SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8215

Length: 1475 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8215

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	myb family transcription factor-related protein [Populus tomentosa]	-	-	0.0	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	MYB-CC type transfactor	-	-	2.794e-15	-

Source	Gene names
Sma3	At1g69580; At2g01060; At2g01060/F23H14.3; At3g04030; At3g12730; At3g24120; At5g18240; At5g45580; B0403H10-OSIGBa0105A11.2; CHLREDRAFT_196473; GSVIVT00023376001; GSVIVT00025493001; GSVIVT00031697001; GSVIVT00034879001; GSVIVT00037529001; GSVIVT00038751001;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Peptidase M22, glycoprotease, conserved site	IPR017860	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G24120.2	-	48%
RefSeq	Arabidopsis thaliana	NP_566744.1	myb family transcription factor [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002323774.1	predicted protein, partial [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPV3

Fln msg: Overlapping hits, possible frame ERROR between 531 and 512, Unexpected STOP codon in 5 prime region,

Fln protein: MYQQQQANKKNNMSMQVSSGDAALVLTTDPKPRLRWTVELHDRFVDAVNQLGGPDKATPKTIMKVMGVKGLTLYHLKGHLxxxxxxxxQPHKELNDHKDGERGSRLSEGHGASTSSSRMMGQEMNEGFHISEALRMQMEVQRRLHEHLEVQRHLQIRIEAQGKYMQSILENACQTLACQTGPSAGTETRRQELPDLASKVSNDFFRTPPRGTVNYPSLTEMNTFRGEHNHIRQQTHLTDCSVDSCLTSNETFGKMIEENVQGVSKKRPMSFYCDNDTSIWEKDGKGDDVRVHELSNELSNACLGQKETFKGEQRPSSSSVKIESERNSASDVFETRGSQLQEPASSSKTDKDLRNSPKLERPAPKKTPIVADRMSPQTKDGAFSPTTNFLMGEQVNL*

Protein Length: 399

Fln nts: CTGGATCATCCAGTCGGCTTCTTTAACCCTTTGGGTGGACCCTGGTGTTATTACTTTTTCGCTGAAAAGAATAATTCGAAGCCAAGATCGAATAGATGAAATTGCAGTCGGCGTGTGGCGGGGAATCAATCAAAGCAAAGCGAACGCATTTCGGGGAATGGTTTTACTGCACGGGATTCGATCGCGGGACAAGACATAGAAGAAACAGGCGGTCTCCGGGCGCTGGAAATGGAAAAGATTTGAGCGATTCGGAGGTAAGGGGATTCGAAC_-_ATGTACCAACAGCAGCAAGCGAACAAGAAAAACAACATGAGCATGCAGGTTTCTTCCGGAGATGCTGCCCTGGTTCTAACCACTGACCCCAAGCCCAGGCTCCGATGGACTGTCGAGCTGCATGACCGCTTTGTCGATGCTGTCAATCAGCTTGGTGGCCCCGACAAGGCGACGCCGAAGACGATTATGAAAGTAATGGGTGTCAAGGGGCTTACTCTCTACCACCTCAAGGGTCATCTTxxxxxxxxxxxxxxxxxxxxxxxxCAACCTCACAAGGAGTTGAACGACCACAAGGATGGGGAAAGAGGGTCTCGGCTTAGTGAGGGGCATGGGGCAAGCACTTCATCCTCGAGAATGATGGGCCAGGAAATGAATGAGGGTTTCCACATATCTGAGGCGCTAAGAATGCAAATGGAAGTTCAGAGAAGACTGCATGAGCATCTCGAGGTTCAGAGGCATCTGCAGATCCGAATAGAAGCACAAGGTAAATACATGCAATCTATACTAGAAAATGCCTGCCAGACCCTTGCATGCCAAACTGGACCCTCTGCAGGCACGGAAACCAGACGGCAAGAGCTTCCAGACTTGGCATCTAAGGTGTCAAATGATTTCTTTAGGACTCCCCCTCGGGGTACTGTCAATTACCCTTCTTTGACAGAAATGAATACTTTTCGTGGGGAGCACAATCATATTAGGCAGCAGACTCATTTAACAGACTGCTCTGTGGATAGCTGCTTGACATCAAATGAGACTTTTGGGAAGATGATTGAAGAGAATGTGCAAGGTGTGAGTAAGAAAAGGCCAATGTCCTTCTATTGTGATAATGATACATCAATATGGGAAAAAGATGGCAAAGGGGACGATGTGCGAGTGCATGAACTTAGCAACGAACTTAGTAACGCTTGCTTGGGACAGAAAGAAACTTTCAAGGGGGAGCAGAGGCCATCTTCTTCTTCGGTAAAAATTGAGTCTGAGAGGAACTCTGCTAGTGATGTATTTGAAACAAGAGGTAGTCAATTACAAGAACCTGCAAGCAGCAGCAAAACAGATAAAGATCTTCGGAATTCCCCTAAACTTGAAAGGCCTGCTCCTAAGAAAACCCCAATTGTTGCAGATAGAATGTCCCCACAGACAAAAGATGGTGCCTTCTCTCCAACTACAAATTTCTTAATGGGGGAACAAGTAAATCTGTGA___TGTTTTACTCCAG

Fln Alignment:

Contig8215___GDAALVLTTDPKPRLRWTVELHDRFVDAVNQLGGPDKATPKTIMKVMGVKGLTLYHLKGHLxxxxxxxQPHKELNDHKDGERGSRLSEGHGAST-SSSRMMGQEMNEGFHISEALRMQMEVQRRLHEHLEVQRHLQIRIEAQGKYMQSILENACQTLACQTGPSAGTETRRQELPDLASKVSNDFFRTPPRGTVNYPSLTEMNTFRGEHNHIRQQTHLTDCSVDSCLTSNETFGKMIEENVQGVSKKRPMSFYCDNDTSIWEKDGKGDDVRVHELSNELSNACLGQKETF-KGEQRPSSSSVKIESERNSASDVFETRGSQLQEPASSSKTDKDLRNSPKLERPAPKK-TPIVADRMSPQTKDGAF
C0PPV3______________GDACLVLTTDPKPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRAMGVKGLTLYHLKSHLxxxxxxxQPFKEFSDQSNKD-ASCLTEGQGASTCSSSKMINQDVNESFQITEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKACQALTDQTIASAGLEAARQELSELAMKVSNGCLSSPFE-DVNLPSLPEIPQIHVDESTLHQQTQLTDCSVDSCLTSNESTPKIPQEDMQAVRNKRSRPLYCDNDALVWDNDVR-NDLRL----QELSAACLSQVGNLNEEEQMPSVSPIESHSERNSMKDEFDTRMTKTKD-GIGNPAERELQSSPKLERPAARRATHLVHDRISSQVKGGPF

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
267	33			66	0.997452
268		66		33	0.997452
270	66		33		0.997452
271	66		33		0.997452
272		66	33		0.997452
504	33		66		0.997452
551		25		25	0.995533
675	66		33		0.997452
863	40		60		1.0
1128			77	11	0.968132
1282			85	14	0.993533
1385	66		33		0.997452
1411	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain