SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8334

Length: 1518 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8334

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-binding protein (Fragment) n=1 Tax=Catharanthus roseus RepID=A1DR78_CATRO	-	-	2.0e-30	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Homeodomain	IPR001356	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3		IPR012287	-	-
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002311597.1	predicted protein [Populus trichocarpa]	3.0e-35	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYL7

Fln msg:

Fln protein: MSFNFGSGNEHAVNGFLHLQSGLFSRRFHANGHGHRSGSGFYGSVLYDNPSSSEEVGLCDDDEISGGLHSKKRRLSVQQVRSLETSFETESKLEPERKMQLAAELGLQPRQVAVWFQNRRARWKTKQLERDYDDLKQQYEEVVAEKKKLEGQVARLTQEVVAAKGEKKDQKTLISSKSEEENGLQKTTTTTTEEMQSTSPSFCSDADSNRKLLLSSPSRNIQAAVCKTDEENEERNLQALYSNDFHDQLDMYRYLMAAEQNHHGPDWLNFENL*

Protein Length: 275

Fln nts: GAGGTAATCGAGTTTAACGACTCCGGCCATGGCGAATATATTTATATAGTTATTTTTATGGGGTTTCGAATTCAAGAGATTCAGTGAAGATTTAGACACAGGCAATATATTGTTTTCTACTTTGGTATCTAGATTTAATAATAATTATTAATTATTAAAAGCCTGGTGCATTGTGTGTGTGAAAGGGAGACAGAACGACGCCGAATACTCGCCTCGAGATTCGAAACACTCACCTCCCGGATTACGATAATGGCGATAGCCATTGCCAGGCTGCGGTTGAGCCGGCTTTGTTAATGATAACATTAAAGGTCGATTTACAGAGAGTGCTATAAGTTTGATGGTGGATTAGGAAACAGAGGAGGATTTGCACTGATATACACAACAAGC_-_ATGTCCTTCAATTTCGGGTCCGGTAATGAACATGCGGTGAATGGATTTTTGCATTTGCAGTCCGGCTTGTTCTCTCGAAGGTTTCATGCGAATGGTCACGGCCATCGGAGCGGATCCGGGTTCTATGGCAGTGTTTTGTACGATAACCCAAGCAGCAGCGAGGAGGTCGGGCTGTGCGATGACGATGAGATCAGCGGAGGCCTTCATTCGAAAAAGAGGAGGCTGAGCGTCCAGCAGGTGAGGTCGCTGGAGACGAGTTTTGAAACCGAGAGCAAACTCGAACCGGAGCGGAAGATGCAGCTCGCAGCGGAATTAGGTCTCCAACCGAGACAGGTAGCGGTGTGGTTCCAGAACCGTCGGGCGCGCTGGAAGACGAAGCAGCTCGAACGGGACTACGATGATCTCAAGCAGCAGTACGAGGAAGTTGTCGCGGAGAAAAAGAAGCTCGAAGGACAGGTGGCAAGATTGACGCAAGAGGTCGTGGCCGCTAAAGGTGAAAAAAAGGATCAAAAGACATTAATTTCATCCAAAAGCGAAGAAGAAAACGGTCTGCAGAAGACGACGACGACTACTACAGAAGAAATGCAGAGCACGAGCCCGAGCTTCTGCAGCGATGCCGATTCCAACCGAAAGCTTTTGCTGTCATCTCCTTCCCGCAATATCCAAGCGGCAGTCTGCAAGACAGATGAAGAGAACGAAGAAAGGAATTTACAAGCCCTGTATTCAAATGATTTCCATGACCAGCTCGACATGTATCGATATCTGATGGCGGCGGAGCAGAATCATCACGGCCCGGATTGGTTGAATTTCGAAAACCTTTAA___GACATTAAACTCATCGCCAGTAAATATTATGTAAAGCAGTGTATATTATTTTAATAAGACAGCCATTTTGAAACAGCTTGTTGGTCCGGCTGTGGACCGGGACCTGTGTAAACGACCCGAGGTTCAAATCCGGGTTCGGATGCCATGGAAAACCTGAACGGAACAGGCTTAATTGTGAGCTGATGCTATGTAAATGACTTGGATTTAAATCTAATGATTCGAGTTCGAAAGCTTGCTTGGGATGTCATGCAAGTAGCCCGTGTTTAAATTTGAGATGCAAGGCCATGTAAATGATTTAGGGTTGAATTT

Fln Alignment:

Contig8334___MSFNFGSGNEHAVNGFLHLQSGLFSRRFHANGHGHRSGSGFYGSVLYDNPSSSEEVGLCDDDEISGGLHSKKRRLSVQQVRSLETSFETESKLEPERKMQLAAELGLQPRQVAVWFQNRRARWKTKQLERDYDDLKQQYEEVVAEKKKLEGQVARLTQEVVAAKGEKKDQKTLISSKSEEENGLQKXXXXXXEEMQSTSPSFCSDADSNRKLLLSSPSRNIQAAVCKTDEENEERNLQALYSNDFHDQLDMYRYLMAA-EQNHHGPDWLNFENL
A9NYL7______________MSFNFGSGNDHAVNGFLHLQSGLFSRRFHANGYGHRSGSGFYGSVLYDNPSSSDEVGLCDDEEISGGLHSKKRRLSVQQVRSLETSFETESKLEPERKMQLAAELGLQPRQVAVWFQNRRARWKTKQLERDYDDLKQQYEEVVAEKKKLEGQVARLTQEVVAAKGEKKDQNTLITAKSEEENGLQKTTTTTTEEMQSTSPSFCSDADSNRKLLLSSPSCNIQAAACKTDEENEEENLQALYSNDFHDQLDMYRYLMAAEEQQHHGPDWLNFENL

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1438		5	94		0.998744
1445	10		10	80	0.99967
1456		12		87	0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
945	956	GAC GAC GAC GAC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain