SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8022

Length: 1606 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene8022 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptidyl-prolyl cis-trans isomerase n=4 Tax=Pinaceae RepID=C9EGT5_9CONI	-	-	0.0	91%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine).	-	-	0.0	98%

Source	ECs	Term	Type	e value	Identity
Sma3	Peptidylprolyl isomerase.	EC:5.2.1.8	-	0.0	-

Source	GOs	Term	Type	e value	Identity
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G16600.1	ROC3 rotamase CYP 3 chr2:7200862-7201383 FORWARD LENGTH=173	83%
RefSeq	Arabidopsis thaliana	NP_179251.1	Peptidyl-prolyl cis-trans isomerase CYP19-1 [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002313736.1	predicted protein [Populus trichocarpa]	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q5Y2E8

Fln msg: your sequence is longer than subject: 234 - 172

Fln protein: MEGCSRPPPRSWVRSGHLLADHRIQRGKERLCSGESKVDQFGRKSGFWCSFLQNLRGSELRMPNPKVFFDMQVGSAPAGRIVMELYADVVPKTAENFRALCTGEKGTGRSGKPLHFKGSSFHRVIPGFMCQGGDFTRGNGTGGESIYGEKFADENFVRKHTGPGILSMANAGPNTNGSQFFICTAQTSWLDGKHVVFGQVVEGLEVVREIEKVGSGSGRTSKPVVIADSGQLA*

Protein Length: 235

Fln nts: GGAAAATTTTAACGATTCATTGGATACCATATATGAACAAGCATGCATTGCACCGATAGAGGCCATCCAATATTTTGAGAAGAAACAGCAAATACGACAGTCTAACTAATTTTAAACAAAGTCACTCTGAAATAGCCCACCAACAGAAAACACCACACCATCTAACGTCGCAGCTCTGCCCAATGTTAAAGTAGGACTTCAAGTACATTGGCGGAGTTTCTTGGCTGCCTGGGCCTCCGCCTGGGCTTGGGCTTTCTTGAACAGCTTATGATCGGTGTGCTGTTGGAAGGTCTTCGCCGGGAACA_-_ATGGAGGGTTGTTCTCGTCCACCACCTCGTTCATGGGTCCGATCAGGGCATCTTTTGGCGGATCACAGAATACAGCGGGGGAAAGAGAGGCTTTGTAGCGGAGAAAGTAAGGTTGATCAATTTGGCAGAAAGTCAGGCTTTTGGTGCAGCTTTTTGCAGAATCTCAGAGGTTCCGAACTCAGGATGCCGAACCCAAAGGTTTTCTTTGATATGCAGGTCGGCAGTGCCCCAGCCGGCCGGATCGTGATGGAGCTCTATGCGGATGTGGTGCCGAAGACGGCTGAGAACTTCCGCGCGTTGTGTACCGGCGAGAAAGGCACCGGCCGCTCAGGCAAGCCTCTGCACTTCAAGGGTTCGTCGTTCCACCGCGTGATCCCAGGGTTCATGTGCCAGGGCGGTGACTTCACAAGGGGCAACGGTACCGGTGGAGAGTCGATCTACGGCGAGAAGTTTGCCGATGAGAACTTTGTAAGGAAGCACACGGGGCCTGGCATCCTCTCCATGGCCAACGCCGGCCCTAACACTAACGGCTCGCAGTTCTTCATCTGTACCGCACAGACCTCGTGGCTGGATGGCAAGCATGTCGTATTTGGTCAAGTTGTAGAGGGTTTGGAGGTCGTGCGCGAGATCGAGAAGGTTGGATCTGGATCTGGCAGAACTTCAAAGCCGGTTGTCATTGCCGACTCTGGACAGCTCGCTTGA___ATTTTTATTATTTACCTTGGCCTTTACGCTGCACATACGTTAATAGGTTACTATTTCCTTCAACCATTACGCTGCATAGGTTCATAGCGTATTGTTCCCTTACCATTACGCTGCATAATTCGCTAGGGTTTGTCAGCATATATGTTTCAAGGGTTTTTTGCATCTTTCTACTCTAGATAATCGCTGCATAAGTTCCTAGGGTTTGTCAGCAAAGAGGCTTCAAATGTTTTTGTGTCTTTTCTAGTTATTATAAACGCTGCATGGGTTCCTAGGGTTTGTGAGCATAGAGATTTCAAGGGTTTTTTTACATCTTTGGAGTTGAGATAAACGCTATGCCAATAAACCCAGTAATGTTTGTTTCTGTCATATGAAATTTTTACATCTGGAGTTGCATTCGTAGTACTCTCCTGGTCATCGAGAAATTTTAATGTTTTTTTTTAATGCGTTTAAAATATGCTTCAATGGGTCCGGAAAACAATTATTTATATATATTATATAATTTGTCGGGCGTAGATCGTTAGTCAAGCTTTTTATGACCAAGTTACTAAGTAAATTGGTATGGTAAATAAAATATGTGAGCGAGTTAATAGTTCCAAATC

Fln Alignment:

Contig8022___MPNPKVFFDMQVGSAPAGRIVMELYADVVPKTAENFRALCTGEKGTGRSGKPLHFKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGEKFADENFVRKHTGPGILSMANAGPNTNGSQFFICTAQTSWLDGKHVVFGQVVEGLEVVREIEKVGSGSGRTSKPVVIADSGQLA
Q5Y2E8______________MPNPKVFFDMQVGGAPAGRIVMELYADVVPKTAENFRALCTGEKGTGRSGKPLHFKGSSFHRVIPGFMCQGGDFTRGNGTGGESIYGEKFADENFVKKHTGPGILSMANAGPNTNGSQFFICTAQTSWLDGKHVVFGQVVEGLEVVREIEKVGSGSGRTSKPVVIADSGQLA

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
32	33			66	0.997452
35			33	66	0.997452
465		16		83	0.994512
946	1		98		0.999998
984	98	0	1		0.914257
987		1		98	0.996756
989	0			98	0.999682
1099	94	5		0	1.0
1102	96			0	0.99998
1124	41	0	57		1.0
1198	3	0		94	1.0
1201	1	94		1	0.999936
1203	0	2	85	10	1.0
1204	0	92			1.0
1205	1			91	1.0
1206	97	2			0.9738
1207		92	5	2	1.0
1212	1	91		6	1.0
1213	8	90	0		1.0
1214	9	0		89	1.0
1215		90	8	0	1.0
1216		2	8	88	1.0
1217	12	85	1		1.0
1218		9		90	1.0
1219	3	4		91	0.999819
1220	3	7	1	86	1.0
1222	17	55	27		1.0
1223		59		40	1.0
1224		58	33		1.0
1225		50	44		1.0
1270	14		85		0.993533
1368		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain