SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8254

Length: 1457 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8254

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	rhomboid-like protein 14 [Arabidopsis thaliana] sp\|Q8RXW0.1\|Y3761_ARATH RecName: Full=Uncharacterized protein At3g17611 gb\|AAL85014.1\| unknown protein [Arabidopsis thaliana] gb\|AAM51269.1\| unknown protein [Arabidopsis thaliana] gb\|AEE75979.1\| rhomboid-lik	-	-	0.0	54%
FL-Next	sp=Uncharacterized protein At3g17611; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	54%

Source	Gene names
Sma3	At3g17611; CHLREDRAFT_190549; GSVIVT00019747001; MKP6.17; OSJNBa0004B13.13; Os01g0283500; OsI_01431; OsJ_01336; P0498A12.2-1; P0581F09.23-1; PHYPADRAFT_205013; PHYPADRAFT_212773; POPTRDRAFT_657794; RCOM_1004220; VITISV_038478;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RanBP2-type	IPR001876	-	-
Sma3	Peptidase S54, rhomboid	IPR002610	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G17611.1	ATRBL14, RBL14 RHOMBOID-like protein 14 chr3:6024946-6026173 FORWARD LENGTH=334	54%
RefSeq	Arabidopsis thaliana	NP_850606.1	rhomboid-like protein 14 [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002314342.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q8RXW0

Fln msg:

Fln protein: MYRSRERSRNRGMLYILALKVASEFYQLDRKPPVTAGLIAANTLVYLRPGVLDDLLPSLDEVCLHPYLVLKNKDLKRLFLSAFYHLDESHLVYNMLSLLWKGVQLERMMGSTEFASMVAVLLGLSHGIVVVTAKVLATFFDYPYPLTSECAVGFSAVLFALKVVLNSNSPNLTNAYGVVVPARYAAWAELLLIQMYVPGVSFLGHLSGIFAGILYLRFRRFFSGSNPLPPIIRKLTWIIGWPLRFFQGQFIGYRRPTFGHGTVGGRVPGAAGNVNAVWRCTRCTFDNNIYLDTCEMCGTRHGDVDFSASAPRFNPTARAGTSGDLSLEELRRLRLERFNT*

Protein Length: 342

Fln nts: ATGGGGGCCATTAACATGTGAAGACGATCAATACATGAGGGACTCGGGAGGATGCTCTCAGAATGCGAGGAAACGCAGACTGTCCTAGATCACGGGTAGTTAAGAAGTCTCTCAGAATGCGAGGAAACGCAGAATGTTCTAGATCACGAGTAGTTAAGAAGAATTTGTACCTTGTTCAGCTGATTACTTAACAGCGAAGATATTCTCAAACTTCGTCCTATAAAGATGGATGTATAGAGTTTCAGAATGTTATATGTCTGCATCTGTTAAGGATCGTATGAGAAGAAGTGTAATTGATTGAAGGAGCCCAGAAAGAAAAGGAAAGAGGCAGG_-_ATGTATAGAAGCCGAGAGAGATCCCGTAACAGAGGGATGTTATATATTCTAGCTTTGAAGGTGGCCTCTGAGTTTTATCAATTGGATAGGAAACCCCCGGTCACAGCGGGCTTAATTGCAGCCAACACTCTAGTCTATCTGAGGCCCGGCGTGCTGGACGATCTGCTTCCTTCTTTAGATGAAGTGTGTCTCCATCCATATCTGGTTCTGAAGAATAAGGATTTGAAGCGGCTATTTTTATCAGCTTTCTACCATCTGGACGAGTCACACCTTGTATATAACATGCTTTCCTTGTTGTGGAAGGGGGTACAATTAGAAAGGATGATGGGAAGCACTGAATTTGCCTCTATGGTTGCTGTGTTGCTTGGTTTGTCACATGGGATTGTGGTAGTCACAGCAAAGGTGCTGGCAACTTTCTTTGATTATCCGTACCCCTTAACCTCAGAATGTGCAGTCGGATTTTCAGCGGTGCTCTTTGCTTTGAAAGTGGTTCTCAATTCTAACTCCCCAAATCTTACTAATGCATATGGAGTGGTTGTTCCTGCACGATATGCTGCGTGGGCAGAGTTACTACTGATCCAAATGTATGTTCCTGGAGTTTCATTCCTTGGCCACCTTAGTGGCATTTTTGCAGGGATCCTCTACCTCCGTTTCAGGAGATTTTTCTCTGGTAGCAATCCTTTGCCCCCAATTATCAGGAAATTAACATGGATTATAGGCTGGCCTCTGAGATTCTTTCAAGGCCAGTTCATTGGCTACAGAAGACCTACTTTTGGTCATGGAACAGTAGGTGGAAGAGTTCCTGGGGCAGCTGGAAATGTGAACGCAGTATGGCGCTGCACAAGATGTACTTTCGACAACAACATATATCTGGACACCTGTGAGATGTGTGGTACAAGGCACGGAGATGTCGATTTTAGCGCTTCAGCTCCACGCTTTAACCCGACAGCACGTGCTGGTACCTCTGGCGACTTGTCCTTGGAGGAACTACGACGTCTTCGGCTTGAACGTTTTAATACATGA___AAACATGTGGTTGTTTAAAATTGTAAATTTTTATGTCATAGTGGGGAGGCAAATTTGCACCCAGTAACTGTTTTACCCTTTAATCTTTTAAAATTTTAGACA

Fln Alignment:

Contig8254___LYILALKVASEFYQLDRKPPVTAGLIAANTLVYLRPGVLDDLLPSLDEVCLHPYLVLKNKDLKRLFLSAFYHLDESHLVYNMLSLLWKGVQLERMMGSTEFASMVAVLLGLSHGIVVVTAKVLATFFDYPYPLTSECAVGFSAVLFALKVVLNSNSPNLTNAYGVVVPARYAAWAELLLIQMYVPGVSFLGHLSGIFAGILYLRFRRFFSGSNPLPPIIRKLTWIIGWPLRFFQGQFIGYRRPTFGHGTVGGRVPGAAGNVNAVWRCTRCTFDNNIYLDTCEMCGT
Q8RXW0______________LPLLALSAVAEYYRLPWKPPVTASLLAANTLVYLRPAFIDPVIPHISEVWFNPHLIFKHKDLKRLFLSAFYHVNEPHLVYNMMSLLWKGIKLETSMGSSEFASMVFTLIGMSQGVTLLLAKSLLLLFDYDRAYYNEYAVGFSGVLFAMKVVLNSQAEDYSSVYGILVPTKYAAWAELILVQMFVPNASFLGHLGGILAGIIYLKLKGSYSGSDPVTMAVRGVSRLVTWPLRFLNGMVRSRRRRITGRGRVGRGQTGIAG--PGIWRCQSCTYDNSGWLSACEMCGS

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
147		83		16	0.994512
149	66		33		1.0
165			16	83	0.994512
171		87		12	0.992554
192		71	14	14	0.984337
223	87			12	0.992554
224	87		12		0.992554
226	85		14		0.993533
231		12		87	0.992554
233		12		87	0.992554
310	50		50		1.0
348	42		57		1.0
350		42	57		1.0
362		83		16	0.994512
363	85		14		0.993533
364	14		85		0.993533
372		42		57	1.0
392			57	42	1.0
482		50	50		1.0
518		40	60		1.0
525	40	60			1.0
546	80		20		0.995493
565	25			75	0.996473
578			25	75	0.996473
608	50		50		1.0
612	80		20		0.995493
613	80		20		0.995493
614		80	20		0.995493
719			66	33	0.997452
740	33		66		0.997452
758		66		33	0.997452
761	66		33		0.997452
800		20	80		0.995493
947		83		16	0.994512
977		50	50		1.0
1157		9	90		0.999872
1190		90		9	0.999872
1193	9	90			0.999872
1270	18		81		0.999994
1303	18		81		0.999994
1305	27		54	18	1.0
1306	81			18	0.999994
1325	88	11			0.923564
1335		88		11	0.923564
1350	88		11		0.923564
1427		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain