SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8214

Length: 1234 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene8214 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitogen-activated protein kinase kinase n=1 Tax=Nicotiana benthamiana RepID=Q1ERH6_NICBE	-	-	0.0	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Mitogen-activated protein kinase kinase	-	-	5.515e-21	-

Source	ECs	Term	Type	e value	Identity
Sma3	Mitogen-activated protein kinase kinase.	EC:2.7.12.2	-	1.006e-20	-

Source	Gene names
Sma3	ANQ1; At1g18350; At1g32320; At1g51660; At1g73500; At1g73500/T9L24_8; At3g06230; At3g21220; At5g56580; B1053A04.6; F19C24.26; F27G20_9; F28L1.17; F5D14.7; GSVIVT00016645001; GSVIVT00017883001; GSVIVT00020675001; GSVIVT00025258001; LOC_Os01g32660; LOC_Os03g

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	MAP kinase kinase activity	GO:0004708	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	plant-type hypersensitive response	GO:0009626	Biological Process	-
Sma3	defense response, incompatible interaction	GO:0009814	Biological Process	-
Sma3	floral organ abscission	GO:0010227	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Pre-mRNA processing factor 4 (PRP4)-like	IPR014906	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Nuclear transport factor 2, Eukaryote	IPR018222	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G73500.1	ATMKK9, MKK9 MAP kinase kinase 9 chr1:27639419-27640351 REVERSE LENGTH=310	64%
RefSeq	Arabidopsis thaliana	NP_177492.1	MAP kinase kinase 9 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002329737.1	predicted protein, partial [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYQ4

Fln msg: Overlapping hits, possible frame ERROR between 688 and 687,

Fln protein: MSGRRNPRLNIPIPARQQTQLYRLPLPPQSTSVSRDVSDLEDLERIQILGHGSEGNVYKVRHRRTSELYALKVIHGNHDETVRQQIIREMEILKKTESPYVVKCHGIFEKGEEIHFVLEYMDGGSLEQRRSDTMSERFLAEVARQVLEGLKYLHRHKIVHRDIKPSNLLINRRQEVxxIADFGVSRILSQTLDPCNTYVGTCAYMSPERFDPETYGGRYDGYAGDIWSLGLSLLECYTGHFPFLAAGQKADWPALMCAICYGDPPAPPPTASAHFRSFITCCLHKDARNRWTAAQLLGHPFVLSNPPQTPSIPMQRLSI*

Protein Length: 321

Fln nts: GCGCTGCTCCTCCAGCAACGGAAATTTCTTCCCTATTTGAGCCCCTTTCGAGCCACTGGTTTTCCAAGGACCATACCGCGCCTTCTGTTGCTTCGCTTCCTGCGTTTTTCCATTTCAGACTGTAATCAAGTTTGTATCCATTGAACAACAACAAAAA_-_ATGTCGGGTCGCAGAAATCCGCGGTTGAATATCCCAATTCCTGCTCGGCAACAGACTCAGCTGTATCGACTTCCTCTGCCTCCGCAGAGCACATCTGTGTCCAGAGACGTTTCGGATCTTGAAGACTTGGAGCGAATTCAGATTCTCGGCCATGGAAGCGAGGGCAATGTGTACAAGGTCCGACACAGGAGGACTTCGGAACTTTATGCCCTGAAGGTTATCCATGGCAATCACGACGAGACTGTAAGGCAGCAGATAATCCGAGAAATGGAGATTCTGAAGAAAACAGAGTCCCCGTATGTGGTGAAATGTCACGGGATTTTCGAAAAGGGGGAAGAGATCCACTTCGTGTTGGAGTACATGGACGGAGGGTCGCTGGAACAGAGGAGATCCGACACGATGTCGGAGAGATTTCTGGCAGAGGTAGCAAGGCAGGTCTTGGAGGGTTTGAAATATCTGCACCGTCACAAGATCGTGCACAGAGACATAAAGCCCTCAAATCTGCTCATAAACAGGAGACAAGAAGTGxxxxxxATTGCAGACTTTGGGGTTAGCAGAATTCTGTCTCAGACATTGGATCCCTGTAATACTTATGTGGGTACCTGTGCCTACATGAGCCCCGAGAGATTCGACCCCGAGACCTACGGCGGACGGTACGATGGATACGCGGGCGATATATGGAGCTTGGGGTTGAGTCTGCTGGAGTGCTATACTGGGCATTTTCCGTTTCTGGCAGCAGGGCAGAAGGCGGACTGGCCGGCCTTGATGTGCGCAATCTGTTATGGGGATCCCCCGGCTCCTCCTCCCACGGCGTCTGCCCATTTCCGGAGCTTCATCACATGCTGCCTGCACAAAGATGCCCGCAACAGATGGACAGCTGCTCAGCTCTTGGGGCACCCTTTTGTGCTGTCAAATCCCCCCCAGACACCCTCCATTCCTATGCAGAGGCTCTCCATCTGA___TCCAATGTTCCCCATGCGCAAATTACTCTCTACACATGAGATGAAATAAAACTGCATGTGTATGAATCTATGATCTGTCTAATAACTTGGGTAAATTTTGTTCAAATACCTGGTACATT

Fln Alignment:

Contig8214___MSGRRNPRLNIPIPARQQTQLYRLPLPPQSTSVSRDVSDLEDLERIQILGHGSEGNVYKVRHRRTSELYALKVIHGNHDETVRQQIIREMEILKKTESPYVVKCHGIFEKGEEIHFVLEYMDGGSLEQRRSDTMSERFLAEVARQVLEGLKYLHRHKIVHRDIKPSNLLINRRQEVxIADFGVSRILSQTLDPCNTYVGTCAYMSPERFDPETYGGRYDGYAGDIWSLGLSLLECYTGHFPFLAAGQKADWPALMCAICYGDPPAPPPTASAHFRSFITCCLHKDARNRWTAAQLLGHPFVLSNPPQTPSIPMQRLSI
A9NYQ4______________MSGRRNPRLNIPIPARQQTQLYRLPLPPQNTAVSKDVSDLSDLERIQILGHGSGGNVYKVRHRKTSALYALKVIHGNHDEAVRRQIIREMEILKKTESPYIVKCHGIFEKGEEIHFALEFMDGGSLEQRRSDMMSERFLAQVARQVLEGLKYLHRHKIVHRDIKPSNLLINKKQEVxIADFGVSRILSQTLDPCNTYVGTCAYMSPERFDPETYGGRYDGYAGDIWSLGLSLLECYIGHFPFLAAGQKADWPALMCAICYGDPPSPPPTASAHFRSFITCCLHKDARNRWTAAQLLAHPFLLSNSPQAPTIPMQRLTI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
784	20		70	10	0.999998
870	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain