SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8196

Length: 1613 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene8196 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cellulase (glycosyl hydrolase family 5) protein [Arabidopsis thaliana] gb\|AAU05478.1\| At1g13130 [Arabidopsis thaliana] gb\|AEE28973.1\| Cellulase (glycosyl hydrolase family 5) protein [Arabidopsis thaliana]	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Chromosome chr2 scaffold_132, whole genome shotgun sequence	-	-	6.452e-12	-

Source	Gene names
Sma3	At1g13130; At3g26140; At5g16700; At5g17500; F3F19.15; F5E19_40; GSVIVT00002518001; GSVIVT00002519001; GSVIVT00002521001; GSVIVT00002522001; GSVIVT00002523001; GSVIVT00027656001; GSVIVT00027658001; GSVIVT00027661001; GSVIVT00030726001; H0510A06.1; H0510A06

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ricin B lectin domain	IPR000772	-	-
Sma3	Glycoside hydrolase, family 5	IPR001547	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G13130.1	Cellulase (glycosyl hydrolase family 5) protein chr1:4474726-4477820 FORWARD LENGTH=552	55%
RefSeq	Arabidopsis thaliana	NP_172772.2	Cellulase (glycosyl hydrolase family 5) protein [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002312657.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPB4

Fln msg: Overlapping hits, possible frame ERROR between 1018 and 1015, STOP codon was not found. Distance to subject end: 5 aas,

Fln protein: MRPYVILLAAFILCEVTVSIPLQVRSRWIVDETTGRRVKFACLNWVGHLQPVLPEGLSTQQVSHIANTITSLGFNCVRLTWAIFMVTDPALSNLTVAQTFASLNLSQAAAGVAKHNPRILGLSHIEAYKHVVEALDKAGVMVILDNHVSKPMWCCADDDGNGFFGDMYFDPNLWVRGLQTMASHFKDFHNVVAMSLRNELRGPRANPKDWYTYMQRGAQAVHNANPNVLVILSGLHFDTDLSFLGSEPVSLPFKEKIVYELHWYAFGDKWDGGFPNQLCGTITASVESNGAFLVEAVNGTSAPLFISEFGIDERGVNNNDNRYINCLLAFAAxxxFDWALWTLQASYYIRDGVQGNIETYSVLNEDWEGIRNPDFIAKLKTIQQPIQDPSFSSDSLYQIIYHPATGLCLESTTNNINLGSCSGIGSRWSYNGEEGPIGLLGTSACIGLQGNSLAPVLTYNCSVPDNTLWSVVSTSNLQIAATSSEDGSGKLLCLDGSAKPVVLTKDCICVTENDCSTGDYPEDQWFKVITTN

Protein Length: 533

Fln nts: CGAAAATTATGCTGCG_-_ATGAGGCCATACGTAATCCTGCTGGCCGCATTTATACTGTGTGAGGTCACGGTCTCGATTCCTCTGCAAGTCCGTTCAAGATGGATCGTGGACGAAACCACCGGCAGGCGAGTGAAGTTTGCCTGCCTGAACTGGGTGGGTCACCTGCAGCCCGTGCTGCCGGAGGGGCTGAGCACCCAGCAAGTGTCACACATCGCCAACACTATCACCTCTCTGGGATTCAATTGCGTGCGCCTTACGTGGGCTATTTTCATGGTCACAGATCCGGCTCTTTCCAATCTCACCGTTGCTCAGACTTTCGCCTCTCTCAACCTGAGCCAGGCAGCAGCCGGAGTGGCCAAGCACAACCCGAGGATCCTTGGGCTCTCTCACATCGAAGCCTACAAGCACGTGGTCGAGGCTCTGGACAAAGCCGGCGTCATGGTCATACTAGACAACCACGTGAGCAAACCGATGTGGTGCTGCGCTGATGATGATGGCAACGGTTTCTTTGGGGACATGTACTTCGATCCGAATCTCTGGGTTCGGGGGCTTCAAACCATGGCCTCCCATTTTAAAGACTTCCACAATGTCGTAGCCATGTCGCTGCGGAACGAGCTCCGAGGGCCGAGGGCTAACCCCAAAGACTGGTACACATACATGCAGCGCGGAGCCCAGGCCGTCCATAACGCCAATCCCAATGTCCTCGTTATTCTCTCCGGCCTGCACTTCGATACCGATTTGAGCTTCCTGGGGTCAGAACCGGTGTCGTTGCCCTTCAAGGAGAAGATAGTCTACGAGCTCCATTGGTATGCCTTCGGAGACAAGTGGGACGGGGGGTTTCCCAACCAGCTCTGCGGCACCATCACAGCATCGGTGGAAAGCAACGGAGCGTTTTTAGTGGAGGCGGTTAATGGGACCTCGGCGCCTCTGTTTATCAGCGAGTTCGGGATTGATGAGAGAGGAGTTAACAATAATGATAACAGATATATTAACTGTCTTCTTGCGTTTGCTGCCxxxxxxxxxTTCGACTGGGCGCTGTGGACTCTACAGGCAAGCTATTATATCCGCGATGGAGTCCAGGGAAATATCGAGACTTACAGTGTGTTGAACGAGGACTGGGAGGGGATCAGGAATCCGGATTTTATTGCCAAGCTTAAGACGATACAGCAACCAATTCAAGATCCTTCCTTCTCATCGGATTCCTTGTATCAAATAATCTACCATCCTGCAACTGGGCTCTGCCTTGAATCTACTACGAACAACATAAACTTGGGTTCTTGCAGTGGTATCGGCAGCAGATGGAGCTACAACGGGGAGGAAGGCCCCATTGGCCTTCTTGGAACTTCTGCCTGCATAGGATTACAAGGCAACAGCCTCGCTCCAGTTTTGACCTACAATTGCTCGGTCCCTGACAACACCCTGTGGAGTGTTGTCTCCACTTCAAACCTGCAAATTGCGGCCACATCCTCTGAGGATGGCAGCGGGAAACTGCTGTGCTTGGATGGGAGCGCCAAGCCAGTAGTTTTGACAAAGGACTGCATCTGTGTCACTGAAAATGATTGTTCCACGGGTGATTATCCAGAGGACCAGTGGTTCAAGGTCATAACCACCAACAG

Fln Alignment:

Contig8196___FILCEV--TVSIPLQVRSRWIVDETTGRRVKFACLNWVGHLQPVLPEGLSTQQVSHIANTITSLGFNCVRLTWAIFMVTDPALSNLTVAQTFASLNLSQAAAGVAKHNPRILGLSHIEAYKHVVEALDKAGVMVILDNHVSKPMWCCADDDGNGFFGDMYFDPNLWVRGLQTMASHFKDFHNVVAMSLRNELRGPRANPKDWYTYMQRGAQAVHNANPNVLVILSGLHFDTDLSFLGSEPVSLPFKEKIVYELHWYAF--GDKWDGGFPNQLCGTITASVESNGAFLVEAVNGTSAPLFISEFGIDERGVNNNDNRYINCLLAFAAGxDFDWALWTLQASYYIRDGVQGNIETYSVLNEDWEGIRNPDFIAKLKTIQQPIQDPSFSSDSLYQIIYHPATGLCL-ESTTNNINLGSCSGIGSRWSYNGEEGPIGLLG-TSACIGLQGNSLAPVLTYNCSVPDNTLWSVVSTSNLQIAATSSEDGSGKLLCLDGSAKPVVLTKDCICVTENDCSTGDYPEDQWFKVITTN
B8LPB4______________FLLCFVGPALSGSLAVKSRWIVDETGGTRVKLACVNWVSHLQPMVTEGLSRQPLKYITSTIVSQGFNCVRLTWATFMVTNPANRNLTVQDSLNSLNLSDAAAAMAVSNPEFLDLTLMDSYKRVVAGLGEAGLMVILDNHISRPQWCCGYNDGNGFFGDADFDPGVWIQGLSAMATAFKGTAAVVGMSLRNELRGSRANAADWYKYMQQGAQAVHDANPDVLVIMSGLNYAADLKFLASKPVSLEFTNKIVYEMHWYSFTDGKAWENMPANKLCGTVTARVNDHTAFVAKTLS-PPAPLFISEFGIDERGSNVGDNRFINCFLAFAAExDFDWALWTLQGSYYLRNGQPGFEETYGIFNGRWDDLRDPPFVSRLKSLQKPFQESFSSSEPLYKTLYHPATGLCLATSGEGGLKLDSCDS-PTLFEYKSPQGAFTLSDESSTCIAAKGPGLAAELSTQCAA-SNSKWQRVSSSNLQVSVTLSVNGTSQMLCLDGKSSPQVLTNDCICLKDSDCRKDENPEMQWFKLITTN

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
966	33			66	0.997452
967	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain