SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7949

Length: 1657 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene7949 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS6_PINMO	-	-	0.0	45%
FL-Next	tr=Putative TIR-NBS-LRR protein; Pinus monticola (Western white pine) (Strobus monticola).	-	-	0.0	61%

Source	Gene names
Sma3	RGA;

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E9NZS6

Fln msg: Separated hits, possible frame ERROR between 102 and 503, Unexpected STOP codon at 3' end. Distance to subject end: 865 aas, your sequence is shorter than subject: 400 - 1490

Fln protein: QIEAAIGVASVHVAIFSPRYAESKWCLEELALMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTLAKEYFNRHRSEYGASSFLFDVRENSARNSLHSLQINLAKDLIGGVTIEIERWDEGIGQLKKNLKDRRVLVILDDVDHLDHLDAFLPIKVVLHPKSLILVTSRDKGLLIRAGIAESSIYHLRGLNRIHSRQLFCSHAFSQLDPPPTYEKLVDGFLQACDGLPLSLKVIGSRLYGKDDQCLWQEVLDGLS*TLPADIVAKLRISYDSLSEREQQIFSDIACFAVAEDRRA*

Protein Length: 401

Fln nts: CAAATAGAAGCAGCTATTGGAGTCGCCTCTGTCCATGTCGCGATATTCTCTCCACGTTATGCAGAGTCCAAATGGTGCCTCGAAGAACTTGCGCTCATGGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAACCACGCTTGCCAAAGAGTATTTTAATCGTCATAGATCAGAATATGGAGCATCTTCCTTTCTGTTCGATGTGCGGGAAAATTCAGCCAGAAATTCTTTACATTCTCTACAGATTAATCTAGCTAAGGACCTTATAGGTGGTGTAACTATCGAAATTGAGCGGTGGGACGAAGGTATAGGGCAACTTAAAAAGAATCTCAAAGATCGCCGAGTTCTTGTAATATTAGATGATGTAGACCATTTAGATCACCTAGATGCCTTCTTGCCGATTAAGGTTGTCCTTCATCCAAAGAGTTTGATCCTGGTTACAAGTCGTGACAAGGGTTTACTTATAAGAGCGGGAATTGCAGAGTCATCCATCTATCACCTTAGGGGGCTCAATAGAATACACTCCCGACAGCTTTTCTGCTCGCATGCCTTCTCTCAGTTAGATCCACCGCCAACATATGAAAAATTGGTAGATGGATTTTTACAGGCCTGCGATGGATTACCCCTATCGCTGAAAGTGATTGGTTCTCGTCTTTATGGCAAAGATGACCAATGTCTTTGGCAGGAGGTACTGGATGGACTTAGCTAAACACTACCTGCGGACATAGTGGCAAAACTTAGAATTAGTTATGACTCCCTGAGTGAAAGGGAGCAGCAAATATTTTCAGATATTGCTTGTTTTGCCGTAGCAGAAGATAGGAGGGCTTGATGGTCTCGTGGAGCTTCACAGGCTGAGGATAAAACGGGTGTCCTATAGAAGTGGATGAGCTGCTGCTTCCAGCTGAAACATTTATAGATCACGAGCTGGTTACTTTCGGCGACAATTCCGAGGAAAAGCGTGATGCAGAGGGGGAAGAGTGTGTGCTTTCTTTACCGGATATTGTCCTATGTTGGTAAATCCTATGGATTTCCGTTGGTGAATCCTATGGATTTCTGGGATCTTATGGATGACTTGGAATAGAGGCATTGGAGAAGGCTGCAGTGGAGGATTTCTTTGGGCTTGTTTTTCTGGGGTTTAATGATATTGCTATCTTTTCTGGGGTTTAATGATATTGCTATCTCTGCTACTTGCATGCCTTTTTTCCACTTTTAGTGGAGGTGTGTTCTTCGTGATTAACATTTTCGCATTTAGTATATTTTCAGATATATACATCATTTTACATTTTGG

Fln Alignment:

Contig7949___QIEAAIGVASVHVAIFSPRYAESKWCLEELALMVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTLAKEYFNRHRSEYGASSFLFDVRENSARNSLHSLQINLAKDLIGGVTIEIERWDEGIGQLKKNLKXXXXXXXXXXXXXXXXXD--AFLPIK----VVLHPKSLILVTSRDKGLLIRAGIAESSIYHLRGLNRIHSRQLFCSHAFSQLDPPPTYEKLVDGFLQACDGLPLSLKVIGSRLYGKDDQCLWQEVLDGLS*TLPADIVAKLRISYDSLSEREQQIFSDIACFAVAEDR
E9NZS6______________EIKGAIETASVHIAIFSPTYADSPWCLDELVFMLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTLVKELFNRNSSRYSKSCFLIDVREK-AKSSIPSLQRKLLKDLCASDQEPIDSKDEGIEILRKHFSVLSAPVLLVLDDVDHQDQVYALLPVTDKGILTLPPSSLILITSRDMEVLTRSGVQKPSICKLTGLSEERSRELFCSHAFCQPHPLSGFEPLVDQFLEVCSGLPLSLKVFGGLLCRNTDKSYWKKQVKKLRKTLHKDIQKSLQVSYDALEEEEQQIFLDIACFFIGKNR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1488		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain