SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8016

Length: 2092 nt

UniGene Fasta

>sp_v3.0_unigene8016
CAATAAAGAAGGTGGGCGGTGGACCATTCGGATTCTTTAACCTTGATTACTAACTCTCCAACGTGTTGGGTGCTGAGAGCACAATTTTTAGAGCGCACCTGTGACCCAATATTTTATTCCTGCATTGGAATCCTAGTGGACCAAGAACCCATATTCTTTCTAATTCCCATTTTATCTGGTGAATGGCCTGAGATTCATTGTCCTGCAAGTGATTTTCGTAATGGGCATCAGAAGAATTGCTTGCTTGGTCATTTTGGTCTGCTTTAAGGCCATATTGGAGACCATAGCTCTGTCTCAGGCCGTTCTTCCCCCCTTGCCAGTTTTGCCTCTTCCCAATGCCAGGCAGCTCAAATGGCAGCAGCGAGAGATGATAATGTTCTTTCATTTCGGCATGAACACATTTACTGACAGAGAATGGGGGGATGGACAAGAGGATCCGTGGCTTTTCAATCCAAAAGCCCTCAATGCTGCTCAGTGGGCCTCAGTAGCCAAGGAGGCCGGATTCTCTCTTATGATCCTGACTGCCAAGCACCATGATGGCTTCTGCCTCTGGCAAACGGCCTACACCAATCATTCTGTGAGAAGCAGCCCATGGGAGGACGGTAAGGGGGACGTTGTCAAGGATTTGGCAGAGGCAGCCCAAGTGGCAGGGCTGGATTTTGGGGTGTATCTATCTCCATGGGACCGCCATGAACCTACCTATGGCCTTGAGTTGCAGTACAATGAGTTCTATATGGGACAGTTGCAGGAACTTCTCACCAAATATGGACCAATATCTGAGGTTTGGTTCGATGGTGCCAAAGGAAAGAATGCAACCAACATGACCTACTTGTTTACCAATTGGTTTGAAATGGTGCATGAGTTGCAGATCTCTGCAAATATATTCTCAGACGCCGGGCCAGACGTGAGGTGGGTCGGAGACGAAAATGGTACTGCTGGATTAACCTCCTGGTCGACCATCAATGGATCTGCGTTGAAGATCGGAGATGCTGACATTATGGGGTATCTAAACACGGGAGACCCATACGGAACCGATTGGATTCCTGCAGAATGTGACGTATCAATCAGAGAAGGGTGGTTTTGGCACAAATCCCAGCGGCCCAAACCGCTAAGCAAGCTGCTGGAAATCTACTACAACTCGGTGGGAAGAAACTGCCTGCTGCTGCTAAATGTTCCACCCAACACAGCCGGCCTCATCTCGACAGAGGACTCCACCAGGTTGCTGCAGATGAAGGCGGCAATAAACACCATATTCTCAAGGAACCTCGCAGCCTCCGCCACAGTCACGGCCAGCAGCGTGCGGGGGGGCTACAACGGCGGCCCCTTCGCCCCTGTGAACGTTCTGAACGACGACGTGTGGTCATATTGGGCTCCGGAGGAGAATAAAGGGGGCGCTCATTGGGTGGATCTGACGACCAATGAAGCCATGGAATTTAACGTTGTGAGGATTCAGGAGCCCATAGGAATGGGGCAGAGGGTGATGCGGTACAGTGTATATGCTCAAATTGCAGGTGTGGATACACCAGTGCGGGTGTTTCGAGGAAGCACCGTTGGATACAAAAGGCTCCATAGACTGAAGGCCCACATTAAGGCTACCTCTGTAAGACTTCTTTTGGAGAAATACAGAGGGGAGATCCCTCTCATCTCATCGTTTGGCCTGCACCTTGATAAGTTTTACCCCAAAAAGAGGGCCCTCTAATTTCTGAGCATCAAATTGGGCTTCACTATTTATGACGTTGTAGTGTTGTACCATACATTGAACTTGATTAGTTTCCATTCTTGAATCTGGTTACACCCATAAAATCCTTTCCGTATCCCGTGAAAGCGATATGTAGTTTCGTCTCCATGCACTGTGATGGAAGTAGCGGTAATTCCATGGCGCGGGAACGACAAGTGAGAAAAGACATCTCACAAGAATGATTTTTTTCCCTTTAATTACTGACGCATGTGAAAGCAGTTTTCACAAAGGAAAAATCGTTGGTGAAGTAATAAATAAAGGCAAACATAATTAAATATTGTGGACTTTGTTGAACGACATAATTAAATATGACATTTAACCTTGTCAATTTTGGTTTGTGTCAAGATCGTTGAA

Ace file of the UniGene sp_v3.0_unigene8016

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alpha-l-fucosidase, putative n=1 Tax=Ricinus communis RepID=B9R9L2_RICCO	-	-	0.0	60%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	62%
Sma3	Alpha-L-fucosidase 1	-	-	3.829e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Alpha-L-fucosidase.	EC:3.2.1.51	-	4.114e-16	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Other glycan degradation	00511		4.114e-16	%

Source	Gene names
Sma3	At2g28100; B0103C08-B0602B01.14; F24D13.11; FUC1; GSVIVT00022175001; GSVIVT00038518001; GSVIVT00038520001; LOC_Os04g47280; OSJNBa0084K11.7; Os04g0560400; Os09g0520800; OsI_16968; OsI_32076; OsJ_30048; P0669G04.14; PHYPADRAFT_209606; POPTRDRAFT_204508; POP

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	alpha-L-fucosidase activity	GO:0004560	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	glycoprotein catabolic process	GO:0006516	Biological Process	-
Sma3	cell adhesion	GO:0007155	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Coagulation factor 5/8 C-terminal type domain	IPR000421	-	-
Sma3	Glycoside hydrolase, family 29	IPR000933	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 29, conserved site	IPR018526	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G28100.1	ATFUC1, FUC1 alpha-L-fucosidase 1 chr2:11974803-11976489 FORWARD LENGTH=506	54%
RefSeq	Arabidopsis thaliana	NP_180377.2	alpha-L-fucosidase 1 [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002318264.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: I1LDX9

Fln msg:

Fln protein: MGIRRIACLVILVCFKAILETIALSQAVLPPLPVLPLPNARQLKWQQREMIMFFHFGMNTFTDREWGDGQEDPWLFNPKALNAAQWASVAKEAGFSLMILTAKHHDGFCLWQTAYTNHSVRSSPWEDGKGDVVKDLAEAAQVAGLDFGVYLSPWDRHEPTYGLELQYNEFYMGQLQELLTKYGPISEVWFDGAKGKNATNMTYLFTNWFEMVHELQISANIFSDAGPDVRWVGDENGTAGLTSWSTINGSALKIGDADIMGYLNTGDPYGTDWIPAECDVSIREGWFWHKSQRPKPLSKLLEIYYNSVGRNCLLLLNVPPNTAGLISTEDSTRLLQMKAAINTIFSRNLAASATVTASSVRGGYNGGPFAPVNVLNDDVWSYWAPEENKGGAHWVDLTTNEAMEFNVVRIQEPIGMGQRVMRYSVYAQIAGVDTPVRVFRGSTVGYKRLHRLKAHIKATSVRLLLEKYRGEIPLISSFGLHLDKFYPKKRAL*

Protein Length: 494

Fln nts: CAATAAAGAAGGTGGGCGGTGGACCATTCGGATTCTTTAACCTTGATTACTAACTCTCCAACGTGTTGGGTGCTGAGAGCACAATTTTTAGAGCGCACCTGTGACCCAATATTTTATTCCTGCATTGGAATCCTAGTGGACCAAGAACCCATATTCTTTCTAATTCCCATTTTATCTGGTGAATGGCCTGAGATTCATTGTCCTGCAAGTGATTTTCGTA_-_ATGGGCATCAGAAGAATTGCTTGCTTGGTCATTTTGGTCTGCTTTAAGGCCATATTGGAGACCATAGCTCTGTCTCAGGCCGTTCTTCCCCCCTTGCCAGTTTTGCCTCTTCCCAATGCCAGGCAGCTCAAATGGCAGCAGCGAGAGATGATAATGTTCTTTCATTTCGGCATGAACACATTTACTGACAGAGAATGGGGGGATGGACAAGAGGATCCGTGGCTTTTCAATCCAAAAGCCCTCAATGCTGCTCAGTGGGCCTCAGTAGCCAAGGAGGCCGGATTCTCTCTTATGATCCTGACTGCCAAGCACCATGATGGCTTCTGCCTCTGGCAAACGGCCTACACCAATCATTCTGTGAGAAGCAGCCCATGGGAGGACGGTAAGGGGGACGTTGTCAAGGATTTGGCAGAGGCAGCCCAAGTGGCAGGGCTGGATTTTGGGGTGTATCTATCTCCATGGGACCGCCATGAACCTACCTATGGCCTTGAGTTGCAGTACAATGAGTTCTATATGGGACAGTTGCAGGAACTTCTCACCAAATATGGACCAATATCTGAGGTTTGGTTCGATGGTGCCAAAGGAAAGAATGCAACCAACATGACCTACTTGTTTACCAATTGGTTTGAAATGGTGCATGAGTTGCAGATCTCTGCAAATATATTCTCAGACGCCGGGCCAGACGTGAGGTGGGTCGGAGACGAAAATGGTACTGCTGGATTAACCTCCTGGTCGACCATCAATGGATCTGCGTTGAAGATCGGAGATGCTGACATTATGGGGTATCTAAACACGGGAGACCCATACGGAACCGATTGGATTCCTGCAGAATGTGACGTATCAATCAGAGAAGGGTGGTTTTGGCACAAATCCCAGCGGCCCAAACCGCTAAGCAAGCTGCTGGAAATCTACTACAACTCGGTGGGAAGAAACTGCCTGCTGCTGCTAAATGTTCCACCCAACACAGCCGGCCTCATCTCGACAGAGGACTCCACCAGGTTGCTGCAGATGAAGGCGGCAATAAACACCATATTCTCAAGGAACCTCGCAGCCTCCGCCACAGTCACGGCCAGCAGCGTGCGGGGGGGCTACAACGGCGGCCCCTTCGCCCCTGTGAACGTTCTGAACGACGACGTGTGGTCATATTGGGCTCCGGAGGAGAATAAAGGGGGCGCTCATTGGGTGGATCTGACGACCAATGAAGCCATGGAATTTAACGTTGTGAGGATTCAGGAGCCCATAGGAATGGGGCAGAGGGTGATGCGGTACAGTGTATATGCTCAAATTGCAGGTGTGGATACACCAGTGCGGGTGTTTCGAGGAAGCACCGTTGGATACAAAAGGCTCCATAGACTGAAGGCCCACATTAAGGCTACCTCTGTAAGACTTCTTTTGGAGAAATACAGAGGGGAGATCCCTCTCATCTCATCGTTTGGCCTGCACCTTGATAAGTTTTACCCCAAAAAGAGGGCCCTCTAA___TTTCTGAGCATCAAATTGGGCTTCACTATTTATGACGTTGTAGTGTTGTACCATACATTGAACTTGATTAGTTTCCATTCTTGAATCTGGTTACACCCATAAAATCCTTTCCGTATCCCGTGAAAGCGATATGTAGTTTCGTCTCCATGCACTGTGATGGAAGTAGCGGTAATTCCATGGCGCGGGAACGACAAGTGAGAAAAGACATCTCACAAGAATGATTTTTTTCCCTTTAATTACTGACGCATGTGAAAGCAGTTTTCACAAAGGAAAAATCGTTGGTGAAGTAATAAATAAAGGCAAACATAATTAAATATTGTGGACTTTGTTGAACGACATAATTAAATATGACATTTAACCTTGTCAATTTTGGTTTGTGTCAAGATCGTTGAA

Fln Alignment:

Contig8016___QLKWQQREMIMFFHFGMNTFTDREWGDGQEDPWLFNPKALNAAQWASVAKEAGFSLMILTAKHHDGFCLWQTAYTNHSVRSSPWEDGKGDVVKDLAEAAQVAGLDFGVYLSPWDRHEPTYGLELQYNEFYMGQLQELLTKYGPISEVWFDGAKGKNATNMTYLFTNWFEMVHELQISANIFSDAGPDVRWVGDENGTAGLTSWSTINGSALKIGDADIMGYLNTGDPYGTDWIPAECDVSIREGWFWHKSQRPKPLSKLLEIYYNSVGRNCLLLLNVPPNTAGLISTEDSTRLLQMKAAINTIFSRNLXXXXXXXXXXXRGGYNGGPFAPVNVLNDD-VWSYWAP-EENKGGAHWVDLTTNEA-MEFNVVRIQEPIGMGQRVMRYSVYAQIAGVDTPVRVFRGSTVGYKRLHRLK-AHIKATSVRLLLEKYRGEIPLISSFGLHLDKFYPKK
I1LDX9______________QLKWQQREIIMFFHFGVNTFSDREWGTGQENPAIFNPTGLNTTQWATVAADAGVSLMILTAKHHDGFCLWPSKYTDHSVISSPWQGGKGDVVQDFVNAATAQGIDVGVYLSPWDRHDPRYGNDLLYNQYYLAQLQELLKKYPNVREIWFDGAKGANAKNMTYYFSDWFSMVKELQSSINIFSDAGPDVRWVGDETGSAGYTCWSTINRTSLSIGSPDIIQYINTGDPKGTDWLPAECDVSIRKGWFWHKSESPKKLSELLDIYYNSVGRNCVLLLNVPPNTSGLITEVDANRLKEFRSAIKTIFHQNLAEDCFVKVSSQRGG-----FGPEKMLDSDHLWSYWAPRDDDDEKDHWVEIWAKEGRLRFNVVRIQEAIGLGQRIKRHEIY-----VDGKL-IIKATTVGYKRLHRLDGGEVHARGVRIRIRKARG-VPLISSIGLHYDPFWHSK

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
1171		30		70	1.0
1183		87		12	0.992554
1187			75	25	1.0
1254			14	85	0.993533
1255		85	14		0.993533
1256			14	85	0.993533
1276		50		50	1.0
1281		83		16	0.994512
1300			50	50	1.0
1302			80	20	0.995493
1322		75		25	0.996473
1328	50		50		1.0
1377	83		16		0.994512
1391		83	16		0.994512
1462	87		12		0.992554
1471	75		25		1.0
1482		87		12	0.992554
1519		12		87	0.992554
1570			14	85	0.993533
1583		87		12	0.992554
1584	87			12	0.992554
1585		87	12		0.992554
1586	87		12		0.992554
1587		12		87	0.992554
1589	87		12		0.992554
1590	87			12	0.992554
1591		12	87		0.992554
1592	12		87		0.992554
1595	87	12			0.992554
1596	12	87			0.992554
1597		87		12	0.992554
1642	16	83			0.994512
1644		16		83	0.994512
1645	16	83			0.994512
1647		83		16	0.994512
1762		20		80	0.995493
1796	66	33			0.997452
1821		10	89		1.0
1824	46			53	1.0
1830	64	35			1.0
1833		50		50	1.0
1842		92		7	1.0
1851		57	42		1.0
1868			47	52	1.0
1934	80		20		0.995493
1935	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain