGCTAACATGGAAGCTCCTGTTTCTGATTCTAGGCAGTGCACGGCATCCGGTGTTTCCTGGTCCAACACATCAGGGCAATTTGAGACTTTTTTAGAAACAGTAAGAAATGATCTTGTACCTTCTGAAGGGGTTGACTTCTCAATGTCTGCAGCACATGGAATAGAGCCTCAGCCCTGGGACAAAGAGACCTTGACAAAAGATATGTCTTCTTTGCTTTTTCAAGATACTATGGCTGAAAATCCATTATCATTGAGAGAAAGCTCTAAGGTTTCAGAGGCTGTCTTTGGTGAGCTTCTTCCTGTGACAGATGAATACGGTTATAATGGATTTGAGGACTTTGATAAGTACTTAAAATCTTTAATGAAAGGGCAGGATAATTCAAATAGCTCAATATCACTACCTGCTGTTGATGAAATATTTGATGCATTAGGACCTGTTTCTAGGAATGGACAAGATCATGTTATCTGGGATGATATGTTTATGCCATTGGGAGATGGAAGCAGTGCAAATTTTTCCTCTTATTCGTTTGGAGTTTCTGCTGGCACAGCAAACCCCTCTGATCCGTCCATAGATAGGAGCCTCCAGGGAGGGATTTTTCTGAGAGGAAGTCTGAACATCTTTTAGATGCTGTAGTAGCTAACATACGTGCACCACTAAATCAGAGCACAGATGACAATATGTCAACTGAGCATACGGTCTCAAAATTAAGCAGTGCACCTTCGCTATACAGTGCCTCAGTTAAGGCTGATTCTTGTTCAACTGGACCATTGATTGGTTGCGAGCAAAAGCAATCTGAGTTTGTAGGCCATTCCCAGACTGGAGATGATGCTGATATAAAAAAATTGCAAAACTCTTTAACTGATGAATACCAGCGAGAAAGAGCTGTAAAAAGATCACTGCATGATTGTTCTTTAAAGTTTCAGCCAAGTTCCTGGGCTGAAGATTGTCATAGTGCAAAGTGCGAAAATATGGGGCTTGCTCATACAAAGAAGTCAGATGAGCCAGTCAAAGTGAATAGGAAAAGAGCCAAACCTGGTGAGAGTACCAGACCAAGGCCTAAGGATAGACAGCAGATTCAAGATCGAGTTAGAGAGCTGAGAGAAATTGTACCAAATGGTACCAAGTGCAGTATTGATGCTTTATTGGACCGCACCATCAAGCATATGCTATTCTTGCAGAGTGTCACCAAGCATGCGGAGAAACTAAAGCATAGTGGCGAGCCAAAGGTGCTTGATAAGGATGGCAGTTTTCTTTCTAAAGGTAACCTGGAAAGTGGTGCAAGTTGGGCAGTAGAATTGGGTGGTCAAACCATGGGGTGCCCTATTATAGTGGAGAATATGAATCAGCCCCGACAATTGCTTATAGAGATGCTTTGTGATGAGCGGGGCCTCTTCCTTGAAATAGCTGACAGCATTCGAAGCTTGAGGCTTACGATTTTAAAGGGAGTCATGGAAGCTCGCACTGGCAAGATCTGGGCTCGTTTTGTTGTTGAGGCAGATACAGATGTTCAAAGATTGGATATTTTGTGGTCACTGATGCAAATATTGCAACAAAATACGAAGAACGGTGTGAGTCTAACTCACCAGCCTAGTGTAGTTGCACATCAAGGCATGTGGTTCCCAAGTGTTCAGTGTGTTTCAGCAACCTCTGATGCCTCTCACCTCTAG___CATGGATATTGGATTATGTATATGTATTCTTGTCGAACATGTGATGCTCGTGGTTGCTGACTTGACTTGGATCGCTGCACTAAATTTTTAACCAAATGCATGATATTTTAATGTTATTTAACTCAACAGCTACAGGCTTTTGCAGGGGAAATGCAACAACCTTATCTACTTTCCTGGGTGGTAAATTTTTCAAAGGATTCGCAGTGGCATTTCTTTTGAACAATTTCCCACTTGGTTTCAAAGTTGTGTTATAGATAAAAGACTTGTATTCTAAAGGTCTTTCTTCCCATCCATCATGTTGGAATATTTCTCCCATTTTTAAGGTAATGGGCATCTGAATATTAACCAAATCATCCATTACTGTGATGAGCACTTGTCTTGTTATTGTGTATTCTATGAGCAAATATAAACGATGCTATGGATCTTGCTATGTAACCTTCGAAACTTTGGTTTTACCTTGTAAACGAGCCTGATAGCTTTTTTAACAATCGTCGAGGGATTGGTGTTACCTTTCGATTTTAACATGAATGATAAATTTCTGCTGCGTAGTTTGGATAGG

Fln Alignment:

Contig8413___SEHLLDAVVANIRAPLNQSTDDNM-STEHTVSKLSSAPSLYSASVKADSCSTGPLIGCEQKQSEFVGHSQTGDDADIKKLQNSLTDEYQRERAVKRSLHDCSLKFQPSSWAEDCHSAKCENMGLAHTKKSDEPVKVNRKRAKPGESTRPRPKDRQQIQDRVRELREIVPNGTKCSIDALLDRTIKHMLFLQSVTKHAEKLKHSGEPKVLDKDGSFLSKGNLESGASWAVELGGQTMGCPIIVENMNQPRQLLIEMLCDERGLFLEIADSIRSLRLTILKGVMEARTGKIWARFVVEADTDVQRLDILWSLMQILQQNTKNG
Q9XIN0______________TDHLLDAVVSGACSSTKQISDETSESCKTTLTKVSNS----SVTTPSHSSPQGSQL-FEKKHGQPLGPSSVYGS-------------------------------QISSWVEQAHSLKREGSPRMVNKNETAKPANNRKRLKPGENPRPRPKDRQMIQDRVKELREIIPNGAKCSIDALLERTIKHMLFLQNVSKHSDKLKQTGESKIMKEDG---------GGATWAFEVGSKSMVCPIVVEDINPPRIFQVEMLCEQRGFFLEIADWIRSLGLTILKGVIETRVDKIWARFTVEASRDVTRMEIFMQLVNILEQTMKCG

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
801			88	11	0.923564
984		25		75	0.996473
1193	33			66	0.997452
1916	66		33		0.997452
1917		66	33		0.997452
2035	12			87	0.992554
2040			12	87	0.992554
2177	90	10			0.90298
2180		90		10	0.90298
2181	90	10			0.90298
2321		45		54	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain